SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000254211
Gene: LINC01485 Gene type: lncRNA
Strand: - External links:
Genomic region: chr5:173778527-173809039 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_099900273 chr5:173680042-173745280 Sample_02_0999 Lymphoma OCI-LY1_966 273 30 2170 89 16 98 0 LINC01484,LINC01485
SE_02_122700118 chr5:173680086-173750893 Sample_02_1227 Bone marrow U266 118 22 2348 92 17 102 0 LINC01484,LINC01485
SE_02_099800091 chr5:173680929-173783713 Sample_02_0998 Lymphoma OCI-LY1_DMSO 91 52 3355 137 21 184 0 LINC01484,LINC01485
SE_02_115200251 chr5:173681018-173747317 Sample_02_1152 Lymphoma RL_WT_gRNA1 251 10 2197 88 17 102 0 LINC01484,LINC01485
SE_02_130200376 chr5:173686009-173746878 Sample_02_1302 Lymphoma RL DMSO 376 14 2020 84 17 102 0 LINC01484,LINC01485
SE_02_130300178 chr5:173686419-173761123 Sample_02_1303 Lymphoma RL_tazemetostat 178 26 2471 91 19 124 0 LINC01484,LINC01485
SE_02_115300213 chr5:173686580-173749102 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 213 13 2062 85 17 102 0 LINC01484,LINC01485
SE_02_115400160 chr5:173686856-173751628 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 160 13 2146 86 17 102 0 LINC01484,LINC01485
SE_02_077500198 chr5:173687168-173784017 Sample_02_0775 Pancreas EndoC-BH1_SE 198 28 3155 133 21 184 0 LINC01484,LINC01485
SE_02_110600372 chr5:173688214-173783036 Sample_02_1106 Brain NGP 372 51 3107 132 21 184 0 LINC01484,LINC01485
SE_02_110700210 chr5:173688265-173783696 Sample_02_1107 Brain SK-N-AS 210 41 3115 132 21 184 0 LINC01484,LINC01485
SE_02_047100108 chr5:173688487-173782729 Sample_02_0471 Brain Kelly DMSO 108 39 3088 130 21 184 0 LINC01484,LINC01485
SE_02_150000081 chr5:173688666-173782751 Sample_02_1500 Brain KELLY_untreat 81 29 3090 130 21 184 0 LINC01484,LINC01485
SE_02_110500280 chr5:173689567-173786379 Sample_02_1105 Brain NBL-S 280 54 3158 139 21 186 0 LINC01484,LINC01485
SE_02_054400152 chr5:173689741-173786731 Sample_02_0544 Brain Kelly_ResVeh 152 40 3170 140 21 186 0 LINC01484,LINC01485
SE_02_121800367 chr5:173706446-173750992 Sample_02_1218 Bone marrow Daudi 367 17 1509 69 14 63 0 LINC01484,LINC01485
SE_02_078300618 chr5:173732878-173752563 Sample_02_0783 Blood MEC2 618 5 682 23 3 30 0 LINC01484,LINC01485
SE_02_081700643 chr5:173733134-173765046 Sample_02_0817 Ovary Epithelial ovarian cancer 643 11 1080 28 5 57 0 LINC01484,LINC01485
SE_02_115600303 chr5:173733150-173751864 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 303 10 652 22 3 28 0 LINC01484,LINC01485
SE_02_115700221 chr5:173733161-173764932 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 221 15 1076 28 5 54 0 LINC01484,LINC01485
SE_02_078200889 chr5:173733266-173765656 Sample_02_0782 Blood MEC1 889 9 1093 28 5 56 0 LINC01484,LINC01485
SE_02_122100286 chr5:173733268-173750634 Sample_02_1221 Bone marrow KMS11 286 8 609 22 3 23 0 LINC01484,LINC01485
SE_02_122000356 chr5:173733826-173751000 Sample_02_1220 Bone marrow JJN3 356 7 591 21 2 23 0 LINC01484,LINC01485
SE_02_121900565 chr5:173736418-173750789 Sample_02_1219 Bone marrow H929 565 6 447 13 2 15 0 LINC01484,LINC01485
SE_02_122300429 chr5:173736564-173747236 Sample_02_1223 Bone marrow KMS28BM 429 4 324 10 2 13 0 LINC01484,LINC01485
SE_02_155100167 chr5:173737356-173784787 Sample_02_1551 Gastrointestinal Stromal MaMel 167 12 1479 62 6 95 0 LINC01484,LINC01485
