SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000146666
Gene: LINC00525 Gene type: lncRNA
Strand: + External links:
Genomic region: chr7:47761476-47766772 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_130300052 chr7:47599921-47726844 Sample_02_1303 Lymphoma RL_tazemetostat 52 41 4239 246 6 141 661 C7ORF65,LINC01447,TNS3,LINC00525
SE_02_076200950 chr7:47633910-47734862 Sample_02_0762 Podocyte podocyte_CTL 950 15 3463 209 6 101 661 C7ORF65,LINC01447,LINC00525
SE_02_130200341 chr7:47666003-47721059 Sample_02_1302 Lymphoma RL DMSO 341 19 1872 147 4 57 0 LINC01447,C7ORF65,LINC00525
SE_02_115500068 chr7:47666767-47734963 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 68 13 2351 159 5 68 0 LINC01447,C7ORF65,LINC00525
SE_02_115200049 chr7:47666856-47725847 Sample_02_1152 Lymphoma RL_WT_gRNA1 49 12 2027 153 4 59 0 LINC01447,C7ORF65,LINC00525
SE_02_115400117 chr7:47667506-47725538 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 117 10 1999 152 4 59 0 LINC01447,C7ORF65,LINC00525
SE_02_115300476 chr7:47701027-47721721 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 476 4 704 56 2 17 0 C7ORF65,LINC00525
SE_02_099800164 chr7:47701095-47734832 Sample_02_0998 Lymphoma OCI-LY1_DMSO 164 20 1180 69 4 28 0 C7ORF65,LINC00525
SE_02_099900279 chr7:47701122-47726939 Sample_02_0999 Lymphoma OCI-LY1_966 279 18 893 62 3 24 0 C7ORF65,LINC00525
SE_01_009600441 chr7:47701637-47721219 Sample_01_0096 B-cell lymphoma DOHH2 441 6 661 52 2 17 0 C7ORF65,LINC00525
SE_02_130400744 chr7:47704802-47717864 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 744 1 456 24 1 11 0 C7ORF65,LINC00525
SE_02_150700510 chr7:47708825-47725750 Sample_02_1507 Brain SHEP-21N_DOX_24h 510 7 599 18 3 18 0 LINC00525
SE_02_104602520 chr7:47709495-47759000 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2520 13 1715 71 11 42 0 C7ORF69,LINC00525,C7ORF65
SE_02_106300154 chr7:47709533-47744552 Sample_02_1063 Brain CLB-GA-control 154 14 1246 39 8 39 0 LINC00525
SE_02_106400193 chr7:47709533-47744556 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 193 9 1247 40 8 39 0 LINC00525
SE_02_114200333 chr7:47722007-47744618 Sample_02_1142 Peripheral nerve MPNST642_PRC2 mutant 333 6 827 29 6 23 0 LINC00525
SE_02_150100943 chr7:47766897-47773370 Sample_02_1501 Brain SHEP-21N_NOSPIKE 943 1 210 13 2 0 6 C7ORF69,LINC00525
SE_02_074800375 chr7:47770749-47788902 Sample_02_0748 Mammary gland HCC1599_WO 375 4 494 23 2 32 67 PKD1L1,C7ORF69,LINC00525
SE_02_074900447 chr7:47770766-47788853 Sample_02_0749 Mammary gland HCC1599_GSI 447 4 490 23 2 32 67 PKD1L1,C7ORF69,LINC00525,LINC01447
SE_02_156901246 chr7:47771262-47787995 Sample_02_1569 Endothelial Endothelial cells 1246 2 461 22 2 32 67 PKD1L1,C7ORF69,LINC00525
SE_02_132801034 chr7:47771711-47793876 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 1034 8 621 24 2 37 116 PKD1L1,C7ORF69,LINC00525
SE_02_093001550 chr7:47776756-47787971 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1550 15 305 18 0 26 0 PKD1L1,C7ORF69,LINC00525
SE_02_074100864 chr7:47776836-47788095 Sample_02_0741 Muscle RH30 864 4 303 18 0 26 0 PKD1L1,C7ORF69,LINC00525
SE_04_000300300 chr7:47777326-47788080 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 300 3 291 17 0 26 0 PKD1L1,C7ORF69,LINC00525
SE_02_065201307 chr7:47777605-47788002 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1307 6 281 16 0 26 0 PKD1L1,C7ORF69,LINC00525
SE_02_059401039 chr7:47777662-47792250 Sample_02_0594 iPSC-derived neural progenitors 1039 5 411 17 1 26 0 PKD1L1,C7ORF69,LINC00525
