SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000132603
Gene: NIP7 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:69337996-69343106 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103501915 chr16:69221575-69298872 Sample_02_1035 Mammary gland HCC70_Vehicle 1915 19 1829 171 0 67 229 SNTB2,NIP7,VPS4A,COG8,PDF
SE_02_032701023 chr16:69314021-69331430 Sample_02_0327 Liver hepatocytes_d6 1023 3 651 55 2 78 1518 VPS4A,COG8,PDF,TMED6,NIP7
SE_02_032600701 chr16:69314032-69331449 Sample_02_0326 Liver hepatocytes_d3 701 4 651 55 2 78 1518 VPS4A,COG8,PDF,TMED6,NIP7
SE_02_032501060 chr16:69314064-69331226 Sample_02_0325 Liver hepatocytes_d1 1060 3 644 55 2 78 1508 VPS4A,COG8,PDF,TMED6,NIP7
SE_02_104301965 chr16:69314535-69333439 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1965 8 702 58 2 81 1564 VPS4A,COG8,PDF,NIP7,TMED6
SE_02_098901679 chr16:69317873-69332007 Sample_02_0989 Kidney kidney cortex_WT 1679 5 542 42 1 68 1390 VPS4A,COG8,PDF,NIP7,TMED6
SE_02_106900376 chr16:69355017-69396742 Sample_02_1069 Bone marrow Bone marrow aspirate 376 8 1048 72 0 98 893 TERF2,NIP7,TMED6,CYB5B,PDF,VPS4A,COG8
SE_02_088500756 chr16:69355292-69375873 Sample_02_0885 Blood NALM6_2 756 4 530 35 0 41 610 TERF2,NIP7,TMED6,CYB5B,PDF,VPS4A,COG8
SE_02_057300409 chr16:69355503-69396838 Sample_02_0573 Blood Nalm6_1 409 11 1039 72 0 99 884 TERF2,NIP7,TMED6,CYB5B,PDF,VPS4A,COG8
SE_02_138300020 chr16:69359907-69482836 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 20 76 3054 303 3 275 1496 CYB5B,TERF2,NIP7,TMED6,PDF,VPS4A,COG8
SE_02_121800872 chr16:69363490-69396586 Sample_02_1218 Bone marrow Daudi 872 11 827 57 0 79 590 TERF2,TMED6,CYB5B,PDF,NIP7,COG8
SE_02_082600606 chr16:69363653-69411150 Sample_02_0826 Stomach gastric tumor 606 19 1171 92 0 153 590 TERF2,TMED6,CYB5B,PDF,NIP7,COG8
SE_02_138100019 chr16:69365558-69482854 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 19 83 2894 290 3 272 1438 CYB5B,TERF2,TMED6,PDF,NIP7,COG8
SE_02_138200025 chr16:69367908-69496170 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 25 68 3202 304 3 271 1336 CYB5B,TERF2,TMED6,PDF,NIP7,COG8
SE_02_028800510 chr16:69368976-69386636 Sample_02_0288 Tonsil CB5_H3K27Ac 510 3 407 20 0 52 426 TERF2,TMED6,CYB5B,PDF,COG8,NIP7
SE_02_023700246 chr16:69373300-69449176 Sample_02_0237 Colon V389 246 16 1860 189 0 162 568 CYB5B,TERF2,TMED6,PDF,COG8,NIP7
SE_02_149200133 chr16:69373397-69478374 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 133 29 2575 268 3 239 1131 CYB5B,TERF2,TMED6,PDF,NIP7,COG8
SE_02_087500195 chr16:69380910-69478411 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 195 27 2413 262 3 238 1131 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_098900155 chr16:69381229-69531338 Sample_02_0989 Kidney kidney cortex_WT 155 39 3896 391 11 338 1131 CYB5B,TERF2,TMED6,NIP7,COG8,MIR1538,NFAT5,PDF
SE_02_008700035 chr16:69382274-69504190 Sample_02_0087 Pancreas MiaPaca2 35 1 3117 300 3 274 1131 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_144500060 chr16:69382438-69491809 Sample_02_1445 Adipose SW872_TAZ4SA 60 31 2751 282 3 256 1131 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_042400114 chr16:69383100-69427665 Sample_02_0424 Colon SW620 114 4 1114 102 0 136 406 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_030100955 chr16:69383303-69418941 Sample_02_0301 Neuroblastoma GIMEN 955 8 902 77 0 126 283 TERF2,TMED6,NIP7,CYB5B,COG8
SE_02_144700240 chr16:69383617-69426674 Sample_02_1447 Adipose SW872_CAMTA1 240 11 1075 96 0 136 406 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_041000032 chr16:69383633-69449831 Sample_02_0410 Brain BT16_NoDox 32 8 1643 180 0 161 617 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_008400076 chr16:69383641-69428186 Sample_02_0084 Oral cavity KB_5Z-7-oxozeaenol 76 5 1120 104 0 136 406 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_105300043 chr16:69383690-69503949 Sample_02_1053 Esophagus OACM5.1 43 57 3077 298 3 272 1131 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_031600118 chr16:69383700-69427282 Sample_02_0316 Neuroblastoma CHP212 118 7 1092 98 0 136 406 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_008500172 chr16:69383735-69420421 Sample_02_0085 Oral cavity KB_IL-1alpha_5Z-7-oxozeaenol 172 7 921 79 0 126 283 TERF2,TMED6,NIP7,CYB5B,COG8
SE_02_032200083 chr16:69383817-69426394 Sample_02_0322 Colon Caco-2 83 4 1061 94 0 136 406 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_040700028 chr16:69383854-69449453 Sample_02_0407 Brain BT16 28 9 1630 179 0 159 591 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_042700092 chr16:69383926-69427769 Sample_02_0427 Colon HCT116_shPAF1 92 5 1095 101 0 136 406 CYB5B,TERF2,TMED6,NIP7,COG8
SE_01_011400013 chr16:69387421-69482895 Sample_01_0114 Colon HCT116_encode 13 54 2374 262 3 204 848 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_103200501 chr16:69387676-69420487 Sample_02_1032 Head and neck SCC1 JQ1 501 16 825 75 0 85 0 TERF2,TMED6,CYB5B,NIP7,COG8
SE_02_102900100 chr16:69387733-69445134 Sample_02_1029 Colon HCT116 100 25 1447 167 0 107 123 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_087300044 chr16:69387793-69427181 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 44 14 983 92 0 95 123 CYB5B,TERF2,TMED6,NIP7,COG8
SE_02_072300051 chr16:69388026-69496260 Sample_02_0723 Pancreas MIAPaca2 WT 51 44 2726 276 3 218 848 CYB5B,TERF2,TMED6,NIP7,COG8,VPS4A,PDF
Genomic distribution of SEs associated with NIP7
Genome Browser

The strength of the tissue affected by the gene

Expression of NIP7

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)