SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000172548
Gene: NIPAL4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:157460019-157474717 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104602256 chr5:157434944-157542785 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2256 23 2974 384 49 361 3219 NIPAL4,ADAM19
SE_02_124800336 chr5:157444466-157464557 Sample_02_1248 Bladder RT4 336 2 546 76 1 54 359 NIPAL4
SE_02_121300525 chr5:157445445-157486219 Sample_02_1213 Brain GBM31 525 20 1092 129 11 130 1803 NIPAL4,ADAM19
SE_02_048001118 chr5:157445776-157465740 Sample_02_0480 Gingival epithelial HGEP 1118 4 538 74 2 56 359 NIPAL4
SE_02_120300597 chr5:157447375-157485848 Sample_02_1203 Brain NB1 597 17 1033 125 11 127 1803 NIPAL4,ADAM19
SE_02_117300596 chr5:157448825-157479745 Sample_02_1173 Brain GBM01 596 18 847 103 9 110 1389 NIPAL4,ADAM19
SE_02_120400856 chr5:157448834-157472471 Sample_02_1204 Brain NB2 856 9 657 86 5 75 627 NIPAL4
SE_02_120500934 chr5:157448906-157485180 Sample_02_1205 Brain NB3 934 19 982 117 11 126 1803 NIPAL4,ADAM19
SE_02_119601080 chr5:157449374-157477009 Sample_02_1196 Brain GBM32 1080 17 769 97 9 92 991 NIPAL4
SE_02_101300512 chr5:157451825-157474218 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 512 8 614 76 7 88 885 NIPAL4
SE_02_100800263 chr5:157451897-157474221 Sample_02_1008 Brain Lateral temporal lobe_1T_AD 263 7 613 76 7 88 886 NIPAL4
SE_01_010900138 chr5:157463311-157576623 Sample_01_0109 Colon transverse colon_54y 138 33 3181 405 66 441 3227 NIPAL4,ADAM19
SE_02_086500067 chr5:157463330-157576585 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 67 33 3179 405 66 441 3220 NIPAL4,ADAM19
SE_02_138700032 chr5:157463872-157624581 Sample_02_1387 Peripheral blood Mac-1_ALK- 32 61 4451 591 80 493 3182 NIPAL4,ADAM19,C5ORF52,SOX30
SE_02_137500162 chr5:157463978-157571722 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 162 49 3005 385 63 416 2978 NIPAL4,ADAM19
SE_02_122400017 chr5:157464305-157640412 Sample_02_1224 Bone marrow normal plasma cell 17 82 4822 645 80 565 3399 SOX30,NIPAL4,ADAM19,C5ORF52
SE_02_104900295 chr5:157468906-157620273 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 295 83 4218 561 78 480 3060 NIPAL4,ADAM19,SOX30
SE_02_108300120 chr5:157469871-157576418 Sample_02_1083 Macula macula 120 30 2992 385 63 422 3046 NIPAL4,ADAM19
SE_02_077900158 chr5:157473295-157576266 Sample_02_0779 Lymphoma U2932 158 39 2892 372 60 401 2786 NIPAL4,ADAM19
SE_02_104300312 chr5:157474039-157586964 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 312 66 3175 413 60 400 2679 NIPAL4,ADAM19
SE_02_078100120 chr5:157474068-157576174 Sample_02_0781 Lymphoma Pfeiffer_DMSO 120 37 2868 369 59 398 2675 NIPAL4,ADAM19
SE_02_074700257 chr5:157475100-157573987 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 257 38 2765 353 55 374 2346 ADAM19,NIPAL4
SE_02_032100157 chr5:157477590-157613600 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 157 19 3787 503 71 432 2491 ADAM19,SOX30,NIPAL4
SE_02_012200355 chr5:157477612-157506339 Sample_02_0122 Haematopoietic and lymphoid tissue TOLEDO 355 4 761 97 17 100 1687 ADAM19,NIPAL4
SE_00_005600046 chr5:157477820-157603534 Sample_00_0056 Sigmoid colon sigmoid colon 3y 46 85 3493 465 67 394 2449 ADAM19,SOX30,NIPAL4
SE_02_075000455 chr5:157478125-157505973 Sample_02_0750 Lymphoma Rec-1_GSI 455 8 735 93 16 99 1611 ADAM19,NIPAL4
