SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000156873
Gene: PHKG2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:30748293-30761176 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_012400113 chr16:30657150-30701644 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 113 6 1172 59 1 393 2478 FBRS,SRCAP,PRR14,ZNF689,PHKG2,SNORA30
SE_02_003901102 chr16:30688353-30700006 Sample_02_0039 Embryo AFG 1102 3 280 20 0 51 451 SRCAP,PRR14,SNORA30,FBRS,PHKG2
SE_00_004000518 chr16:30694590-30700041 Sample_00_0040 Spleen spleen_30y 518 2 150 7 0 51 454 SRCAP,PRR14,SNORA30,FBRS,PHKG2,RNF40
SE_02_033000610 chr16:30695171-30699875 Sample_02_0330 Endoderm MHG 610 2 129 5 0 49 434 SRCAP,PRR14,SNORA30,FBRS,PHKG2
SE_02_004800822 chr16:30697566-30699919 Sample_02_0048 Embryo endodermal CyT49_HE 822 1 71 3 0 49 426 SRCAP,PRR14,SNORA30,FBRS,PHKG2
SE_02_004600518 chr16:30697593-30700013 Sample_02_0046 Embryo endodermal CyT49_ES_D10 518 1 71 3 0 51 438 SRCAP,PRR14,SNORA30,FBRS,PHKG2
SE_02_004500471 chr16:30697679-30700036 Sample_02_0045 Embryo endodermal CyT49_ES_D7 471 1 67 3 0 51 435 SRCAP,PRR14,SNORA30,FBRS,PHKG2
SE_00_001600178 chr16:30697696-30699852 Sample_00_0016 Foreskin iPS-DF-19.11 183 1 61 3 0 49 415 SRCAP,PRR14,SNORA30,FBRS,PHKG2
SE_02_003801420 chr16:30697763-30700118 Sample_02_0038 Embryo DE 1420 1 67 3 0 51 436 SRCAP,PRR14,SNORA30,FBRS,PHKG2
SE_00_001000904 chr16:30697772-30699832 Sample_00_0010 Embryo endodermal-cell 904 1 57 3 0 49 405 SRCAP,PRR14,SNORA30,FBRS,PHKG2
SE_00_000600883 chr16:30697785-30700135 Sample_00_0006 Blood CD14-positive-monocyte 883 1 68 3 0 51 435 SRCAP,PRR14,SNORA30,FBRS,PHKG2
SE_00_002401164 chr16:30697826-30699990 Sample_00_0024 Embryo mesendoderm 1164 1 62 3 0 51 421 SRCAP,PRR14,SNORA30,FBRS,PHKG2
SE_02_151000445 chr16:30700536-30746638 Sample_02_1510 Lung H3122_LR_Pano 445 15 1239 52 1 396 3753 SNORA30,TMEM265,SRCAP,RNF40,ZNF629,PRR14,C16ORF93,LOC730183,PHKG2,FBRS
SE_02_104603293 chr16:30713204-30738138 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3293 9 657 22 1 222 1920 SRCAP,RNF40,ZNF629,SNORA30,C16ORF93,LOC730183,PHKG2,TMEM265
SE_02_047800938 chr16:30720230-30746006 Sample_02_0478 Colon normal colon mucosa 938 14 677 16 0 297 2631 TMEM265,SRCAP,RNF40,ZNF629,SNORA30,C16ORF93,LOC730183,PHKG2
SE_02_081800433 chr16:30738219-30744652 Sample_02_0818 Ovary High-grade serous ovarian cancer 433 1 171 2 0 102 859 TMEM265,SRCAP,RNF40,ZNF629,SNORA30,C16ORF93,LOC730183,PHKG2
SE_02_093801153 chr16:30739531-30742987 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1153 1 95 1 0 45 357 TMEM265,SRCAP,RNF40,ZNF629,SNORA30,C16ORF93,LOC730183,PHKG2