SE_02_052200344 chr7:47777701-47788074 Sample_02_0522 Colon SW620 344 5 281 16 0 26 0 PKD1L1,C7ORF69,LINC00525
SE_02_072701118 chr7:47777809-47788138 Sample_02_0727 Fetal lung IMR90_Etoposide 1118 2 280 16 0 26 0 PKD1L1,C7ORF69,LINC00525
SE_02_064701407 chr7:47777826-47788029 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1407 4 276 16 0 26 0 PKD1L1,C7ORF69,LINC00525
SE_02_079300148 chr7:47777880-47788068 Sample_02_0793 Brain MES20 148 2 275 16 0 26 0 PKD1L1,C7ORF69,LINC00525
SE_02_103700617 chr7:47777972-47791960 Sample_02_1037 Pharynx FaDu Control 617 3 398 17 1 26 0 PKD1L1,C7ORF69,LINC00525
SE_02_061900555 chr7:47778014-47790147 Sample_02_0619 Head and Neck HPV+ HNSCC_SCC-047 555 2 339 16 1 26 0 PKD1L1,C7ORF69,LINC00525
SE_02_105400748 chr7:47778019-47788153 Sample_02_1054 Esophagus SKGT4 748 2 278 16 0 26 0 PKD1L1,C7ORF69,LINC00525
SE_02_135900491 chr7:47778082-47789050 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 491 3 297 16 0 26 0 PKD1L1,C7ORF69,LINC00525
SE_02_150100154 chr7:47778571-47786687 Sample_02_1501 Brain SHEP-21N_NOSPIKE 154 1 218 13 0 15 0 PKD1L1,C7ORF69,LINC00525
SE_02_049200532 chr7:47778670-47792493 Sample_02_0492 Pharyng Detroit 562_LPS 532 5 390 15 1 27 2 PKD1L1,C7ORF69,LINC00525
SE_02_139800506 chr7:47779038-47801316 Sample_02_1398 Bone U2OS_siNC 506 13 634 20 1 50 243 C7ORF69,PKD1L1,LINC00525
SE_02_076700685 chr7:47779049-47792217 Sample_02_0767 Ovary OVCA429 685 12 375 15 1 24 0 PKD1L1,C7ORF69,LINC00525
SE_02_103800327 chr7:47779166-47789292 Sample_02_1038 Pharynx FaDu LPS 327 3 273 14 0 24 0 PKD1L1,C7ORF69,LINC00525
SE_02_144800163 chr7:47779663-47790053 Sample_02_1448 Adipose SW872_YAP5SA 163 4 294 12 1 23 0 PKD1L1,C7ORF69,LINC00525
SE_02_105700471 chr7:47781433-47789175 Sample_02_1057 Esophagus GihTRT 471 1 198 7 0 21 0 PKD1L1,C7ORF69,LINC00525
SE_02_099200586 chr7:47781468-47791739 Sample_02_0992 Mammary gland MDA-MB-231_Par 586 5 288 8 1 21 0 PKD1L1,C7ORF69,LINC00525
SE_02_154900783 chr7:47781490-47797650 Sample_02_1549 Gastrointestinal Stromal GIST-430B 783 5 452 10 1 37 144 C7ORF69,PKD1L1,LINC00525
SE_02_076901067 chr7:47781508-47792244 Sample_02_0769 Ovary HEYA8 1067 9 297 8 1 21 0 PKD1L1,C7ORF69,LINC00525
SE_02_088200245 chr7:47781569-47805280 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 245 5 668 17 1 57 296 C7ORF69,PKD1L1,LINC00525
SE_02_152600208 chr7:47781720-47789376 Sample_02_1526 Lung PC9 DMSO 208 3 192 7 0 21 0 PKD1L1,C7ORF69,LINC00525
SE_02_153800163 chr7:47781732-47789863 Sample_02_1538 Mammary gland MDA-MB-231 163 2 207 7 1 21 0 PKD1L1,C7ORF69,LINC00525
SE_02_049100893 chr7:47781771-47792524 Sample_02_0491 Pharyng Detroit 562-Control 893 3 291 7 1 22 3 PKD1L1,C7ORF69,LINC00525
SE_02_157100810 chr7:47781801-47787954 Sample_02_1571 Fibroblast Fibroblast cells 810 2 155 6 0 21 0 PKD1L1,C7ORF69,LINC00525
SE_02_136000802 chr7:47781875-47801292 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 802 2 540 12 1 47 243 C7ORF69,PKD1L1,LINC00525
SE_02_136200802 chr7:47781879-47802580 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 802 4 576 14 1 47 243 C7ORF69,PKD1L1,LINC00525
SE_02_116600621 chr7:47781980-47792110 Sample_02_1166 Biliary H69_TGF beta_16h_1 621 4 276 7 1 21 0 PKD1L1,C7ORF69,LINC00525
SE_02_061000848 chr7:47781984-47791963 Sample_02_0610 Liposarcoma MLS 1765-92 848 3 274 7 1 21 0 PKD1L1,C7ORF69,LINC00525
SE_02_087800269 chr7:47781993-47799674 Sample_02_0878 Ovary SVOG3e cells_noDox_control 269 5 486 9 1 37 144 C7ORF69,PKD1L1,LINC00525
