SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000178057
Gene: NDUFAF3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr3:49020459-49023495 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103600902 chr3:48921378-48995878 Sample_02_1036 Mammary gland HCC70_XY018 902 26 1616 88 3 154 1740 ARIH2,P4HTM,NDUFAF3,DALRD3,SLC25A20,IMPDH2,WDR6,MIR191,ARIH2OS,MIR425
SE_02_021100516 chr3:48944433-48992079 Sample_02_0211 Lung MRC-5_NFD_1DPT 516 7 1036 55 3 131 1454 P4HTM,ARIH2,NDUFAF3,SLC25A20,MIR425,DALRD3,IMPDH2,WDR6,C3ORF71,MIR191
SE_02_108200313 chr3:48972277-49014437 Sample_02_1082 Retina retina 313 14 902 39 1 237 2824 ARIH2,WDR6,P4HTM,NDUFAF3,DALRD3,IMPDH2,MIR191,MIR425
SE_02_120501065 chr3:48977831-49013437 Sample_02_1205 Brain NB3 1065 7 742 32 0 194 2515 ARIH2,WDR6,P4HTM,NDUFAF3,DALRD3,IMPDH2,MIR191,MIR425
SE_02_104801309 chr3:48983781-49003776 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1309 6 409 18 0 55 1020 ARIH2,P4HTM,NDUFAF3,DALRD3,IMPDH2,WDR6,MIR191,MIR425
SE_02_111100598 chr3:48986077-49013004 Sample_02_1111 Other HGrC1_SMAD2/3KO 598 10 569 23 0 142 1758 WDR6,P4HTM,NDUFAF3,DALRD3,IMPDH2,MIR191,MIR425
SE_02_077500648 chr3:48987137-49011248 Sample_02_0775 Pancreas EndoC-BH1_SE 648 10 499 22 0 101 1450 WDR6,P4HTM,NDUFAF3,DALRD3,IMPDH2,MIR191,MIR425
SE_02_093700442 chr3:48988907-49007921 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 442 4 396 15 0 101 1449 WDR6,P4HTM,NDUFAF3,DALRD3,IMPDH2,MIR191,MIR425
SE_02_027500373 chr3:48996293-49009011 Sample_02_0275 Retina FW14 373 2 278 11 0 78 1136 P4HTM,WDR6,DALRD3,MIR425,NDUFAF3,IMPDH2,MIR191
SE_02_004700990 chr3:48996566-49008978 Sample_02_0047 Pancreatic endoderm IIDP/donor790 990 1 271 11 0 78 1136 P4HTM,WDR6,DALRD3,MIR425,NDUFAF3,IMPDH2,MIR191
SE_02_104901633 chr3:49011772-49018890 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1633 1 198 10 0 129 1360 DALRD3,WDR6,NDUFAF3,IMPDH2,P4HTM,MIR191,MIR425
SE_02_076500161 chr3:49014609-49030125 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 161 1 386 14 1 238 2464 QRICH1,NDUFAF3,IMPDH2,MIR191,DALRD3,WDR6,MIR425,P4HTM
SE_02_153000998 chr3:49014816-49026548 Sample_02_1530 Peripheral blood neutrophils_0BA0X 998 1 278 12 0 182 1915 NDUFAF3,IMPDH2,MIR191,DALRD3,WDR6,MIR425,P4HTM
SE_02_111200566 chr3:49015270-49024925 Sample_02_1112 T lymphocyte THP-6 T-ALL 566 1 241 11 0 131 1647 NDUFAF3,IMPDH2,MIR191,DALRD3,WDR6,MIR425,P4HTM
SE_02_103000344 chr3:49015704-49024268 Sample_02_1030 Colon DKO 344 1 212 10 0 120 1465 NDUFAF3,MIR191,DALRD3,WDR6,MIR425,IMPDH2,P4HTM
SE_02_065900550 chr3:49015921-49023574 Sample_02_0659 Lung H23 550 1 184 8 0 118 1389 NDUFAF3,MIR191,DALRD3,WDR6,MIR425,IMPDH2,P4HTM
SE_02_085200425 chr3:49016251-49024479 Sample_02_0852 Mammary gland MCF7L-P 425 1 201 9 0 116 1406 NDUFAF3,IMPDH2,MIR191,DALRD3,MIR425,P4HTM,WDR6
SE_02_115900427 chr3:49016251-49024479 Sample_02_1159 Mammary gland MCF7 427 1 201 9 0 116 1406 NDUFAF3,IMPDH2,MIR191,DALRD3,MIR425,P4HTM,WDR6
SE_02_109000432 chr3:49016265-49023212 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 432 1 168 8 0 113 1297 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_149201181 chr3:49016534-49023765 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 1181 1 178 8 0 114 1308 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_102900461 chr3:49016536-49023975 Sample_02_1029 Colon HCT116 461 1 182 9 0 114 1306 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_058400624 chr3:49016596-49021515 Sample_02_0584 Lung H1299 WT 624 1 121 8 0 70 848 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6,LAMB2,ARIH2OS
SE_02_108600424 chr3:49016670-49023091 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 424 1 156 8 0 107 1203 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_125800467 chr3:49016717-49024958 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 467 1 199 9 0 115 1406 NDUFAF3,IMPDH2,MIR191,DALRD3,MIR425,P4HTM,WDR6
SE_02_078000662 chr3:49016757-49024993 Sample_02_0780 Liver SMMC-7721 662 1 200 9 0 115 1401 NDUFAF3,IMPDH2,MIR191,DALRD3,MIR425,P4HTM,WDR6
SE_02_088400577 chr3:49016802-49023808 Sample_02_0884 Colon LoVo 577 1 170 8 0 109 1251 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_109300581 chr3:49016818-49023306 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 581 1 158 8 0 109 1198 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_152901065 chr3:49016859-49024333 Sample_02_1529 Peripheral blood neutrophils_0BC75 1065 1 182 9 0 109 1273 NDUFAF3,IMPDH2,MIR191,DALRD3,MIR425,P4HTM,WDR6