SE_02_086300072 chr5:157478511-157576950 Sample_02_0863 Malignant rhaboid tumor TTC1240_empty 72 32 2766 361 57 381 2351 ADAM19,NIPAL4
SE_02_078800056 chr5:157478990-157576504 Sample_02_0788 Brain 3565 56 35 2748 357 57 380 2282 ADAM19,NIPAL4
SE_02_061100351 chr5:157479184-157564357 Sample_02_0611 Liposarcoma DDLPS_T1 351 38 2381 310 47 316 1941 ADAM19,NIPAL4
SE_02_115600103 chr5:157479530-157521709 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 103 19 1163 156 27 160 1724 ADAM19,NIPAL4
SE_02_115700041 chr5:157479885-157554523 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 41 44 2076 272 42 263 1801 ADAM19,NIPAL4
SE_02_038700111 chr5:157480493-157525916 Sample_02_0387 Lymph node CD19+_B_cells_nhl_FL1-2 111 16 1245 159 27 166 1558 ADAM19,NIPAL4
SE_02_011900153 chr5:157480515-157511161 Sample_02_0119 Haematopoietic and lymphoid tissue PFEIFFER 153 19 834 114 19 111 1356 ADAM19,NIPAL4
SE_02_121800469 chr5:157480567-157509911 Sample_02_1218 Bone marrow Daudi 469 15 792 106 18 111 1346 ADAM19,NIPAL4
SE_01_006700246 chr5:157480585-157511977 Sample_01_0067 Peritoneal effusion: derived from metastatic site: peritoneal cavity SUDHL6 246 3 851 115 20 115 1344 ADAM19,NIPAL4
SE_01_005500496 chr5:157480701-157510371 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 496 5 800 110 19 111 1320 ADAM19,NIPAL4
SE_02_075100504 chr5:157480747-157505857 Sample_02_0751 Lymphoma Rec-1_WO 504 9 670 84 14 89 1147 ADAM19,NIPAL4
SE_01_009600111 chr5:157481022-157511325 Sample_01_0096 B-cell lymphoma DOHH2 111 5 824 114 20 109 1260 ADAM19,NIPAL4
SE_00_000500378 chr5:157483776-157489781 Sample_00_0005 Blood B-cell 378 1 169 20 5 17 191 ADAM19,NIPAL4
SE_02_007800105 chr5:157484337-157499772 Sample_02_0078 Neuroblastoma low-MYCN-Neuroblastoma-patient-cells 105 6 418 51 10 68 757 ADAM19,NIPAL4
SE_02_081701008 chr5:157484452-157512582 Sample_02_0817 Ovary Epithelial ovarian cancer 1008 9 760 108 20 107 1084 ADAM19,NIPAL4
SE_02_061200417 chr5:157484559-157555113 Sample_02_0612 Liposarcoma DDLPS_T2 417 23 1970 263 41 259 1416 ADAM19,NIPAL4
SE_02_028800446 chr5:157485332-157510880 Sample_02_0288 Tonsil CB5_H3K27Ac 446 2 701 102 18 102 1084 ADAM19,NIPAL4
SE_00_005500359 chr5:157485466-157572065 Sample_00_0055 Spleen spleen 34y 359 28 2445 326 52 339 1534 ADAM19,NIPAL4
SE_02_110400122 chr5:157485674-157576230 Sample_02_1104 Brain NB-69 122 46 2575 342 55 362 1738 ADAM19,NIPAL4
SE_02_086200089 chr5:157487239-157576667 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 89 23 2548 341 54 363 1738 ADAM19,NIPAL4
SE_00_000500574 chr5:157496462-157508107 Sample_00_0005 Blood B-cell 574 1 296 41 5 52 459 ADAM19,NIPAL4
SE_02_086400073 chr5:157496596-157576365 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 73 24 2262 300 45 316 1181 ADAM19,NIPAL4
SE_02_053300188 chr5:157496671-157576507 Sample_02_0533 Blood vessel Circle of Willis_54y 188 31 2263 300 45 317 1181 ADAM19,NIPAL4
SE_02_085700193 chr5:157496696-157576323 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 193 24 2254 300 45 316 1180 ADAM19,NIPAL4
SE_02_101700490 chr5:157496725-157578644 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 490 19 2316 312 45 318 1177 ADAM19,NIPAL4
SE_02_049900150 chr5:157496868-157577880 Sample_02_0499 Fetal lung IMR90 IR Senescence 150 41 2290 310 45 318 1145 ADAM19,NIPAL4
SE_02_137400655 chr5:157497062-157564180 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 655 23 1885 253 35 238 774 ADAM19,NIPAL4
