SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000117016
Gene: RIMS3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:40620680-40665682 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_145900004 chr1:40679497-40731619 Sample_02_1459 Pancreas THP1+PANC1_shCTCF 4 1 1322 151 2 153 872 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_143100843 chr1:40680893-40725022 Sample_02_1431 Blood T cell 843 10 1120 127 2 148 872 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_145800003 chr1:40683425-40737564 Sample_02_1458 Pancreas THP1+PANC1_shNC 3 1 1407 158 2 163 872 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3,KCNQ4
SE_02_134000728 chr1:40684139-40714591 Sample_02_1340 Blood acute myeloid leukemia 728 5 805 95 2 136 694 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_076500102 chr1:40684607-40723414 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 102 14 1013 115 2 146 799 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_01_002000438 chr1:40688214-40721888 Sample_01_0020 Blood B-cell 438 7 867 94 2 144 762 NFYC,LOC100130557,MIR30E,MIR30C1,RIMS3
SE_02_023300574 chr1:40688397-40729757 Sample_02_0233 Tonsil Th1 574 9 1066 125 2 151 872 NFYC,LOC100130557,MIR30E,MIR30C1,RIMS3
SE_04_000200534 chr1:40689972-40713834 Sample_04_0002 Blood cold shocked K562 534 6 615 69 1 132 564 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_017900317 chr1:40690039-40714340 Sample_02_0179 Urinary bladder T24 317 4 629 71 1 136 563 NFYC,LOC100130557,MIR30E,MIR30C1,RIMS3
SE_04_000100811 chr1:40690041-40713811 Sample_04_0001 Blood heat shocked K562 811 3 614 69 1 132 563 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_015000815 chr1:40690122-40712703 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 815 3 586 68 1 126 505 NFYC,LOC100130557,MIR30E,MIR30C1,RIMS3
SE_02_076200829 chr1:40690143-40745867 Sample_02_0762 Podocyte podocyte_CTL 829 10 1409 148 1 177 768 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3,KCNQ4
SE_02_149201345 chr1:40690164-40714941 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1345 3 644 73 1 136 552 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_031700797 chr1:40690169-40736880 Sample_02_0317 Neuroblastoma GICAN 797 7 1192 131 1 163 730 NFYC,LOC100130557,KCNQ4,MIR30E,MIR30C1,RIMS3
SE_02_021300550 chr1:40690225-40723318 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 550 4 847 91 1 146 648 NFYC,LOC100130557,MIR30E,MIR30C1,RIMS3
SE_02_139100239 chr1:40690302-40705463 Sample_02_1391 Peripheral blood FE-PD_ALK- 239 1 423 46 0 52 392 NFYC-AS1,NFYC,MIR30E,RIMS3
SE_01_008401030 chr1:40690313-40714459 Sample_01_0084 Spleen spleen 1030 5 620 71 1 136 550 NFYC,LOC100130557,MIR30E,MIR30C1,RIMS3
SE_02_030100942 chr1:40690432-40728402 Sample_02_0301 Neuroblastoma GIMEN 942 7 965 108 1 151 722 NFYC,LOC100130557,MIR30E,MIR30C1,RIMS3
SE_02_078100758 chr1:40690453-40730166 Sample_02_0781 Lymphoma Pfeiffer_DMSO 758 12 1014 112 1 151 721 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_122500320 chr1:40690567-40713530 Sample_02_1225 Bone marrow RAJI 320 10 590 67 1 129 534 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_115300258 chr1:40690599-40722815 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 258 2 821 87 1 145 607 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_051700275 chr1:40690671-40736654 Sample_02_0517 Esophagus TE5 275 12 1170 128 1 162 707 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3,KCNQ4
SE_02_115200207 chr1:40690689-40722808 Sample_02_1152 Lymphoma RL_WT_gRNA1 207 2 821 87 1 145 601 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_050600282 chr1:40690692-40736655 Sample_02_0506 Esophagus TE5_1 282 11 1170 128 1 162 704 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3,KCNQ4
