SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074801057
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr3:49017195-49023141
Size: 5946
Super-enhancer rank 1057
Number of SE elements: 1
ChIP density(Case|Control): 32001.372|1067.9016
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIR425 ;
ROSE Overlap NDUFAF3 ; MIR191 ; DALRD3 ; MIR425 ;
ROSE Proximal DALRD3 ; IMPDH2 ; P4HTM ; WDR6 ; NDUFAF3 ;
ROSE Closest MIR425 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA NDUFAF3 ; DALRD3 ; P4HTM ; QARS ; MIR425 ; MIR6890 ; MIR191 ; QRICH1 ; IMPDH2 ; WDR6 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074801057 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers