SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000204138
Gene: PHACTR4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:28369582-28500364 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_092900479 chr1:28280111-28326807 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 479 23 1119 109 0 0 392 SESN2,MED18,ATPIF1,PHACTR4,DNAJC8,PTAFR,AL353354.1
SE_00_002000490 chr1:28280821-28330237 Sample_00_0020 Large intestine large-intestine_108d 490 7 1184 115 0 0 423 MED18,SESN2,PHACTR4,ATPIF1,DNAJC8
SE_02_025700206 chr1:28283810-28330403 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 206 7 1096 107 0 0 82 MED18,PHACTR4,SESN2,ATPIF1
SE_02_047600321 chr1:28288136-28324442 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 321 17 844 82 0 0 0 MED18,PHACTR4,SESN2
SE_02_103000591 chr1:28300365-28354354 Sample_02_1030 Colon DKO 591 13 1302 108 0 0 386 MED18,PHACTR4,SESN2
SE_02_153000793 chr1:28304441-28332572 Sample_02_1530 Peripheral blood neutrophils_0BA0X 793 4 673 61 0 0 140 MED18,PHACTR4,SESN2,PPP1R8
SE_02_152900923 chr1:28305099-28331046 Sample_02_1529 Peripheral blood neutrophils_0BC75 923 7 631 60 0 0 140 MED18,PHACTR4,SESN2,PPP1R8
SE_02_139000176 chr1:28312779-28330365 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 176 5 401 38 0 0 82 MED18,PHACTR4
SE_02_157900686 chr1:28313358-28359283 Sample_02_1579 Renal 786-M1A 686 12 1100 101 0 0 386 MED18,PHACTR4
SE_02_139800565 chr1:28338715-28358843 Sample_02_1398 Bone U2OS_siNC 565 13 509 44 0 0 0 MED18,PHACTR4
SE_02_139900371 chr1:28339381-28357248 Sample_02_1399 Bone U2OS_siMLL3.1 371 11 448 34 0 0 0 MED18,PHACTR4
SE_02_093000828 chr1:28339416-28355729 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 828 10 411 26 0 0 0 MED18,PHACTR4
SE_02_113600671 chr1:28340044-28354939 Sample_02_1136 Bone U2OS-anaphase/telophase 671 6 381 20 0 0 0 MED18,PHACTR4
SE_02_077000609 chr1:28340116-28418293 Sample_02_0770 Ovary OVCA429_shLuc 609 29 1992 285 0 0 173 PHACTR4,MED18
SE_02_094600412 chr1:28340150-28355370 Sample_02_0946 Tongue HN12 412 6 385 20 0 0 0 MED18,PHACTR4
SE_02_048101952 chr1:28340618-28356019 Sample_02_0481 Mammary gland MDA-MB231 1952 5 387 21 0 0 0 MED18,PHACTR4
SE_02_113400421 chr1:28340877-28354072 Sample_02_1134 Bone U2OS-interphase 421 7 334 17 0 0 0 MED18,PHACTR4
SE_02_072100712 chr1:28341056-28355018 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 712 8 354 19 0 0 0 MED18,PHACTR4
SE_02_064701358 chr1:28341172-28355139 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1358 10 355 19 0 0 0 MED18,PHACTR4
SE_02_065800219 chr1:28341896-28354948 Sample_02_0658 Tracheobronchial epithelial HTBE_H5N1_18h 219 5 332 18 0 0 0 MED18,PHACTR4
SE_02_099000845 chr1:28342013-28355703 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 845 6 347 19 0 0 0 MED18,PHACTR4
Genomic distribution of SEs associated with PHACTR4
Genome Browser

The strength of the tissue affected by the gene

Expression of PHACTR4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)