SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000258673
Gene: LINC01397 Gene type: lncRNA
Strand: + External links:
Genomic region: chr1:110082688-110109719 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_076600049 chr1:109947863-110066417 Sample_02_0766 Ovary PEO1 49 39 2890 162 3 522 3549 ALX3,AHCYL1,STRIP1,CSF1,UBL4B,LINC01397
SE_02_103600336 chr1:109948944-110052724 Sample_02_1036 Mammary gland HCC70_XY018 336 26 2493 130 3 427 2790 STRIP1,AHCYL1,CSF1,ALX3,LINC01397
SE_02_104701730 chr1:110018437-110064850 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1730 15 1203 64 0 256 2550 ALX3,AHCYL1,STRIP1,UBL4B,LINC01397
SE_02_088601007 chr1:110034706-110059878 Sample_02_0886 Skin foreskin_ p63KLF4 1007 8 688 36 0 153 1579 STRIP1,AHCYL1,ALX3,LINC01397
SE_02_114500624 chr1:110039708-110066205 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 624 19 745 49 0 161 1796 STRIP1,ALX3,UBL4B,AHCYL1,LINC01397
SE_02_124600028 chr1:110047622-110066529 Sample_02_1246 Brain LAN5_ATRA 28 1 530 35 0 120 1210 STRIP1,ALX3,UBL4B,AHCYL1,LINC01397
SE_02_110400306 chr1:110048165-110067224 Sample_02_1104 Brain NB-69 306 7 517 35 0 120 1146 STRIP1,ALX3,UBL4B,AHCYL1,LINC01397
SE_02_106300459 chr1:110048543-110063917 Sample_02_1063 Brain CLB-GA-control 459 6 420 22 0 118 977 STRIP1,ALX3,UBL4B,AHCYL1,LINC01397
SE_01_011100540 chr1:110048602-110063415 Sample_01_0111 Brain SK-N-SH 540 5 400 20 0 117 977 STRIP1,ALX3,UBL4B,AHCYL1,LINC01397
SE_02_150000531 chr1:110048749-110064159 Sample_02_1500 Brain KELLY_untreat 531 8 419 25 0 117 977 STRIP1,ALX3,UBL4B,AHCYL1,LINC01397
SE_02_110700454 chr1:110048844-110068257 Sample_02_1107 Brain SK-N-AS 454 5 519 34 0 118 1146 STRIP1,ALX3,UBL4B,AHCYL1,LINC01397
SE_02_106400679 chr1:110049134-110064163 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 679 7 405 24 0 116 932 STRIP1,ALX3,UBL4B,AHCYL1,LINC01397
SE_02_123900379 chr1:110055670-110079821 Sample_02_1239 Skin Waga_virus_positive 379 6 626 66 1 106 747 ALX3,STRIP1,LINC01397,UBL4B
SE_02_129500121 chr1:110130834-110136883 Sample_02_1295 Lung JHU-LX48-SCLC PDX 121 7 177 9 1 0 0 SLC6A17,LINC01397,UBL4B
Genomic distribution of SEs associated with LINC01397
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC01397

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)