SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000225497
Gene: KCNMA1-AS2 Gene type: lncRNA
Strand: + External links:
Genomic region: chr10:77147652-77150100 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_055600009 chr10:77063654-77112813 Sample_02_0556 iPSCs BOFS hiPSC cl1 9 12 1323 7 0 475 528 KCNMA1,KCNMA1-AS2
SE_01_011100234 chr10:77081352-77124491 Sample_01_0111 Brain SK-N-SH 234 19 1145 13 1 330 449 KCNMA1,KCNMA1-AS2
SE_02_148200652 chr10:77097070-77112509 Sample_02_1482 Bone POE 652 11 416 1 0 157 158 KCNMA1,KCNMA1-AS2
SE_02_150600052 chr10:77150396-77195244 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 52 17 1149 39 4 145 116 KCNMA1,KCNMA1-AS2
SE_02_127500011 chr10:77150460-77203361 Sample_02_1275 Prostate PC3_Vorinostat 11 29 1368 40 4 176 116 KCNMA1,KCNMA1-AS2
SE_02_127200031 chr10:77150634-77196247 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 31 24 1169 38 4 147 116 KCNMA1,KCNMA1-AS2
SE_02_124200148 chr10:77151148-77190872 Sample_02_1242 Skin UISO_virus_negative 148 21 1050 37 4 124 116 KCNMA1,KCNMA1-AS2
SE_02_102400070 chr10:77151178-77180248 Sample_02_1024 Prostate PC3 cells 70 8 769 34 4 85 0 KCNMA1,KCNMA1-AS2
SE_02_080800597 chr10:77151235-77166862 Sample_02_0808 Ovary RMG1_ARID1A KO 597 11 416 25 4 63 0 KCNMA1,KCNMA1-AS2
SE_02_150100971 chr10:77154132-77165925 Sample_02_1501 Brain SHEP-21N_NOSPIKE 971 3 312 22 4 54 0 KCNMA1,KCNMA1-AS2
SE_02_150700378 chr10:77154143-77166608 Sample_02_1507 Brain SHEP-21N_DOX_24h 378 6 327 22 4 54 0 KCNMA1,KCNMA1-AS2
SE_02_088601859 chr10:77154171-77179918 Sample_02_0886 Skin foreskin_ p63KLF4 1859 8 669 31 4 76 0 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_126300328 chr10:77154805-77196616 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 328 9 1061 32 4 142 116 KCNMA1,KCNMA1-AS2
SE_02_127900428 chr10:77154813-77197250 Sample_02_1279 Bone Mesenchymal stem cells 428 12 1074 32 4 148 116 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_132800879 chr10:77154815-77165851 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 879 7 294 20 4 54 0 KCNMA1,KCNMA1-AS2
SE_02_143600549 chr10:77154837-77181450 Sample_02_1436 Liver LSEC-Ctrl 549 6 691 29 4 77 0 KCNMA1,KCNMA1-AS2
SE_02_127100252 chr10:77154870-77181367 Sample_02_1271 Leiomyosarcoma SK-LMS-1_WT 252 11 688 29 4 77 0 KCNMA1,KCNMA1-AS2
SE_02_127600032 chr10:77154911-77181743 Sample_02_1276 Prostate PC3_GSK126 32 27 697 29 4 77 0 KCNMA1,KCNMA1-AS2
SE_02_143800598 chr10:77154928-77180803 Sample_02_1438 Liver LSEC 598 3 672 29 4 77 0 KCNMA1,KCNMA1-AS2
SE_02_113700081 chr10:77154929-77196584 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 81 13 1053 32 4 142 116 KCNMA1,KCNMA1-AS2
SE_02_056900873 chr10:77154931-77193998 Sample_02_0569 Periodontal ligament mesenchymal stem cell 873 13 988 32 4 132 116 KCNMA1,KCNMA1-AS2
SE_02_137900151 chr10:77155033-77195874 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 151 21 1033 32 4 137 116 KCNMA1,KCNMA1-AS2
SE_02_063800726 chr10:77155059-77165955 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 726 9 289 20 4 54 0 KCNMA1,KCNMA1-AS2
SE_02_113800127 chr10:77155060-77196492 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 127 11 1048 32 4 142 116 KCNMA1,KCNMA1-AS2
SE_02_143701065 chr10:77155209-77180709 Sample_02_1437 Liver LSEC-TNF 1065 6 663 29 4 77 0 KCNMA1,KCNMA1-AS2