SE_02_059400159 chr5:157497560-157579072 Sample_02_0594 iPSC-derived neural progenitors 159 23 2308 312 45 303 1069 ADAM19,NIPAL4
SE_01_007300775 chr5:157497862-157572797 Sample_01_0073 Coronary artery coronary-artery 775 13 2115 284 42 278 865 ADAM19,NIPAL4
SE_02_091100126 chr5:157498073-157576256 Sample_02_0911 Heart left ventricle_DCM_LV1290 126 32 2225 299 45 299 1069 ADAM19,NIPAL4
SE_02_086600113 chr5:157499238-157576715 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 113 26 2219 298 45 298 1069 ADAM19,NIPAL4
SE_02_044300058 chr5:157499442-157576429 Sample_02_0443 Bone MG63 58 39 2203 294 45 297 1063 ADAM19,NIPAL4
SE_02_062900044 chr5:157500216-157565738 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 44 11 1862 244 37 246 705 ADAM19,NIPAL4
SE_02_063100098 chr5:157500421-157565138 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 98 15 1842 243 36 246 705 ADAM19,NIPAL4
SE_02_156000233 chr5:157500587-157576746 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 233 19 2178 291 45 294 971 ADAM19,NIPAL4
SE_02_026500080 chr5:157500797-157577154 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 80 9 2179 291 45 295 971 ADAM19,NIPAL4
SE_01_008500304 chr5:157501388-157576848 Sample_01_0085 Stomach stomach 304 13 2158 287 44 294 971 ADAM19,NIPAL4
SE_02_155900441 chr5:157501436-157571379 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 441 13 1992 265 41 269 767 ADAM19,NIPAL4
SE_02_044500390 chr5:157501758-157583324 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 390 26 2339 315 45 295 971 ADAM19,NIPAL4
SE_02_081600288 chr5:157501839-157576458 Sample_02_0816 Ovary Clear cell ovarian cancer 288 29 2136 282 44 294 971 ADAM19,NIPAL4
SE_02_154200303 chr5:157502117-157542520 Sample_02_1542 Gastrointestinal Stromal GIST-T1 303 11 1147 155 26 158 649 ADAM19,NIPAL4
SE_02_155500134 chr5:157502387-157572135 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 134 13 1996 266 41 269 767 ADAM19,NIPAL4
SE_02_155300603 chr5:157502400-157573918 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 603 21 2043 271 42 270 767 ADAM19,NIPAL4
SE_01_011500028 chr5:157502661-157575768 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 28 25 2103 280 44 286 865 ADAM19,NIPAL4
SE_02_139200038 chr5:157502755-157613924 Sample_02_1392 Peripheral blood Mac-2A_ALK- 38 35 3140 425 58 343 958 ADAM19,SOX30,NIPAL4
SE_02_074100505 chr5:157502854-157518098 Sample_02_0741 Muscle RH30 505 7 419 65 13 50 343 ADAM19,NIPAL4
SE_02_152500457 chr5:157503587-157517554 Sample_02_1525 Stomach N87 DMSO 457 5 391 61 12 46 292 ADAM19,NIPAL4
SE_02_090700130 chr5:157503757-157583655 Sample_02_0907 Heart left ventricle_DCM_LV1223 130 28 2313 315 45 292 886 ADAM19,NIPAL4
SE_02_076900131 chr5:157504115-157575747 Sample_02_0769 Ovary HEYA8 131 41 2071 278 43 284 782 ADAM19,NIPAL4
SE_02_036900746 chr5:157504906-157541854 Sample_02_0369 Skeletal muscle RD 746 8 1068 145 25 153 564 ADAM19,NIPAL4
SE_02_037900746 chr5:157504906-157541854 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 746 8 1068 145 25 153 564 ADAM19,NIPAL4
SE_01_006300026 chr5:157505009-157576481 Sample_01_0063 Skeletal muscle skeletal-muscle-myoblast 26 13 2063 271 43 289 886 ADAM19,NIPAL4
SE_02_041900943 chr5:157505105-157519355 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 943 10 410 61 13 51 351 ADAM19,NIPAL4