SE_02_087501207 chr3:49017029-49023743 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 1207 1 165 8 0 109 1212 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_134000807 chr3:49017113-49023558 Sample_02_1340 Blood acute myeloid leukemia 807 1 156 8 0 109 1174 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_146000392 chr3:49017119-49022943 Sample_02_1460 Blood Mutz-3 392 1 143 8 0 98 1089 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_01_011400299 chr3:49017137-49023438 Sample_01_0114 Colon HCT116_encode 299 1 154 8 0 109 1161 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_057700129 chr3:49017138-49023717 Sample_02_0577 Blood MOLM13_empty 129 1 160 8 0 109 1192 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_057500161 chr3:49017148-49023689 Sample_02_0575 Blood MOLM13_sgLKB1e2 161 1 158 7 0 109 1190 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_057400168 chr3:49017150-49024021 Sample_02_0574 Blood MOLM-13_sgNeg2 168 1 167 8 0 109 1188 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_061700313 chr3:49017155-49024100 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 313 1 168 8 0 109 1185 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_136500280 chr3:49017159-49023280 Sample_02_1365 Pancreas AsPC1-untreated 280 1 149 7 0 109 1135 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_074801057 chr3:49017195-49023141 Sample_02_0748 Mammary gland HCC1599_WO 1057 1 144 7 0 107 1105 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_073900565 chr3:49017195-49024325 Sample_02_0739 Blood Nalm6 565 1 174 8 0 109 1204 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_058200146 chr3:49017209-49023742 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 146 1 158 7 0 109 1172 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_103400321 chr3:49017259-49023165 Sample_02_1034 Blood AML cell 321 1 139 5 0 107 1103 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_076000604 chr3:49017264-49023731 Sample_02_0760 Ovary BIN-67_SMARCA4 604 1 154 5 0 109 1164 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_058100110 chr3:49017273-49023880 Sample_02_0581 Blood MOLM13_empty_HG 110 1 155 5 0 109 1162 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_133200394 chr3:49017322-49024067 Sample_02_1332 Blood Monomac6_CTRL 394 1 161 6 0 107 1158 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_050100268 chr3:49017348-49023214 Sample_02_0501 Blood HL-60_CTRL 268 1 138 5 0 105 1095 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_047700761 chr3:49017372-49023168 Sample_02_0477 Colon intestinal epithelial organoids_139a 761 1 138 5 0 105 1084 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_045900444 chr3:49017388-49023271 Sample_02_0459 Blood ME-1_DMSO_6h 444 1 141 5 0 105 1093 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_138200600 chr3:49017390-49023140 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 600 1 137 5 0 105 1075 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_047800583 chr3:49017401-49023405 Sample_02_0478 Colon normal colon mucosa 583 1 143 5 0 107 1105 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_143100693 chr3:49017414-49023673 Sample_02_1431 Blood T cell 693 1 148 5 0 107 1137 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_057800150 chr3:49017433-49023626 Sample_02_0578 Blood MOLM-13_sgSIK3e4 150 1 148 5 0 107 1121 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_099500602 chr3:49017444-49021530 Sample_02_0995 Blood MOLM-13_empty vector 602 1 97 5 0 62 684 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_147000777 chr3:49017446-49023104 Sample_02_1470 Umbilical Vein H441 777 1 134 5 0 103 1057 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_046000548 chr3:49017447-49023189 Sample_02_0460 Blood ME-1_I-10-49_6h 548 1 136 5 0 104 1070 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_099400360 chr3:49017456-49023418 Sample_02_0994 Blood MOLM13_SIK3TQ 360 1 142 5 0 106 1098 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_125000489 chr3:49017494-49023571 