SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000229873
Gene: OGFR-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr20:62800627-62805587 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_097100194 chr20:62651061-62756784 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 194 20 3995 290 20 178 2317 NTSR1,SLCO4A1,SLCO4A1-AS1,OGFR,OGFR-AS1,LINC00659,MRGBP
SE_02_050200033 chr20:62669806-62794316 Sample_02_0502 Blood HL-60_PMA_16h 33 59 4536 368 21 137 2135 LINC00659,SLCO4A1,NTSR1,OGFR,OGFR-AS1,COL9A3,MRGBP,SLCO4A1-AS1
SE_02_133000138 chr20:62675136-62763580 Sample_02_1330 Blood AMU-AML1 138 24 3175 254 18 127 1288 NTSR1,OGFR,OGFR-AS1,LINC00659,MRGBP,SLCO4A1,SLCO4A1-AS1
SE_02_105800140 chr20:62675672-62794230 Sample_02_1058 Bone A673_SA2 Rescue 140 34 4246 350 20 135 1968 LINC00659,NTSR1,OGFR,OGFR-AS1,COL9A3,MRGBP,SLCO4A1,SLCO4A1-AS1
SE_02_065900140 chr20:62688554-62773185 Sample_02_0659 Lung H23 140 24 3075 241 15 103 1288 NTSR1,OGFR,OGFR-AS1,COL9A3,LINC00659,MRGBP,SLCO4A1,SLCO4A1-AS1
SE_02_132000027 chr20:62702459-62794233 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 27 25 3210 277 13 100 1968 LINC00659,NTSR1,OGFR,OGFR-AS1,COL9A3,MRGBP,SLCO4A1-AS1
SE_02_155900235 chr20:62703428-62762046 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 235 25 2027 171 11 91 1096 NTSR1,OGFR,OGFR-AS1,LINC00659,MRGBP,SLCO4A1-AS1
SE_02_156500229 chr20:62711910-62761632 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 229 9 1679 146 11 47 646 NTSR1,OGFR,OGFR-AS1,LINC00659,MRGBP,SLCO4A1-AS1
SE_02_138400660 chr20:62725203-62770388 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 660 10 1559 125 7 36 934 NTSR1,OGFR,OGFR-AS1,COL9A3,LINC00659,MRGBP
SE_02_114400007 chr20:62725594-62772417 Sample_02_1144 Peripheral nerve S462_PRC2 mutant 7 13 1644 137 7 31 934 NTSR1,OGFR,OGFR-AS1,COL9A3,LINC00659,MRGBP
SE_02_105900186 chr20:62729037-62794238 Sample_02_1059 Bone A673_WT 186 19 2282 196 8 36 1614 LINC00659,NTSR1,OGFR,OGFR-AS1,COL9A3,MRGBP
SE_02_147300188 chr20:62729037-62794238 Sample_02_1473 Bone A-673 188 19 2282 196 8 36 1614 LINC00659,NTSR1,OGFR,OGFR-AS1,COL9A3,MRGBP
SE_02_095800254 chr20:62734988-62797784 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 254 15 2174 185 8 47 1936 LINC00659,MRGBP,NTSR1,OGFR,OGFR-AS1,COL9A3,DPH3P1
SE_02_087300049 chr20:62734996-62779491 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 49 13 1645 135 7 31 1614 LINC00659,NTSR1,OGFR,OGFR-AS1,COL9A3,MRGBP
SE_02_148100556 chr20:62759284-62794300 Sample_02_1481 Bone MIC 556 8 1269 108 3 18 1393 LINC00659,NTSR1,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_107800523 chr20:62759882-62786456 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 523 6 1010 81 2 17 1382 LINC00659,NTSR1,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_093400646 chr20:62760561-62774929 Sample_02_0934 Embryo H7-WT 646 5 557 50 2 14 843 LINC00659,NTSR1,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_097400423 chr20:62760603-62794285 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 423 6 1203 108 3 13 1226 LINC00659,NTSR1,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_107000143 chr20:62760785-62796164 Sample_02_1070 Blood SupT1_WT 143 6 1233 110 2 13 1178 LINC00659,NTSR1,OGFR,OGFR-AS1,MRGBP,COL9A3,DPH3P1
