SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_042700092
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Colon
Biosample name: HCT116_shPAF1
Genomic region: chr16:69383926-69427769
Size: 43843
Super-enhancer rank 92
Number of SE elements: 5
ChIP density(Case|Control): 140608.8853|3858.184
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CYB5B ;
ROSE Overlap CYB5B ; TERF2 ;
ROSE Proximal TMED6 ; NIP7 ; COG8 ;
ROSE Closest CYB5B ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TMED6 ; NIP7 ; CYB5B ; PDF ; VPS4A ; COG8 ; TERF2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_042700092 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers