SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000265596
Gene: MIR3659 Gene type: miRNA
Strand: + External links:
Genomic region: chr1:38089231-38089329 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_006900336 chr1:37994897-38039730 Sample_01_0069 Adrenal gland adrenal-gland 336 7 1166 44 2 477 1248 UTP11L,FHL3,SF3A3,MIR3659,INPP5B,POU3F1
SE_02_119100235 chr1:37994986-38045236 Sample_02_1191 Brain GBM25 235 9 1294 50 2 561 1562 UTP11L,FHL3,POU3F1,INPP5B,SF3A3,MIR3659
SE_02_117400205 chr1:37995104-38039409 Sample_02_1174 Brain GBM02 205 12 1152 44 2 459 1248 UTP11L,FHL3,INPP5B,SF3A3,POU3F1,MIR3659
SE_02_118500326 chr1:37995307-38045181 Sample_02_1185 Brain GBM14 326 9 1289 50 2 560 1547 UTP11L,FHL3,POU3F1,INPP5B,SF3A3,MIR3659
SE_02_127901424 chr1:37995611-38039519 Sample_02_1279 Bone Mesenchymal stem cells 1424 11 1145 44 2 470 1248 UTP11L,FHL3,INPP5B,SF3A3,POU3F1,MIR3659
SE_02_118300320 chr1:37995705-38045257 Sample_02_1183 Brain GBM12 320 12 1281 48 2 558 1568 UTP11L,FHL3,POU3F1,INPP5B,SF3A3,MIR3659
SE_02_119400231 chr1:37995711-38045131 Sample_02_1194 Brain GBM28 231 15 1279 48 2 558 1537 UTP11L,FHL3,POU3F1,INPP5B,SF3A3,MIR3659
SE_02_096300667 chr1:37995728-38039451 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 667 8 1140 42 2 459 1248 UTP11L,FHL3,INPP5B,SF3A3,POU3F1,MIR3659
SE_02_120000433 chr1:37995755-38039503 Sample_02_1200 Brain GBM36 433 7 1138 42 2 467 1248 UTP11L,FHL3,INPP5B,SF3A3,POU3F1,MIR3659
SE_02_119700536 chr1:37995757-38039373 Sample_02_1197 Brain GBM33 536 8 1137 42 2 453 1248 UTP11L,FHL3,INPP5B,SF3A3,POU3F1,MIR3659
SE_02_119600401 chr1:37995757-38044565 Sample_02_1196 Brain GBM32 401 8 1268 48 2 523 1408 UTP11L,FHL3,POU3F1,INPP5B,SF3A3,MIR3659
SE_02_095300591 chr1:37995818-38045589 Sample_02_0953 Brain H3.3K27M_1840 591 13 1278 48 2 567 1651 UTP11L,FHL3,POU3F1,INPP5B,SF3A3,MIR3659
SE_02_113800427 chr1:37998635-38039454 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 427 9 1050 38 2 413 856 UTP11L,FHL3,MIR3659,SF3A3,POU3F1
SE_02_047900483 chr1:37998671-38044537 Sample_02_0479 Head and neck SCC25 483 13 1179 44 2 477 1005 UTP11L,FHL3,POU3F1,MIR3659,SF3A3
SE_02_158401211 chr1:37999141-38039636 Sample_02_1584 Brain U87 GBM_Mock 1211 5 1033 38 2 421 812 UTP11L,FHL3,MIR3659,SF3A3,POU3F1
SE_02_148100023 chr1:38014486-38077086 Sample_02_1481 Bone MIC 23 17 1524 64 2 664 1189 UTP11L,POU3F1,MIR3659,SF3A3,FHL3
SE_02_147800103 chr1:38014785-38074430 Sample_02_1478 Bone EW-3 103 19 1447 60 2 632 1189 UTP11L,POU3F1,MIR3659,SF3A3,FHL3
SE_02_147900252 chr1:38015015-38072024 Sample_02_1479 Bone EW-7 252 21 1389 57 2 632 1189 UTP11L,POU3F1,MIR3659,SF3A3,FHL3
SE_02_018400165 chr1:38015622-38046725 Sample_02_0184 Skin SKMEL30 165 6 735 24 1 495 1103 UTP11L,POU3F1,MIR3659,SF3A3,FHL3
SE_02_018500245 chr1:38015730-38046210 Sample_02_0185 Skin UACC257 245 5 727 24 1 442 941 UTP11L,POU3F1,MIR3659,SF3A3,FHL3
SE_02_147400018 chr1:38015963-38075588 Sample_02_1474 Bone CHLA-10 18 14 1438 61 2 635 1189 UTP11L,POU3F1,MIR3659,SF3A3,FHL3
SE_01_005400128 chr1:38022579-38064555 Sample_01_0054 Haematopoietic and lymphoid tissue OCI-LY3 128 5 1003 40 1 553 966 UTP11L,POU3F1,MIR3659,SF3A3,FHL3
SE_02_070100054 chr1:38023312-38074152 Sample_02_0701 Bone David_TC32 54 27 1224 52 1 547 933 UTP11L,POU3F1,MIR3659,SF3A3,FHL3
SE_02_006300184 chr1:38024573-38074932 Sample_02_0063 Skin Keratinocytes 184 7 1212 51 1 548 806 UTP11L,POU3F1,MIR3659,SF3A3,FHL3
SE_02_148700041 chr1:38024959-38068304 Sample_02_1487 Bone TC-32 41 17 1042 41 1 535 764 POU3F1,MIR3659,SF3A3,UTP11L,FHL3
SE_02_021600193 chr1:38024993-38071553 Sample_02_0216 Skin NHEK_scramble 193 13 1123 46 1 543 761 POU3F1,MIR3659,SF3A3,FHL3,UTP11L
SE_02_148900268 chr1:38025007-38044785 Sample_02_1489 Bone TC-106 268 8 490 15 0 275 194 POU3F1,MIR3659,SF3A3,UTP11L,FHL3