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 489 1 144 5 0 104 1105 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_099300604 chr3:49017498-49021548 Sample_02_0993 Blood MOLM-13_empty 604 1 96 5 0 61 681 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_055500724 chr3:49017509-49023161 Sample_02_0555 Other HAP1_WT 724 1 133 5 0 102 1061 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_106900331 chr3:49017524-49022932 Sample_02_1069 Bone marrow Bone marrow aspirate 331 1 129 5 0 93 1016 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_110500993 chr3:49017555-49023303 Sample_02_1105 Brain NBL-S 993 1 135 5 0 104 1073 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_109500407 chr3:49017559-49023400 Sample_02_1095 Blood CD34 Erythroid cells_Don002 407 1 138 5 0 104 1088 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_109800606 chr3:49017563-49023192 Sample_02_1098 Blood THP1_DMSO_noPMA 606 1 132 5 0 102 1061 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_01_010900524 chr3:49017565-49023112 Sample_01_0109 Colon transverse colon_54y 524 1 131 5 0 101 1047 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_068200231 chr3:49017569-49023585 Sample_02_0682 Blood Kasumi-1 231 1 142 5 0 104 1099 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_081900567 chr3:49017596-49023305 Sample_02_0819 Ovary Mucinous ovarian cancer 567 1 132 5 0 104 1059 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_133100707 chr3:49017613-49023179 Sample_02_1331 Blood Molm13_CTRL 707 1 129 5 0 102 1040 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_081700813 chr3:49017638-49023254 Sample_02_0817 Ovary Epithelial ovarian cancer 813 1 131 5 0 102 1047 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_046501189 chr3:49017648-49023193 Sample_02_0465 Adipose subcutaneous adipocytes 1189 1 129 5 0 102 1038 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_046100158 chr3:49017720-49023517 Sample_02_0461 Blood MV-4-11-B cells 158 1 135 5 0 104 1057 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_083500813 chr3:49017721-49023372 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 813 1 134 5 0 104 1047 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_125400963 chr3:49017770-49022754 Sample_02_1254 Bladder Bladder tumor Basal1 963 1 118 5 0 92 920 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_102800203 chr3:49017798-49023156 Sample_02_1028 Blood HL-60_WT 203 1 125 5 0 102 1006 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_121500416 chr3:49017816-49023154 Sample_02_1215 Blood Jurkat ZBTB1 KO_Asparagine deprivation 416 1 124 5 0 102 999 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_01_009900345 chr3:49017825-49023073 Sample_01_0099 Colon transverse colon 345 1 123 5 0 99 983 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_083600907 chr3:49017857-49023520 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 907 1 131 5 0 104 1031 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_083300922 chr3:49017858-49023354 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 922 1 129 5 0 104 1020 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_121600266 chr3:49017923-49023476 Sample_02_1216 Blood Jurkat ZBTB1 KO 266 1 130 5 0 104 1018 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_121700402 chr3:49017968-49023696 Sample_02_1217 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1_Asparagine deprivation 402 1 135 5 0 104 1032 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_121400294 chr3:49017978-49023369 Sample_02_1214 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1 294 1 128 5 0 104 994 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_058001100 chr3:49017984-49023091 Sample_02_0580 Blood HEL_sgSIK3e4 1100 1 120 5 0 101 953 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_135000795 chr3:49018163-49023421 Sample_02_1350 Leukophereses leukophereses_p456 795 1 127 5 0 102 958 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
SE_02_134100425 chr3:49018220-49024191 Sample_02_1341 Blood MV411 425 1 145 6 0 102 984 NDUFAF3,MIR191,DALRD3,MIR425,IMPDH2,P4HTM,WDR6
Genomic distribution of SEs associated with NDUFAF3
Genome Browser

The strength of the tissue affected by the gene

Expression of NDUFAF3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)