SE_02_147500517 chr20:62760786-62794329 Sample_02_1475 Bone CHLA-25 517 5 1200 107 2 13 1177 LINC00659,NTSR1,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_147600746 chr20:62760794-62794205 Sample_02_1476 Bone EW-1 746 6 1197 107 2 13 1171 LINC00659,NTSR1,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_062900037 chr20:62761364-62794311 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 37 8 1178 106 2 13 1015 LINC00659,NTSR1,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_147900102 chr20:62764426-62776970 Sample_02_1479 Bone EW-7 102 1 497 47 1 7 647 LINC00659,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_075800659 chr20:62764696-62794175 Sample_02_0758 Peripheral blood REH 659 13 1059 95 2 8 680 LINC00659,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_087200292 chr20:62765141-62794079 Sample_02_0872 Colon HCT116_siCtrl-5FU 292 9 1043 94 2 8 680 LINC00659,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_116200648 chr20:62765385-62772509 Sample_02_1162 Stomach YCC11 648 1 285 23 1 2 0 MRGBP,OGFR,COL9A3,OGFR-AS1,LINC00659
SE_02_087400232 chr20:62766188-62794084 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 232 8 1001 89 2 8 680 LINC00659,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_129300042 chr20:62767816-62781121 Sample_02_1293 Lung JHU-LX22-SCLC PDX 42 5 552 55 1 7 680 LINC00659,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_147400487 chr20:62767867-62794214 Sample_02_1474 Bone CHLA-10 487 6 934 89 2 8 680 LINC00659,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_123900316 chr20:62771280-62776940 Sample_02_1239 Skin Waga_virus_positive 316 2 239 30 0 5 636 LINC00659,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_103602698 chr20:62772037-62796160 Sample_02_1036 Mammary gland HCC70_XY018 2698 4 810 77 1 6 680 LINC00659,OGFR,OGFR-AS1,MRGBP,COL9A3,DPH3P1
SE_02_104701509 chr20:62773465-62776899 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1509 1 138 15 0 5 611 LINC00659,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_063000468 chr20:62774358-62794283 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 468 3 673 60 1 2 497 LINC00659,MRGBP,OGFR,COL9A3,OGFR-AS1
SE_02_063100410 chr20:62778871-62794234 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 410 3 474 43 1 1 0 MRGBP,OGFR,COL9A3,OGFR-AS1,LINC00659
SE_02_083501191 chr20:62778965-62797495 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 1191 7 543 49 1 16 322 MRGBP,OGFR,OGFR-AS1,COL9A3,LINC00659,DPH3P1
SE_02_155900759 chr20:62781820-62794304 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 759 4 361 32 1 1 0 MRGBP,OGFR,COL9A3,OGFR-AS1,LINC00659
SE_02_083301100 chr20:62781868-62797654 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 1100 6 431 38 1 16 322 MRGBP,OGFR,OGFR-AS1,COL9A3,LINC00659,DPH3P1
SE_02_156001110 chr20:62782048-62796946 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1110 3 404 36 1 11 189 MRGBP,OGFR,OGFR-AS1,COL9A3,LINC00659,DPH3P1
SE_02_156100257 chr20:62784631-62794218 Sample_02_1561 Gastrointestinal Stromal GIST-10_PDGFRA e1 257 2 294 29 1 1 0 MRGBP,OGFR,COL9A3,OGFR-AS1,LINC00659
SE_02_147000454 chr20:62791483-62796949 Sample_02_1470 Umbilical Vein H441 454 1 120 11 1 11 190 MRGBP,OGFR,OGFR-AS1,COL9A3,LINC00659,DPH3P1
SE_02_099100854 chr20:62792557-62797356 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 854 1 110 10 1 15 307 MRGBP,OGFR,OGFR-AS1,COL9A3,LINC00659,DPH3P1
SE_02_115000069 chr20:62793945-62797350 Sample_02_1150 Kidney WT 9-12_Nrf2 knockout_vehicle 69 1 73 6 0 15 307 MRGBP,OGFR,OGFR-AS1,COL9A3,LINC00659,DPH3P1
SE_02_155301131 chr20:62807430-62833535 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 1131 8 1113 118 1 102 4003 OGFR,COL9A3,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_127801039 chr20:62808086-62848140 Sample_02_1278 Chordoma UCH1_DMSO_48h 1039 11 1693 182 2 146 4678 OGFR,TCFL5,DPH3P1,COL9A3,OGFR-AS1,MRGBP,LINC00659
SE_02_143400880 chr20:62808522-62834617 Sample_02_1434 Trophoblast trophoblast stem cells 880 6 1122 123 1 97 3731 OGFR,COL9A3,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_103602152 chr20:62808696-62853616 Sample_02_1036 Mammary gland HCC70_XY018 2152 11 1860 202 2 147 4817 OGFR,TCFL5,DPH3P1,COL9A3,OGFR-AS1,MRGBP,LINC00659
