SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000198736
Gene: MSRB1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr16:1938229-1943293 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_066300415 chr16:1889194-1932378 Sample_02_0663 Thyroid TT 415 12 1546 235 3 91 479 HS3ST6,MEIOB,SNHG9,TBL3,RPL3L,LINC00254,RNF151,RPS2,NDUFB10,SNORA64,MSRB1,SNORA10,NOXO1,SNORA78
SE_02_087300365 chr16:1903715-1933653 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 365 8 1102 137 2 72 479 HS3ST6,MEIOB,SNHG9,TBL3,RPL3L,LINC00254,RNF151,RPS2,NDUFB10,SNORA64,MSRB1,SNORA10,NOXO1,SNORA78
SE_02_103602727 chr16:1929285-1930283 Sample_02_1036 Mammary gland HCC70_XY018 2727 1 33 7 0 0 0 SNORA10,HS3ST6,SNHG9,RPL3L,LINC00254,RNF151,RPS2,NDUFB10,SNORA64,MSRB1,TBL3,SNORA78
SE_04_000200825 chr16:1957925-1966900 Sample_04_0002 Blood cold shocked K562 825 1 429 73 1 65 1029 SNHG9,RPS2,RNF151,NDUFB10,SNORA78,SNORA64,SNORA10,HS3ST6,GFER,RPL3L,SYNGR3,MSRB1,TBL3,NOXO1,ZNF598
SE_02_076500614 chr16:1957999-1966849 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 614 1 423 73 1 62 1019 SNHG9,RPS2,NDUFB10,SNORA78,SNORA64,SNORA10,HS3ST6,GFER,RPL3L,SYNGR3,RNF151,MSRB1,TBL3,NOXO1,ZNF598
SE_02_132200596 chr16:1959299-1966126 Sample_02_1322 Connective Tissue HT1080_WT 596 1 358 62 1 59 988 SNHG9,RPS2,NDUFB10,SNORA78,SNORA64,SNORA10,HS3ST6,GFER,RPL3L,SYNGR3,RNF151,MSRB1,TBL3,NOXO1,ZNF598
SE_02_111400040 chr16:1959490-1966265 Sample_02_1114 Embryonic kidney HEK293 40 1 356 62 1 59 943 SNHG9,RPS2,NDUFB10,SNORA78,SNORA64,SNORA10,HS3ST6,GFER,RPL3L,SYNGR3,RNF151,MSRB1,TBL3,NOXO1,ZNF598
SE_02_085200464 chr16:1961702-1967910 Sample_02_0852 Mammary gland MCF7L-P 464 1 301 46 0 62 963 SNHG9,RPS2,RNF151,NDUFB10,SNORA78,SNORA64,SNORA10,HS3ST6,GFER,RPL3L,SYNGR3,MSRB1,TBL3,NOXO1,ZNF598
SE_02_115900466 chr16:1961702-1967910 Sample_02_1159 Mammary gland MCF7 466 1 301 46 0 62 963 SNHG9,RPS2,RNF151,NDUFB10,SNORA78,SNORA64,SNORA10,HS3ST6,GFER,RPL3L,SYNGR3,MSRB1,TBL3,NOXO1,ZNF598
SE_02_140400083 chr16:1961883-1966243 Sample_02_1404 Embryonic kidney HEK293_siBAHD1_WT 83 1 228 40 0 50 661 SNHG9,RPS2,NDUFB10,SNORA78,SNORA64,SNORA10,HS3ST6,GFER,RPL3L,SYNGR3,RNF151,MSRB1,TBL3,NOXO1,ZNF598
SE_02_140500090 chr16:1962142-1966219 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 90 1 212 38 0 47 620 SNHG9,RPS2,SNORA78,SNORA64,SNORA10,HS3ST6,GFER,RPL3L,SYNGR3,RNF151,NDUFB10,MSRB1,TBL3,NOXO1,ZNF598
SE_02_146001460 chr16:1962182-1966180 Sample_02_1460 Blood Mutz-3 1460 1 210 37 0 47 615 SNHG9,RPS2,SNORA78,SNORA64,SNORA10,HS3ST6,GFER,RPL3L,SYNGR3,RNF151,NDUFB10,MSRB1,TBL3,NOXO1,ZNF598
SE_01_011200277 chr16:1962192-1965763 Sample_01_0112 Embryonic kidney HEK293_encode 277 1 194 35 0 47 615 SNHG9,RPS2,SNORA78,SNORA64,SNORA10,HS3ST6,GFER,RPL3L,SYNGR3,RNF151,NDUFB10,MSRB1,TBL3,NOXO1,ZNF598