SE_01_008800797 chr1:38026105-38046130 Sample_01_0088 Tibial nerve tibial-nerve 797 1 471 14 0 344 495 POU3F1,MIR3659,SF3A3,FHL3,UTP11L
SE_02_104601553 chr1:38027043-38071209 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1553 18 1058 45 1 533 759 POU3F1,MIR3659,SF3A3,UTP11L,FHL3
SE_02_096200370 chr1:38027063-38068715 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 370 8 996 41 1 533 759 POU3F1,MIR3659,SF3A3,UTP11L,FHL3
SE_02_138400670 chr1:38027236-38050955 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 670 6 525 20 0 456 759 POU3F1,MIR3659,SF3A3,UTP11L,FHL3
SE_02_097000398 chr1:38027412-38073727 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 398 14 1100 48 1 535 759 POU3F1,MIR3659,SF3A3,UTP11L,FHL3
SE_02_068100231 chr1:38029734-38046710 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 231 5 370 14 0 344 664 POU3F1,MIR3659,SF3A3,UTP11L,FHL3
SE_02_028400396 chr1:38036755-38054235 Sample_02_0284 Pelvis patient 119 396 1 383 21 0 330 759 POU3F1,MIR3659,SF3A3,FHL3,UTP11L
SE_02_148500810 chr1:38037694-38046058 Sample_02_1485 Bone SK-ES-1 810 1 190 8 0 165 479 POU3F1,MIR3659,SF3A3,UTP11L,FHL3
SE_02_128001348 chr1:38038156-38046712 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 1348 1 189 7 0 240 665 POU3F1,MIR3659,SF3A3,UTP11L,FHL3
SE_02_143201579 chr1:38042033-38048185 Sample_02_1432 Bone A673 STAG2 WT 1579 1 104 2 0 209 759 POU3F1,MIR3659,UTP11L,FHL3
SE_02_143301700 chr1:38043061-38048073 Sample_02_1433 Bone A673 STAG2 null 1700 1 81 2 0 209 759 POU3F1,MIR3659,UTP11L,FHL3
SE_02_106000745 chr1:38047405-38054226 Sample_02_1060 Bone TC71_SA2 KO 745 1 151 12 0 38 0 MIR3659,POU3F1,UTP11L,FHL3
SE_02_147500873 chr1:38056336-38062622 Sample_02_1475 Bone CHLA-25 873 1 171 4 1 19 0 MIR3659,POU3F1,UTP11L
SE_02_128000661 chr1:38056793-38062642 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 661 1 164 3 0 19 0 MIR3659,POU3F1,UTP11L
SE_02_148000710 chr1:38056808-38062640 Sample_02_1480 Bone MHH-ES-1 710 1 163 3 0 19 0 MIR3659,POU3F1,UTP11L
SE_02_148500622 chr1:38056862-38062632 Sample_02_1485 Bone SK-ES-1 622 1 159 3 0 19 0 MIR3659,POU3F1,UTP11L
SE_02_148900219 chr1:38058680-38072415 Sample_02_1489 Bone TC-106 219 9 364 16 0 31 0 MIR3659,POU3F1,UTP11L
SE_02_147700213 chr1:38058818-38073980 Sample_02_1477 Bone EW-22 213 7 389 18 0 30 0 MIR3659,POU3F1,UTP11L
SE_02_147500355 chr1:38062792-38077153 Sample_02_1475 Bone CHLA-25 355 1 351 18 0 44 0 MIR3659,POU3F1
SE_02_128000748 chr1:38062801-38070185 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 748 1 186 7 0 9 0 MIR3659,POU3F1
SE_02_148000919 chr1:38062831-38069196 Sample_02_1480 Bone MHH-ES-1 919 1 165 6 0 9 0 MIR3659,POU3F1
SE_02_148500379 chr1:38062889-38074396 Sample_02_1485 Bone SK-ES-1 379 1 282 14 0 12 0 MIR3659,POU3F1
SE_02_106000573 chr1:38062894-38071465 Sample_02_1060 Bone TC71_SA2 KO 573 1 214 10 0 9 0 MIR3659,POU3F1
SE_02_006300337 chr1:38113663-38139759 Sample_02_0063 Skin Keratinocytes 337 4 725 18 1 175 0 MIR3659
SE_02_010500743 chr1:38113763-38139581 Sample_02_0105 Skin neonatal_keratinocytes 743 4 711 18 1 175 0 MIR3659
SE_02_039602090 chr1:38113957-38139692 Sample_02_0396 Skin NHEK-D 2090 7 715 18 1 174 0 MIR3659,POU3F1
SE_02_021600671 chr1:38114120-38140553 Sample_02_0216 Skin NHEK_scramble 671 5 745 18 1 187 0 MIR3659,POU3F1
SE_02_036900323 chr1:38118241-38155843 Sample_02_0369 Skeletal muscle RD 323 3 1115 17 2 207 0 MIR3659
SE_02_037900323 chr1:38118241-38155843 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 323 3 1115 17 2 207 0 MIR3659
Genomic distribution of SEs associated with MIR3659
Genome Browser

The strength of the tissue affected by the gene

Expression of MIR3659

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)