SE_02_076900885 chr10:77155220-77180162 Sample_02_0769 Ovary HEYA8 885 18 651 29 4 76 0 KCNMA1,KCNMA1-AS2
SE_02_113900054 chr10:77155284-77197046 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 54 14 1057 32 4 145 116 KCNMA1,KCNMA1-AS2
SE_02_108500042 chr10:77155321-77196571 Sample_02_1085 Retinal Pigmented Epithelial hTERT-RPE1 42 10 1041 32 4 142 116 KCNMA1,KCNMA1-AS2
SE_02_057200136 chr10:77155323-77180408 Sample_02_0572 Brain LN229_1_mM_glucose 136 7 652 29 4 77 0 KCNMA1,KCNMA1-AS2
SE_02_126700451 chr10:77155335-77179891 Sample_02_1267 Bone Im-GCT-4072_G34W 451 5 637 29 4 76 0 KCNMA1,KCNMA1-AS2
SE_02_127700013 chr10:77155344-77180246 Sample_02_1277 Prostate PC3_COMBO 13 25 650 29 4 76 0 KCNMA1,KCNMA1-AS2
SE_02_132200413 chr10:77155382-77205211 Sample_02_1322 Connective Tissue HT1080_WT 413 20 1273 33 4 168 116 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_086800608 chr10:77155385-77196589 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 608 20 1042 32 4 142 116 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_150500043 chr10:77155411-77195295 Sample_02_1505 Brain SHEP with tetracycline inducible MYC_DOX_2HR 43 20 1011 32 4 136 116 KCNMA1,KCNMA1-AS2
SE_02_057100271 chr10:77155435-77179425 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 271 13 631 29 4 72 0 KCNMA1,KCNMA1-AS2
SE_02_113300318 chr10:77155485-77165978 Sample_02_1133 Liver Hepatic stellate cells 318 3 281 20 4 54 0 KCNMA1,KCNMA1-AS2
SE_02_158401167 chr10:77155514-77196505 Sample_02_1584 Brain U87 GBM_Mock 1167 10 1040 32 4 142 116 KCNMA1,KCNMA1-AS2
SE_02_045200287 chr10:77155514-77196648 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 287 11 1045 32 4 142 116 KCNMA1,KCNMA1-AS2
SE_02_081100541 chr10:77155561-77196302 Sample_02_0811 Thyroid BCPAP 541 20 1033 32 4 137 116 KCNMA1,KCNMA1-AS2
SE_02_047400864 chr10:77155604-77201637 Sample_02_0474 Fibroblast umbilical cord Fibroblast 864 12 1180 33 4 161 116 KCNMA1,KCNMA1-AS2
SE_02_137800776 chr10:77155606-77180859 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 776 8 660 29 4 77 0 KCNMA1,KCNMA1-AS2
SE_02_150400042 chr10:77155606-77195233 Sample_02_1504 Brain SHEP with tetracycline inducible MYCN_0HR 42 12 1008 32 4 135 116 KCNMA1,KCNMA1-AS2
SE_02_045100417 chr10:77155613-77196490 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 417 16 1037 32 4 142 116 KCNMA1,KCNMA1-AS2
SE_02_131100878 chr10:77155631-77196720 Sample_02_1311 Bone marrow HDMSCs 878 8 1043 32 4 143 116 KCNMA1,KCNMA1-AS2
SE_02_093800650 chr10:77155663-77165974 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 650 4 278 20 4 54 0 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_057000300 chr10:77155670-77179859 Sample_02_0570 Brain LN229_10_mM_glucose 300 8 633 29 4 76 0 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_135500180 chr10:77155691-77202268 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 180 9 1191 32 4 161 116 KCNMA1,KCNMA1-AS2
SE_02_049900894 chr10:77155710-77201555 Sample_02_0499 Fetal lung IMR90 IR Senescence 894 23 1175 32 4 161 116 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_135600139 chr10:77155721-77202629 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 139 6 1199 32 4 161 116 KCNMA1,KCNMA1-AS2
SE_02_132100381 chr10:77155763-77203610 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 381 20 1225 32 4 167 116 KCNMA1,KCNMA1-AS2