SE_01_004100691 chr16:30739620-30742708 Sample_01_0041 Skin keratinocyte 691 1 82 1 0 41 332 SRCAP,SNORA30,PHKG2,ZNF629,C16ORF93,RNF40
SE_00_002900885 chr16:30761186-30787688 Sample_00_0029 Ovary ovary 885 5 661 35 2 258 3658 C16ORF93,ZNF629,RNF40,PHKG2
SE_00_003401165 chr16:30761489-30788200 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 1165 4 662 35 2 256 3593 C16ORF93,ZNF629,RNF40,PHKG2
SE_02_124400483 chr16:30764860-30778263 Sample_02_1244 Brain KCNR_ATRA 483 3 354 22 1 99 1604 RNF40,ZNF629,C16ORF93,PHKG2,TMEM265
SE_02_089201034 chr16:30766148-30815035 Sample_02_0892 Heart left ventricle_LV1215 1034 8 1106 71 4 219 2876 ZNF629,RNF40,C16ORF93,PHKG2,TMEM265
SE_02_089000987 chr16:30766205-30814980 Sample_02_0890 Heart left ventricle_LV1200 987 8 1105 71 4 218 2868 ZNF629,RNF40,C16ORF93,PHKG2,TMEM265
SE_02_103501162 chr16:30770751-30784110 Sample_02_1035 Mammary gland HCC70_Vehicle 1162 5 306 21 0 116 1962 ZNF629,RNF40,C16ORF93,PHKG2,TMEM265
SE_02_131900377 chr16:30771270-30776785 Sample_02_1319 Connective Tissue HT1080_DDIT3 377 3 127 10 0 24 838 RNF40,ZNF629,C16ORF93,PHKG2,TMEM265
SE_02_046501029 chr16:30774340-30781971 Sample_02_0465 Adipose subcutaneous adipocytes 1029 5 189 13 0 30 1135 ZNF629,RNF40,C16ORF93,PHKG2,TMEM265
SE_01_011200506 chr16:30774798-30778162 Sample_01_0112 Embryonic kidney HEK293_encode 506 3 97 7 0 8 358 RNF40,ZNF629,C16ORF93,PHKG2,TMEM265
SE_02_140500292 chr16:30774878-30780258 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 292 3 145 9 0 17 703 ZNF629,RNF40,C16ORF93,PHKG2,TMEM265
SE_02_143301672 chr16:30775015-30780321 Sample_02_1433 Bone A673 STAG2 null 1672 5 144 9 0 17 686 ZNF629,RNF40,C16ORF93,PHKG2,TMEM265
SE_02_140400212 chr16:30775060-30778797 Sample_02_1404 Embryonic kidney HEK293_siBAHD1_WT 212 2 106 8 0 12 386 ZNF629,RNF40,C16ORF93,PHKG2,TMEM265
SE_02_103600942 chr16:30775205-30776227 Sample_02_1036 Mammary gland HCC70_XY018 942 1 33 1 0 5 229 RNF40,ZNF629,C16ORF93,PHKG2,TMEM265
SE_02_077501457 chr16:30789776-30849123 Sample_02_0775 Pancreas EndoC-BH1_SE 1457 18 1357 90 6 20 137 BCL7C,RNF40,MIR762,ZNF629,MIR762HG,C16ORF93,CTF1,PHKG2,MIR4519,TMEM265
SE_02_104801936 chr16:30793670-30815056 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1936 6 470 30 2 2 0 RNF40,C16ORF93,ZNF629,PHKG2
SE_02_103500973 chr16:30797329-30857890 Sample_02_1035 Mammary gland HCC70_Vehicle 973 31 1367 88 6 20 137 BCL7C,RNF40,MIR762,ZNF629,MIR762HG,C16ORF93,PHKG2,MIR4519,CTF1
Genomic distribution of SEs associated with PHKG2
Genome Browser

The strength of the tissue affected by the gene

Expression of PHKG2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)