SE_02_076300788 chr1:40690706-40713764 Sample_02_0763 Podocyte podocyte_DEX 788 5 590 67 1 129 526 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_138800194 chr1:40690718-40713778 Sample_02_1388 Peripheral blood JB6_ALK+ 194 4 590 67 1 132 524 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_115500321 chr1:40690831-40722845 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 321 4 814 85 1 145 587 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_103400462 chr1:40690843-40725097 Sample_02_1034 Blood AML cell 462 8 867 92 1 147 691 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_115400301 chr1:40690855-40722828 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 301 2 814 85 1 145 586 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_130200221 chr1:40690972-40725977 Sample_02_1302 Lymphoma RL DMSO 221 8 881 93 1 151 679 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_130400422 chr1:40691084-40722369 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 422 6 802 84 1 144 566 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_106500361 chr1:40691227-40714227 Sample_02_1065 Lymphoma KARPAS-422_DMSO_8d 361 5 590 67 1 135 486 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_045700654 chr1:40691554-40713617 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 654 6 562 64 1 127 430 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_130300344 chr1:40691643-40722717 Sample_02_1303 Lymphoma RL_tazemetostat 344 10 790 84 1 142 490 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3
SE_02_122900492 chr1:40691673-40734276 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 492 17 1086 119 1 150 581 NFYC,NFYC-AS1,MIR30E,MIR30C1,RIMS3,KCNQ4
SE_02_077000716 chr1:40693881-40736697 Sample_02_0770 Ovary OVCA429_shLuc 716 16 1071 119 1 129 396 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1,KCNQ4
SE_02_148000948 chr1:40694013-40727525 Sample_02_1480 Bone MHH-ES-1 948 8 828 94 1 117 396 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_012400474 chr1:40694357-40728535 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 474 4 849 94 1 117 396 NFYC,MIR30E,MIR30C1,RIMS3,LOC100130557
SE_02_151300349 chr1:40694382-40723834 Sample_02_1513 Lung Transitional AT2->1 cells 349 8 725 75 1 112 372 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_098900492 chr1:40694515-40750483 Sample_02_0989 Kidney kidney cortex_WT 492 15 1393 144 2 154 526 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1,KCNQ4
SE_02_101701594 chr1:40694912-40737278 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1594 10 1057 111 1 129 396 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1,KCNQ4
SE_02_006400346 chr1:40696146-40712609 Sample_02_0064 Embryo DN-Early_G1 346 2 404 47 1 92 106 NFYC,MIR30E,MIR30C1,RIMS3,LOC100130557
SE_02_089200896 chr1:40696172-40744430 Sample_02_0892 Heart left ventricle_LV1215 896 12 1205 127 1 137 374 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1,KCNQ4
SE_02_077400131 chr1:40696667-40717761 Sample_02_0774 Prostate 22Rv1_delSite1_Clone11/12-D8 131 7 515 55 1 103 158 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_060300442 chr1:40698782-40713962 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 442 4 380 48 1 91 158 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_053001059 chr1:40698832-40714290 Sample_02_0530 Mammary gland MCF10A 1059 8 384 49 1 95 158 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_054800229 chr1:40699339-40714365 Sample_02_0548 Blood THP-1_24h with EtOH 229 4 369 47 1 95 158 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_092300721 chr1:40701271-40743578 Sample_02_0923 Heart fetal heart_PCW10_12522 721 9 1054 114 1 126 374 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1,KCNQ4