SE_02_116900665 chr7:47782003-47790631 Sample_02_1169 Biliary H69_TGF beta_16h_2 665 4 237 7 1 21 0 PKD1L1,C7ORF69,LINC00525
SE_02_088300337 chr7:47782040-47805168 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 337 5 647 16 1 57 296 C7ORF69,PKD1L1,LINC00525
SE_02_136100965 chr7:47782066-47788172 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 965 1 152 6 0 21 0 PKD1L1,C7ORF69,LINC00525
SE_02_060200069 chr7:47782069-47789205 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 69 1 176 6 0 21 0 PKD1L1,C7ORF69,LINC00525
SE_02_113600280 chr7:47782144-47791047 Sample_02_1136 Bone U2OS-anaphase/telophase 280 5 241 6 1 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_126701615 chr7:47782146-47788143 Sample_02_1267 Bone Im-GCT-4072_G34W 1615 2 148 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_083901030 chr7:47782178-47787741 Sample_02_0839 Embryo hNPCs_K755R/+ 1030 1 136 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_135800480 chr7:47782198-47788299 Sample_02_1358 Other IC8-deltaEGF-L1596H_GSI_2h 480 1 149 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_123000417 chr7:47782237-47788225 Sample_02_1230 Lung PC9 417 2 148 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_053001054 chr7:47782260-47788618 Sample_02_0530 Mammary gland MCF10A 1054 5 154 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_094600242 chr7:47782267-47789296 Sample_02_0946 Tongue HN12 242 1 174 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_088000221 chr7:47782272-47805334 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 221 4 642 15 1 54 296 C7ORF69,PKD1L1,LINC00525
SE_02_093600463 chr7:47782274-47788194 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 463 1 147 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_060300151 chr7:47782280-47788616 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 151 1 154 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_123300478 chr7:47782294-47787815 Sample_02_1233 Lung PC9_miR-4497 mimic 478 2 136 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_111500471 chr7:47782306-47788132 Sample_02_1115 Liver HepG2 471 2 144 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_065900263 chr7:47782318-47819332 Sample_02_0659 Lung H23 263 11 1040 37 2 79 817 C7ORF69,PKD1L1,LINC00525
SE_02_111300399 chr7:47782334-47788207 Sample_02_1113 Bone U2OS 399 1 145 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_123100400 chr7:47782337-47788031 Sample_02_1231 Lung PC9_siMED13L-1 400 3 139 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_088100301 chr7:47782341-47802832 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 301 4 571 13 1 44 243 C7ORF69,PKD1L1,LINC00525
SE_02_093800698 chr7:47782346-47788103 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 698 2 139 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_087900304 chr7:47782357-47805359 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 304 5 640 15 1 54 296 C7ORF69,PKD1L1,LINC00525
SE_02_061500854 chr7:47782364-47788893 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 854 2 162 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_069800379 chr7:47782389-47792491 Sample_02_0698 Lung NCI-H1048-cas9_sgPOU2F3 379 3 273 6 1 19 2 PKD1L1,C7ORF69,LINC00525