SE_02_087600384 chr5:157505145-157518020 Sample_02_0876 Muscle SMS-CTR_CASZ1b_Ctrl 384 8 348 52 12 44 292 ADAM19,NIPAL4
SE_02_127900163 chr5:157505164-157609671 Sample_02_1279 Bone Mesenchymal stem cells 163 34 2954 402 56 310 886 ADAM19,SOX30,NIPAL4
SE_02_137000474 chr5:157505446-157516885 Sample_02_1370 Pancreas Patu8902-untreated 474 5 308 45 9 44 292 ADAM19,NIPAL4
SE_02_108000870 chr5:157505515-157563001 Sample_02_1080 Muscle JR1 shCtrl 870 16 1631 217 29 216 560 ADAM19,NIPAL4
SE_02_137600288 chr5:157505563-157572058 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 288 35 1903 253 39 265 671 ADAM19,NIPAL4
SE_02_084000097 chr5:157505646-157572075 Sample_02_0840 Embryo hNPCs_R1159Q/+ 97 19 1899 253 39 264 649 ADAM19,NIPAL4
SE_02_130800077 chr5:157505766-157565200 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 77 9 1707 223 33 234 565 ADAM19,NIPAL4
SE_02_087700340 chr5:157505811-157518075 Sample_02_0877 Muscle SMS-CTR_CASZ1b_Dox 340 7 327 52 11 36 229 ADAM19,NIPAL4
SE_02_092400090 chr5:157505880-157583837 Sample_02_0924 Heart fetal heart_PCW10_12569 90 33 2243 303 43 282 808 ADAM19,NIPAL4
SE_02_044200282 chr5:157505895-157565203 Sample_02_0442 Bone MG63.3 282 41 1703 222 33 233 541 ADAM19,NIPAL4
SE_02_083101048 chr5:157506444-157569621 Sample_02_0831 Umblical vein HUVECs_TNF0min 1048 16 1823 238 35 244 533 ADAM19,NIPAL4
SE_02_011000110 chr5:157506645-157611820 Sample_02_0110 Ovaries IOE11 110 11 2977 399 53 309 799 ADAM19,SOX30,NIPAL4
SE_02_062000848 chr5:157506693-157522497 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 848 6 466 62 10 70 339 ADAM19,NIPAL4
SE_02_030100245 chr5:157506888-157577136 Sample_02_0301 Neuroblastoma GIMEN 245 10 2022 265 40 281 796 ADAM19,NIPAL4
SE_01_002900608 chr5:157506896-157524544 Sample_01_0029 Lung fibroblast-of-lung 608 6 511 65 10 72 335 ADAM19,NIPAL4
SE_01_007500306 chr5:157506964-157576553 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 306 13 2012 262 40 280 792 ADAM19,NIPAL4
SE_02_017200919 chr5:157507019-157576677 Sample_02_0172 Lung IMR-90_quiescent 919 15 2013 264 40 280 789 ADAM19,NIPAL4
SE_02_155200521 chr5:157507109-157564504 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 521 25 1653 216 31 216 486 ADAM19,NIPAL4
SE_02_092100222 chr5:157507123-157593129 Sample_02_0921 Heart embryonic heart_CS22 222 32 2441 332 44 279 767 ADAM19,NIPAL4
SE_02_089800247 chr5:157507168-157583545 Sample_02_0898 Heart left ventricle_LV1356 247 28 2208 295 41 271 754 ADAM19,NIPAL4
SE_02_089900855 chr5:157507357-157572103 Sample_02_0899 Heart left ventricle_LV1400 855 16 1853 244 37 243 518 ADAM19,NIPAL4
SE_02_090100328 chr5:157507608-157574097 Sample_02_0901 Heart left ventricle_LV1471 328 28 1901 248 38 243 518 ADAM19,NIPAL4
SE_02_108200198 chr5:157509158-157576228 Sample_02_1082 Retina retina 198 25 1937 255 40 264 715 ADAM19,NIPAL4
SE_01_007800277 chr5:157509179-157576991 Sample_01_0078 Heart left ventricle heart-left-ventricle 277 11 1954 258 40 266 710 ADAM19,NIPAL4
SE_02_090800413 chr5:157509581-157576483 Sample_02_0908 Heart left ventricle_DCM_LV1262 413 23 1929 251 39 261 659 ADAM19,NIPAL4
SE_02_138000386 chr5:157509654-157573880 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 386 34 1839 240 37 237 450 ADAM19,NIPAL4
Genomic distribution of SEs associated with NIPAL4
Genome Browser

The strength of the tissue affected by the gene

Expression of NIPAL4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)