SE_02_064501736 chr1:40702457-40713691 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1736 6 260 33 1 82 158 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_092901288 chr1:40702488-40736301 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1288 18 833 94 1 115 336 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1,KCNQ4
SE_02_153300476 chr1:40703397-40723842 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 476 4 480 52 1 98 313 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_151200462 chr1:40703540-40723847 Sample_02_1512 Lung Purified AT2 cells 462 6 478 51 1 98 313 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_01_000200082 chr1:40704151-40716683 Sample_01_0002 Prostate 22Rv1_10nM17beta-hydroxy-5alpha-androstan-3-one 82 3 285 33 1 86 158 NFYC,MIR30E,MIR30C1,RIMS3,LOC100130557
SE_02_032700419 chr1:40704305-40759610 Sample_02_0327 Liver hepatocytes_d6 419 11 1388 137 2 245 712 MIR30E,NFYC,MIR30C1,KCNQ4,RIMS3,LOC100130557
SE_02_089800676 chr1:40704352-40746313 Sample_02_0898 Heart left ventricle_LV1356 676 15 1014 104 1 129 374 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1,KCNQ4
SE_02_032500367 chr1:40704379-40760372 Sample_02_0325 Liver hepatocytes_d1 367 13 1409 139 2 246 712 MIR30E,NFYC,MIR30C1,KCNQ4,RIMS3,LOC100130557
SE_00_005201181 chr1:40704444-40746071 Sample_00_0052 Heart left ventricle 3y 1181 16 1010 104 1 127 374 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1,KCNQ4
SE_02_038200548 chr1:40704487-40743911 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 548 8 969 102 1 121 374 NFYC,KCNQ4,MIR30E,MIR30C1,RIMS3,LOC100130557
SE_02_075701096 chr1:40704493-40717236 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 1096 4 292 31 1 87 158 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_077300070 chr1:40704631-40717127 Sample_02_0773 Prostate 22Rv1_delSite4_Clone22/23-F8 70 6 288 31 1 86 158 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_01_000100080 chr1:40704718-40716878 Sample_01_0001 Prostate 22Rv1 80 4 280 30 1 84 158 NFYC,MIR30E,MIR30C1,RIMS3,LOC100130557
SE_02_077200074 chr1:40704914-40717417 Sample_02_0772 Prostate 22Rv1_delSite1_Clone11/12-F6 74 7 285 30 1 85 158 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_089301035 chr1:40704986-40714623 Sample_02_0893 Heart left ventricle_LV1226 1035 3 219 26 1 84 158 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_006700470 chr1:40707553-40713692 Sample_02_0067 Embryo AzH-G2/M 470 1 135 13 1 77 158 NFYC,MIR30E,MIR30C1,RIMS3,LOC100130557
SE_02_006500733 chr1:40707684-40712618 Sample_02_0065 Embryo KO2-Late_G1 733 1 109 11 1 74 106 NFYC,MIR30E,MIR30C1,RIMS3,LOC100130557
SE_02_012500488 chr1:40707785-40712895 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 488 1 115 11 1 74 139 NFYC,MIR30E,MIR30C1,RIMS3,LOC100130557
SE_02_006600231 chr1:40707903-40712514 Sample_02_0066 Embryo AzL-S_phase 231 1 107 10 1 73 98 NFYC,MIR30E,MIR30C1,RIMS3,LOC100130557
SE_02_091101114 chr1:40708021-40720864 Sample_02_0911 Heart left ventricle_DCM_LV1290 1114 5 309 24 1 92 158 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_075400943 chr1:40708342-40716783 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 943 2 199 17 1 84 158 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_091801220 chr1:40708560-40716927 Sample_02_0918 Heart left ventricle_DCM_LV1437 1220 4 198 16 1 84 158 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1
SE_02_151400150 chr1:40708769-40744764 Sample_02_1514 Lung Differentiated AT1-like cells 150 11 897 89 1 119 374 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1,KCNQ4
SE_02_084100309 chr1:40710597-40715085 Sample_02_0841 Blood THP-1_untr 309 1 106 13 1 29 85 NFYC,MIR30E,MIR30C1,RIMS3,NFYC-AS1,KCNQ4
Genomic distribution of SEs associated with RIMS3
Genome Browser

The strength of the tissue affected by the gene

Expression of RIMS3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)