SE_02_055901000 chr5:173744188-173772019 Sample_02_0559 iPSCs FX52 iPSCs dC-T 1000 4 850 15 4 57 0 LINC01484,LINC01485
SE_02_108000859 chr5:173752787-173766524 Sample_02_1080 Muscle JR1 shCtrl 859 4 459 6 2 31 0 LINC01484,LINC01485
SE_02_088901312 chr5:173752863-173782737 Sample_02_0889 Heart left ventricle_LV1183 1312 8 950 44 4 79 0 LINC01484,LINC01485,CPEB4
SE_02_089201229 chr5:173752877-173783107 Sample_02_0892 Heart left ventricle_LV1215 1229 8 962 45 4 79 0 LINC01484,LINC01485,CPEB4
SE_02_089300913 chr5:173753014-173782805 Sample_02_0893 Heart left ventricle_LV1226 913 5 948 44 4 79 0 LINC01484,LINC01485
SE_02_090201149 chr5:173753091-173782864 Sample_02_0902 Heart left ventricle_LV1558 1149 8 947 45 4 79 0 LINC01484,LINC01485,CPEB4
SE_02_089101253 chr5:173753095-173782638 Sample_02_0891 Heart left ventricle_LV1202 1253 10 940 44 4 79 0 LINC01484,LINC01485
SE_02_089801335 chr5:173753153-173783143 Sample_02_0898 Heart left ventricle_LV1356 1335 6 954 45 4 79 0 LINC01484,LINC01485,CPEB4
SE_02_088801185 chr5:173753190-173782857 Sample_02_0888 Heart left ventricle_LV1160 1185 8 945 44 4 79 0 LINC01484,LINC01485,CPEB4
SE_01_010600240 chr5:173753207-173783051 Sample_01_0106 Adrenal gland adrenal gland 54y 240 9 948 45 4 79 0 LINC01484,LINC01485
SE_02_058800514 chr5:173753219-173767995 Sample_02_0588 Cervix HeLa Kyoto_untreated 514 8 493 7 3 38 0 LINC01484,LINC01485
SE_00_005200997 chr5:173753304-173782638 Sample_00_0052 Heart left ventricle 3y 997 10 932 44 4 79 0 LINC01484,LINC01485
SE_02_120500867 chr5:173756646-173784886 Sample_02_1205 Brain NB3 867 12 881 47 2 74 0 LINC01484,LINC01485
SE_02_117500548 chr5:173757861-173783731 Sample_02_1175 Brain GBM03 548 15 803 42 2 66 0 LINC01484,LINC01485
SE_02_047600543 chr5:173760099-173782665 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 543 10 709 41 2 60 0 LINC01484,LINC01485
SE_02_118200528 chr5:173763340-173782973 Sample_02_1182 Brain GBM11 528 9 627 42 2 57 0 LINC01484,LINC01485
SE_02_123300527 chr5:173763808-173783222 Sample_02_1233 Lung PC9_miR-4497 mimic 527 4 612 41 2 57 0 LINC01484,LINC01485
SE_02_123200538 chr5:173763861-173782906 Sample_02_1232 Lung PC9_siMED13L-2 538 6 600 41 2 57 0 LINC01484,LINC01485
SE_02_078500157 chr5:173764175-173782588 Sample_02_0785 Brain 2097 157 8 576 40 2 57 0 LINC01484,LINC01485
SE_02_142300432 chr5:173764595-173786643 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 432 4 676 51 2 59 0 LINC01484,LINC01485
SE_02_153100526 chr5:173772363-173783808 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 526 2 375 36 1 31 0 LINC01484,LINC01485,CPEB4
SE_04_000200029 chr5:173800218-173920382 Sample_04_0002 Blood cold shocked K562 29 19 3293 254 14 430 491 CPEB4,LINC01485
SE_02_093700097 chr5:173802465-173836907 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 97 6 1081 56 1 71 0 LINC01485
SE_02_093500388 chr5:173802494-173836013 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 388 14 1055 55 1 71 0 LINC01485,CPEB4
SE_02_047600795 chr5:173802812-173839400 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 795 10 1129 61 1 78 0 LINC01485,CPEB4
SE_02_115500406 chr5:173811688-173835356 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 406 3 711 32 1 69 0 LINC01485
SE_02_115200451 chr5:173812043-173834474 Sample_02_1152 Lymphoma RL_WT_gRNA1 451 4 663 29 1 60 0 LINC01485
SE_02_115300343 chr5:173812117-173834488 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 343 2 663 29 1 60 0 LINC01485
