SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000229723
Gene: LINC01054 Gene type: lncRNA
Strand: - External links:
Genomic region: chr13:114329559-114333948 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_111200426 chr13:114260836-114299725 Sample_02_1112 T lymphocyte THP-6 T-ALL 426 11 1308 207 0 48 711 CDC16,MIR4502,UPF3A,MIR548AR,CHAMP1,LINC01054
SE_02_127901471 chr13:114262943-114293920 Sample_02_1279 Bone Mesenchymal stem cells 1471 7 994 167 0 45 599 CDC16,MIR4502,UPF3A,MIR548AR,CHAMP1,LINC01054
SE_02_074500526 chr13:114278719-114284261 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 526 2 186 40 0 14 347 UPF3A,MIR4502,CDC16,MIR548AR,CHAMP1,LINC01054
SE_02_133200417 chr13:114279173-114296360 Sample_02_1332 Blood Monomac6_CTRL 417 5 642 88 0 25 469 UPF3A,MIR4502,CDC16,MIR548AR,CHAMP1,LINC01054
SE_02_101701381 chr13:114279285-114297929 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1381 5 693 97 0 25 469 UPF3A,MIR4502,CDC16,MIR548AR,CHAMP1,LINC01054
SE_02_126500995 chr13:114279904-114288619 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 995 3 294 42 0 18 425 UPF3A,MIR4502,CDC16,MIR548AR,CHAMP1,LINC01054
SE_02_147500826 chr13:114309846-114328686 Sample_02_1475 Bone CHLA-25 826 4 549 68 3 38 604 CHAMP1,LINC01054,MIR4502,UPF3A
SE_02_077502267 chr13:114353327-114354444 Sample_02_0775 Pancreas EndoC-BH1_SE 2267 2 0 1 0 0 0 LINC01054,CHAMP1
SE_02_058800770 chr13:114354067-114354383 Sample_02_0588 Cervix HeLa Kyoto_untreated 770 1 0 0 0 0 0 LINC01054,CHAMP1
Genomic distribution of SEs associated with LINC01054
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC01054

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)