SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000131697
Gene: NPHP4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:5862811-5992473 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_009800633 chr1:6000906-6028017 Sample_01_0098 Heart left ventricle_51y 633 6 862 43 0 59 190 KCNAB2,NPHP4
SE_00_004600876 chr1:6000923-6016313 Sample_00_0046 Heart right ventricle_34y 876 9 516 22 0 49 0 KCNAB2,NPHP4
SE_01_002400570 chr1:6013908-6038017 Sample_01_0024 Blood CD14-positive-monocyte 570 4 721 44 0 27 363 KCNAB2,NPHP4
SE_02_018500476 chr1:6013960-6029094 Sample_02_0185 Skin UACC257 476 3 449 27 0 19 190 KCNAB2,NPHP4
SE_02_153100460 chr1:6014545-6041525 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 460 9 827 50 0 25 482 KCNAB2,NPHP4
SE_02_143100795 chr1:6022132-6040131 Sample_02_1431 Blood T cell 795 2 557 32 0 17 363 KCNAB2,NPHP4
SE_02_122300988 chr1:6024088-6028791 Sample_02_1223 Bone marrow KMS28BM 988 2 148 7 0 7 190 KCNAB2,NPHP4
SE_02_092800640 chr1:6024457-6040897 Sample_02_0928 Peripheral blood neutrophils_Ecoli 640 3 521 29 0 20 482 KCNAB2,NPHP4
SE_02_122000610 chr1:6024629-6029050 Sample_02_1220 Bone marrow JJN3 610 1 143 7 0 7 190 KCNAB2,NPHP4
SE_02_046000436 chr1:6024670-6040660 Sample_02_0460 Blood ME-1_I-10-49_6h 436 7 507 28 0 20 427 KCNAB2,NPHP4
SE_02_045900414 chr1:6024672-6039132 Sample_02_0459 Blood ME-1_DMSO_6h 414 4 451 25 0 15 363 KCNAB2,NPHP4
SE_02_034300687 chr1:6024968-6031400 Sample_02_0343 Bone marrow HSPC_A0 687 1 206 9 0 7 190 KCNAB2,NPHP4
SE_00_000600482 chr1:6025075-6029964 Sample_00_0006 Blood CD14-positive-monocyte 482 1 156 7 0 7 190 KCNAB2,NPHP4
SE_02_057800724 chr1:6025080-6030399 Sample_02_0578 Blood MOLM-13_sgSIK3e4 724 1 165 8 0 7 190 KCNAB2,NPHP4
SE_02_058100703 chr1:6025125-6030497 Sample_02_0581 Blood MOLM13_empty_HG 703 1 167 8 0 7 190 KCNAB2,NPHP4
SE_02_083501146 chr1:6025126-6039807 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 1146 7 465 24 0 17 363 KCNAB2,NPHP4
SE_02_057500778 chr1:6025160-6032243 Sample_02_0575 Blood MOLM13_sgLKB1e2 778 2 213 11 0 9 190 KCNAB2,NPHP4
SE_02_048900093 chr1:6025280-6029529 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 93 1 139 6 0 7 190 KCNAB2,NPHP4
SE_02_146001218 chr1:6025413-6049361 Sample_02_1460 Blood Mutz-3 1218 4 783 46 2 40 678 KCNAB2,NPHP4
SE_02_133200706 chr1:6025450-6039587 Sample_02_1332 Blood Monomac6_CTRL 706 4 443 23 0 15 363 KCNAB2,NPHP4
SE_02_134700458 chr1:6025885-6029119 Sample_02_1347 Leukophereses leukophereses_p401 458 1 110 5 0 5 175 KCNAB2,NPHP4
SE_02_059200356 chr1:6026316-6037471 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 356 2 344 22 0 11 244 KCNAB2,NPHP4
SE_02_048500256 chr1:6026348-6029509 Sample_02_0485 Bone marrow HSCe_65y_CD34+,CD38-,Lineage- 256 1 105 5 0 3 65 KCNAB2,NPHP4
SE_02_048200116 chr1:6026349-6029539 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 116 1 106 5 0 3 65 KCNAB2,NPHP4
SE_02_048400113 chr1:6026359-6037261 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 113 2 332 22 0 9 236 KCNAB2,NPHP4
SE_02_046300297 chr1:6026380-6040881 Sample_02_0463 Blood OCI-AML3 cells 297 4 463 27 0 16 354 KCNAB2,NPHP4
SE_02_048300114 chr1:6026385-6030293 Sample_02_0483 Bone marrow HSCe_22y_CD34+,CD38-,Lineage- 114 4 123 6 0 3 60 KCNAB2,NPHP4
SE_02_048700373 chr1:6026431-6029420 Sample_02_0487 Bone marrow HSCe_71y_CD34+,CD38-,Lineage- 373 1 97 5 0 3 49 KCNAB2,NPHP4
SE_02_048800378 chr1:6027830-6029393 Sample_02_0488 Bone marrow HSCe_74y_CD34+,CD38-,Lineage- 378 2 49 4 0 1 0 KCNAB2,NPHP4
SE_02_110600132 chr1:6028475-6173002 Sample_02_1106 Brain NGP 132 77 5115 205 6 512 8120 CHD5,KCNAB2,RNF207,RPL22,LOC102724450,NPHP4
SE_02_039600979 chr1:6033851-6172337 Sample_02_0396 Skin NHEK-D 979 42 4939 194 6 508 8120 CHD5,KCNAB2,RNF207,NPHP4,RPL22
Genomic distribution of SEs associated with NPHP4
Genome Browser

The strength of the tissue affected by the gene

Expression of NPHP4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)