SE_02_076201799 chr10:77155776-77197219 Sample_02_0762 Podocyte podocyte_CTL 1799 12 1051 31 4 148 116 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_01_010900189 chr10:77155819-77249102 Sample_01_0109 Colon transverse colon_54y 189 38 2424 40 7 322 150 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_132000550 chr10:77155852-77195830 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 550 19 1011 31 4 137 116 KCNMA1,KCNMA1-AS2
SE_02_158200378 chr10:77155871-77196777 Sample_02_1582 Renal OS-RC-2 378 18 1037 31 4 143 116 KCNMA1,KCNMA1-AS2
SE_02_060601147 chr10:77155942-77196108 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 1147 13 1018 31 4 137 116 KCNMA1,KCNMA1-AS2
SE_02_111500640 chr10:77155948-77165905 Sample_02_1115 Liver HepG2 640 4 268 19 4 54 0 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_093600668 chr10:77156081-77165890 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 668 5 265 19 4 54 0 KCNMA1,KCNMA1-AS2
SE_02_151600816 chr10:77156295-77166462 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 816 6 273 19 4 54 0 KCNMA1,KCNMA1-AS2
SE_02_126001001 chr10:77156356-77166692 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 1001 5 274 19 4 54 0 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_044800465 chr10:77156399-77196017 Sample_02_0448 Bone MNNG 465 20 1005 31 4 137 116 KCNMA1,KCNMA1-AS2
SE_02_111300892 chr10:77156439-77165881 Sample_02_1113 Bone U2OS 892 8 255 19 4 54 0 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_137701030 chr10:77156453-77166271 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 1030 8 263 19 4 54 0 KCNMA1,KCNMA1-AS2
SE_02_153400142 chr10:77156500-77166531 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 142 2 269 19 4 54 0 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_126800545 chr10:77156718-77166110 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 545 3 259 18 4 54 0 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_127400074 chr10:77156750-77179928 Sample_02_1274 Prostate PC3_DMSO 74 12 613 27 4 76 0 KCNMA1,KCNMA1-AS2
SE_02_122801028 chr10:77156843-77166642 Sample_02_1228 Mammary gland MDA-MB-231_2 1028 7 267 18 4 54 0 KCNMA1,KCNMA1-AS2
SE_00_005300082 chr10:77156854-77249420 Sample_00_0053 Embryo trophoblast cell originated from H1 82 34 2413 39 7 322 150 KCNMA1,KCNMA1-AS2
SE_02_094200152 chr10:77157005-77166682 Sample_02_0942 Brain LN229 152 9 259 18 4 54 0 KCNMA1,KCNMA1-AS2,KCNMA1-AS3
SE_02_095100251 chr10:77157479-77194713 Sample_02_0951 HMSCs hMSCs 251 18 947 29 4 132 116 KCNMA1,KCNMA1-AS2
SE_02_153500306 chr10:77159672-77166268 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 306 4 192 14 3 37 0 KCNMA1,KCNMA1-AS2
SE_02_153600473 chr10:77160013-77166202 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 473 4 179 12 2 37 0 KCNMA1,KCNMA1-AS2
SE_02_153700713 chr10:77160075-77166322 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 713 3 176 12 2 37 0 KCNMA1,KCNMA1-AS2
SE_02_053300766 chr10:77163172-77203675 Sample_02_0533 Blood vessel Circle of Willis_54y 766 16 1017 18 2 117 116 KCNMA1,KCNMA1-AS2
Genomic distribution of SEs associated with KCNMA1-AS2
Genome Browser

The strength of the tissue affected by the gene

Expression of KCNMA1-AS2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)