SE_02_113400313 chr7:47782399-47788931 Sample_02_1134 Bone U2OS-interphase 313 4 160 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_135200566 chr7:47782404-47789644 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 566 1 177 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_123200349 chr7:47782406-47788071 Sample_02_1232 Lung PC9_siMED13L-2 349 3 137 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_049800562 chr7:47782406-47797814 Sample_02_0498 Fetal lung IMR90 Senescent_1 562 4 421 8 1 34 144 C7ORF69,PKD1L1,LINC00525
SE_02_137900980 chr7:47782410-47788090 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 980 4 137 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_059600372 chr7:47782419-47788422 Sample_02_0596 Mammary gland MCF10A_ DMSO 372 1 147 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_135700485 chr7:47782437-47788125 Sample_02_1357 Other IC8-deltaEGF-L1596H_GSI_0h 485 4 138 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_151500917 chr7:47782455-47789725 Sample_02_1515 Non-transformed mammary epithelial IMEC WT 917 3 181 5 1 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_135300787 chr7:47782506-47788759 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 787 1 150 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_144600082 chr7:47782527-47789298 Sample_02_1446 Adipose SW872_TAZ_CAMTA1 82 3 167 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_135400559 chr7:47782544-47790121 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 559 2 200 5 1 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_060100194 chr7:47782585-47788116 Sample_02_0601 Mammary gland MCF10A_p53shRNA_Nutlin3A 194 1 134 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_099100940 chr7:47782659-47790834 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 940 4 224 6 1 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_094200118 chr7:47782747-47788100 Sample_02_0942 Brain LN229 118 4 128 5 0 18 0 PKD1L1,C7ORF69,LINC00525
SE_02_046900326 chr7:47782841-47788010 Sample_02_0469 Kidney 786-O PBRM1 shRNA#2 326 8 128 5 0 17 0 PKD1L1,C7ORF69,LINC00525
SE_02_137300193 chr7:47782913-47788127 Sample_02_1373 Pancreas PANC1-untreated 193 4 128 5 0 17 0 PKD1L1,C7ORF69,LINC00525
SE_02_064502322 chr7:47783319-47787787 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 2322 2 113 5 0 17 0 PKD1L1,C7ORF69,LINC00525
SE_02_046800128 chr7:47783505-47787319 Sample_02_0468 Kidney 786-O PBRM1 shRNA#1 128 2 93 4 0 15 0 PKD1L1,C7ORF69,LINC00525
SE_02_132400239 chr7:47783656-47787981 Sample_02_1324 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M 239 5 110 5 0 15 0 PKD1L1,C7ORF69,LINC00525
SE_02_049700196 chr7:47784245-47798268 Sample_02_0497 Fetal lung IMR90_#1 196 6 393 7 1 31 144 C7ORF69,PKD1L1,LINC00525
SE_02_150300377 chr7:47786937-47800928 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 377 1 412 8 1 37 220 C7ORF69,PKD1L1,LINC00525
SE_02_150100368 chr7:47786961-47798316 Sample_02_1501 Brain SHEP-21N_NOSPIKE 368 1 327 5 1 25 144 C7ORF69,PKD1L1,LINC00525
SE_02_150201120 chr7:47786991-47791137 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 1120 1 130 3 1 6 0 PKD1L1,C7ORF69,LINC00525
SE_02_150200955 chr7:47791243-47798291 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 955 1 191 2 0 16 144 C7ORF69,PKD1L1,LINC00525
SE_02_104602175 chr7:47800295-47853005 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2175 16 1513 76 4 95 2109 C7ORF69,PKD1L1,LINC00525
Genomic distribution of SEs associated with LINC00525
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC00525

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)