SE_02_138500299 chr20:62809153-62852569 Sample_02_1385 Other iPSCs 299 15 1796 194 2 147 4742 OGFR,TCFL5,DPH3P1,COL9A3,OGFR-AS1,MRGBP,LINC00659
SE_02_061500740 chr20:62809395-62825037 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 740 3 657 69 1 54 2307 OGFR,COL9A3,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_098200253 chr20:62809776-62830694 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 253 9 887 91 1 94 3411 OGFR,COL9A3,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_103900381 chr20:62812782-62831108 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 381 5 789 78 1 79 3016 OGFR,COL9A3,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_143301046 chr20:62813705-62850706 Sample_02_1433 Bone A673 STAG2 null 1046 20 1546 165 2 129 3755 OGFR,TCFL5,DPH3P1,COL9A3,OGFR-AS1,MRGBP,LINC00659
SE_02_116000650 chr20:62813738-62836311 Sample_02_1160 Embryo H1_shLuc 650 5 974 98 1 84 3030 OGFR,COL9A3,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_085800840 chr20:62814383-62829538 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 840 3 634 68 1 70 2278 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_154100413 chr20:62814432-62833381 Sample_02_1541 Nasopharyngeal HNE1 413 8 802 82 1 78 2798 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_127300961 chr20:62814475-62848117 Sample_02_1273 Cervix HeLa 961 12 1423 148 2 127 3636 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_153900358 chr20:62814709-62834644 Sample_02_1539 Nasopharyngeal C666-1 358 6 855 85 1 78 2798 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_096300705 chr20:62814749-62826458 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 705 4 489 45 1 43 1694 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_055800503 chr20:62814789-62832581 Sample_02_0558 iPSCs FX52 iPSCs mock 503 5 749 73 1 77 2705 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_052100226 chr20:62814897-62825058 Sample_02_0521 Colon SW480 226 2 412 37 1 35 1387 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_095800216 chr20:62814903-62825423 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 216 3 432 39 1 35 1455 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_057101037 chr20:62814952-62819984 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 1037 2 182 18 1 19 625 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_097100458 chr20:62815009-62826506 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 458 6 473 45 1 43 1694 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_079800204 chr20:62815783-62821058 Sample_02_0798 Brain 1919 204 2 186 22 1 21 688 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_085600460 chr20:62815805-62820194 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 460 1 154 17 1 21 674 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_085700424 chr20:62815816-62821107 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 424 1 187 22 1 21 703 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_096200849 chr20:62815864-62820979 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 849 1 181 22 1 21 674 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_117900382 chr20:62815900-62825049 Sample_02_1179 Brain GBM08 382 3 374 36 1 35 1382 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_119300243 chr20:62815920-62848319 Sample_02_1193 Brain GBM27 243 4 1372 143 2 127 3636 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_080200219 chr20:62815937-62820577 Sample_02_0802 Brain 3094 219 2 166 17 1 21 674 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_117300960 chr20:62816054-62821282 Sample_02_1173 Brain GBM01 960 1 189 22 1 22 752 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_096600809 