Gene overview
| Strategies/Algorithm: | proximal | Ensembl ID: | ENSG00000265369 |
| Gene: | PCAT18 | Gene type: | lncRNA |
| Strand: | - | External links: |
|
| Genomic region: | chr18:26687621-26703638 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_120501049 | chr18:26636318-26658863 |
Sample_02_1205 | Brain | NB3 | 1049 | 9 | 683 | 32 | 3 | 123 | 131 | KCTD1,PCAT18,MIR8057 |
| SE_02_075500601 | chr18:26642317-26665162 |
Sample_02_0755 | Embryo | ES-derived progenitors_DE FOXA2 -/- | 601 | 4 | 654 | 48 | 3 | 158 | 70 | KCTD1,PCAT18 |
| SE_02_069700133 | chr18:26645704-26661138 |
Sample_02_0697 | Lung | NCI-H1048-cas9_sgHROSA | 133 | 9 | 423 | 35 | 2 | 115 | 70 | KCTD1,PCAT18 |
| SE_02_075201151 | chr18:26647159-26664545 |
Sample_02_0752 | Embryo | ES-derived progenitors_DE_wild type | 1151 | 4 | 457 | 41 | 3 | 146 | 70 | KCTD1,PCAT18 |
| SE_02_068500108 | chr18:26648760-26660982 |
Sample_02_0685 | Lung | NCI-H1048_no infection | 108 | 3 | 352 | 33 | 2 | 105 | 70 | KCTD1,PCAT18 |
| SE_02_069800244 | chr18:26648805-26661135 |
Sample_02_0698 | Lung | NCI-H1048-cas9_sgPOU2F3 | 244 | 3 | 355 | 33 | 2 | 105 | 70 | KCTD1,PCAT18 |
| SE_02_068800175 | chr18:26649995-26660046 |
Sample_02_0688 | Lung | NCI-H211_no infection | 175 | 2 | 292 | 30 | 2 | 97 | 70 | KCTD1,PCAT18 |
| SE_02_082000684 | chr18:26708408-26717572 |
Sample_02_0820 | Haematopoietic and lymphoid tissue | SET-2_WT_DMSO | 684 | 2 | 248 | 32 | 0 | 42 | 0 | PCAT18 |
| SE_02_047500902 | chr18:26740852-26757773 |
Sample_02_0475 | Induced hepatocyte-like cells | hepatocyte-like cells | 902 | 9 | 374 | 16 | 2 | 62 | 0 | PCAT18 |
| SE_02_140700507 | chr18:26740852-26766608 |
Sample_02_1407 | Prostate | LNCaP_R1881 4h | 507 | 7 | 638 | 23 | 2 | 64 | 0 | PCAT18 |
| SE_02_123400318 | chr18:26742102-26779001 |
Sample_02_1234 | Mammary gland | T47D_Full | 318 | 15 | 959 | 28 | 4 | 118 | 0 | PCAT18 |
| SE_02_067300370 | chr18:26742923-26766809 |
Sample_02_0673 | Prostate | LNCAP_FA | 370 | 6 | 600 | 20 | 2 | 63 | 0 | PCAT18 |
Genomic distribution of SEs associated with PCAT18