SE_02_102900521 chr16:1970584-1982480 Sample_02_1029 Colon HCT116 521 1 483 60 0 88 2050 NOXO1,TBL3,SNORA10,SLC9A3R2,SNHG9,GFER,RPL3L,SYNGR3,RNF151,RPS2,SNORA78,NDUFB10,SNORA64,MSRB1,NPW,ZNF598
SE_02_076500483 chr16:1975886-1986771 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 483 1 407 62 2 70 1969 GFER,TBL3,NOXO1,SNORA10,SLC9A3R2,SNHG9,RPL3L,SYNGR3,SNORA78,RNF151,RPS2,NPW,NDUFB10,SNORA64,MSRB1,ZNF598
SE_02_103601818 chr16:1977753-1980658 Sample_02_1036 Mammary gland HCC70_XY018 1818 1 132 12 0 26 743 NOXO1,TBL3,SNORA10,SLC9A3R2,SNHG9,GFER,RPL3L,SYNGR3,RNF151,RPS2,SNORA78,NDUFB10,SNORA64,MSRB1,NPW,ZNF598
SE_02_103502133 chr16:1977904-1980500 Sample_02_1035 Mammary gland HCC70_Vehicle 2133 1 117 12 0 22 678 NOXO1,TBL3,SNORA10,SLC9A3R2,SNHG9,GFER,RPL3L,SYNGR3,RNF151,RPS2,SNORA78,NDUFB10,SNORA64,MSRB1,NPW,ZNF598
SE_02_105100431 chr16:1978395-1985443 Sample_02_1051 Esophagus Eso26 431 1 240 40 0 26 1142 GFER,TBL3,NOXO1,SNORA10,SLC9A3R2,SNHG9,RPL3L,SYNGR3,SNORA78,RNF151,RPS2,NPW,NDUFB10,SNORA64,MSRB1,ZNF598
SE_02_047700853 chr16:1978598-1986294 Sample_02_0477 Colon intestinal epithelial organoids_139a 853 1 269 46 1 31 1214 GFER,TBL3,NOXO1,SNORA10,SLC9A3R2,SNHG9,RPL3L,SYNGR3,SNORA78,RNF151,RPS2,NPW,NDUFB10,SNORA64,MSRB1,ZNF598
SE_01_009900806 chr16:1979421-1985705 Sample_01_0099 Colon transverse colon 806 1 202 33 0 22 856 GFER,NOXO1,SNORA10,SLC9A3R2,SNHG9,RPL3L,SYNGR3,SNORA78,RNF151,RPS2,NPW,NDUFB10,SNORA64,MSRB1,TBL3,ZNF598
SE_02_114500790 chr16:1986076-2007799 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 790 5 849 104 1 181 2709 ZNF598,GFER,SYNGR3,SNORA10,SLC9A3R2,SNHG9,RPL3L,SNORA64,TSC2,RNF151,NTHL1,NPW,NDUFB10,RPS2,MSRB1,SNORA78,TBL3,NOXO1
SE_02_123500521 chr16:1988837-2009796 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 521 7 802 90 0 198 2438 ZNF598,SYNGR3,SNORA10,SLC9A3R2,SNHG9,GFER,RPL3L,SNORA64,TSC2,RNF151,NTHL1,NPW,NDUFB10,RPS2,MSRB1,SNORA78,TBL3,NOXO1
SE_02_122700933 chr16:1989310-2009828 Sample_02_1227 Bone marrow U266 933 4 789 88 0 199 2448 ZNF598,SYNGR3,SNORA10,SLC9A3R2,SNHG9,GFER,RPL3L,SNORA64,TSC2,RNF151,NTHL1,NPW,NDUFB10,RPS2,MSRB1,SNORA78,TBL3,NOXO1
SE_02_103601468 chr16:1991728-1993961 Sample_02_1036 Mammary gland HCC70_XY018 1468 1 67 5 0 40 556 SYNGR3,SNORA10,SLC9A3R2,SNHG9,GFER,RPL3L,SNORA78,RNF151,RPS2,NPW,NDUFB10,SNORA64,MSRB1,TBL3,NOXO1,ZNF598
SE_02_103501951 chr16:1991765-1993982 Sample_02_1035 Mammary gland HCC70_Vehicle 1951 1 68 5 0 40 563 SYNGR3,SNORA10,SLC9A3R2,SNHG9,GFER,RPL3L,SNORA78,RNF151,RPS2,NPW,NDUFB10,SNORA64,MSRB1,TBL3,NOXO1,ZNF598
SE_02_104801564 chr16:1991794-2007788 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1564 6 669 71 0 143 2074 ZNF598,SYNGR3,SNORA10,SLC9A3R2,SNHG9,GFER,RPL3L,SNORA64,TSC2,RNF151,NTHL1,NPW,NDUFB10,RPS2,MSRB1,SNORA78,TBL3,NOXO1
Genomic distribution of SEs associated with MSRB1
Genome Browser

The strength of the tissue affected by the gene

Expression of MSRB1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)