chr20:62816068-62832710 Sample_02_0966 Brain H3.3K27M_JN29-BS3 809 7 708 71 1 77 2705 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_117600574 chr20:62816275-62832567 Sample_02_1176 Brain GBM04 574 5 699 71 1 77 2705 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_101300466 chr20:62816511-62832457 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 466 7 690 68 0 77 2705 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_063300473 chr20:62817031-62833462 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 473 8 725 72 0 74 2730 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_121200420 chr20:62817132-62825489 Sample_02_1212 Brain GBM30 420 4 373 34 0 30 1359 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_116200464 chr20:62817551-62824779 Sample_02_1162 Stomach YCC11 464 1 335 30 0 26 1102 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_114600064 chr20:62818671-62836826 Sample_02_1146 Peripheral nerve STS26T PRC2 WT 64 11 838 79 1 71 2604 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_107000288 chr20:62818751-62836710 Sample_02_1070 Blood SupT1_WT 288 9 824 78 1 71 2583 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_138400718 chr20:62818960-62850948 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 718 9 1359 140 1 113 3208 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_087400267 chr20:62819153-62836289 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 267 10 775 70 0 68 2445 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_087300372 chr20:62819591-62830600 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 372 4 488 47 0 58 1994 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_077501955 chr20:62821727-62848785 Sample_02_0775 Pancreas EndoC-BH1_SE 1955 11 1185 123 1 103 2748 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_073900047 chr20:62822743-62901758 Sample_02_0739 Blood Nalm6 47 18 2985 330 6 268 5470 DIDO1,DPH3P1,TCFL5,COL9A3,LINC00659,OGFR-AS1,MRGBP,GID8,OGFR
SE_02_075000424 chr20:62823082-62859364 Sample_02_0750 Lymphoma Rec-1_GSI 424 16 1484 168 1 114 2851 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_073300214 chr20:62823119-62861762 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 214 10 1558 178 2 163 3277 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_075100550 chr20:62823167-62859531 Sample_02_0751 Lymphoma Rec-1_WO 550 14 1483 168 1 119 2865 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_072900261 chr20:62824381-62859575 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 261 10 1420 161 1 119 2828 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_088500056 chr20:62824450-62899804 Sample_02_0885 Blood NALM6_2 56 15 2825 311 5 264 5406 DIDO1,DPH3P1,TCFL5,COL9A3,LINC00659,OGFR-AS1,MRGBP,GID8,OGFR
SE_02_072800430 chr20:62824458-62860300 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 430 9 1451 165 2 130 2853 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_057300189 chr20:62824469-62859603 Sample_02_0573 Blood Nalm6_1 189 9 1415 160 1 118 2809 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_073100511 chr20:62824519-62839415 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 511 4 707 64 1 66 1940 COL9A3,OGFR,TCFL5,OGFR-AS1,MRGBP,LINC00659,DPH3P1
SE_02_073000724 chr20:62826298-62859753 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 724 7 1341 157 1 109 2394 TCFL5,COL9A3,DPH3P1,OGFR,OGFR-AS1,MRGBP,LINC00659
SE_02_073200393 chr20:62828625-62861710 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 393 7 1303 151 2 137 2389 TCFL5,COL9A3,DPH3P1,OGFR-AS1,MRGBP,OGFR
Genomic distribution of SEs associated with OGFR-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of OGFR-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)