SE_02_099900630 chr5:173812347-173832975 Sample_02_0999 Lymphoma OCI-LY1_966 630 14 618 25 1 50 0 LINC01485
SE_02_115400252 chr5:173812465-173834459 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 252 1 656 29 1 60 0 LINC01485
SE_02_121800748 chr5:173812753-173830786 Sample_02_1218 Bone marrow Daudi 748 12 523 24 1 50 0 LINC01485
SE_02_122900092 chr5:173814214-173925243 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 92 56 2924 239 14 447 491 CPEB4,LINC01485
SE_02_098900662 chr5:173815546-173834438 Sample_02_0989 Kidney kidney cortex_WT 662 6 562 27 1 57 0 LINC01485
SE_02_074900569 chr5:173815670-173827462 Sample_02_0749 Mammary gland HCC1599_GSI 569 4 345 16 1 46 0 LINC01485
SE_02_115700554 chr5:173815771-173832798 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 554 13 507 21 1 46 0 LINC01485
SE_02_075000992 chr5:173817553-173833005 Sample_02_0750 Lymphoma Rec-1_GSI 992 9 458 17 1 40 0 LINC01485
SE_02_122100638 chr5:173820350-173841140 Sample_02_1221 Bone marrow KMS11 638 6 598 35 1 62 0 LINC01485,CPEB4
SE_02_109900037 chr5:173820868-173898945 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 37 40 2107 182 10 356 465 CPEB4,LINC01485
SE_02_098700044 chr5:173820938-173896601 Sample_02_0987 Blood K562_Control_1 44 25 2063 179 10 356 465 CPEB4,LINC01485
SE_02_113000043 chr5:173821464-173896930 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 43 17 2059 179 10 356 465 CPEB4,LINC01485
SE_02_098800015 chr5:173821538-173892854 Sample_02_0988 Blood K562_EPZ 15 23 1987 177 9 348 437 CPEB4,LINC01485
SE_02_103300141 chr5:173821637-173919033 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 141 21 2556 217 13 407 491 CPEB4,LINC01485
SE_02_111100172 chr5:173822570-173893684 Sample_02_1111 Other HGrC1_SMAD2/3KO 172 23 1963 175 8 349 465 CPEB4,LINC01485
SE_02_146700009 chr5:173823332-173973726 Sample_02_1467 Blood HUDEP-2_LRFKO 9 31 3778 322 23 741 1278 CPEB4,LINC01485,C5ORF47
SE_02_074500945 chr5:173823747-173862846 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 945 9 1157 115 2 94 0 CPEB4,LINC01485
SE_02_146800002 chr5:173824467-173973875 Sample_02_1468 Blood HUDEP-2_WT 2 26 3742 319 23 728 1309 CPEB4,LINC01485,C5ORF47
SE_02_054500107 chr5:173831238-173896988 Sample_02_0545 Bone marrow K562 WT 107 17 1780 164 9 325 465 CPEB4,LINC01485
SE_02_101800074 chr5:173831466-173864860 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 74 8 1007 111 2 68 0 CPEB4,LINC01485
SE_02_111600113 chr5:173831499-173900527 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 113 15 1847 172 9 326 465 CPEB4,LINC01485
SE_02_109600036 chr5:173838427-173895930 Sample_02_1096 Blood CD34 Erythroid cells_Don003 36 9 1544 149 9 302 465 CPEB4,LINC01485
SE_02_082200748 chr5:173838613-173862236 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 748 5 716 89 2 42 0 CPEB4,LINC01485
SE_02_136300034 chr5:173838646-173891543 Sample_02_1363 Blood Hudep2 34 10 1456 147 8 280 437 CPEB4,LINC01485
SE_02_074400278 chr5:173839459-173862906 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 278 8 719 89 2 35 0 CPEB4,LINC01485
SE_02_109500069 chr5:173839614-173896202 Sample_02_1095 Blood CD34 Erythroid cells_Don002 69 12 1514 146 9 297 465 CPEB4,LINC01485
Genomic distribution of SEs associated with LINC01485
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC01485

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)