SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000146049
Gene: KAAG1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr6:24356903-24358285 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_002300043 chr6:24282980-24345995 Sample_00_0023 Embryo mesenchymal-stem-cell 43 16 1818 156 15 96 130 DCDC2,KAAG1
SE_02_082500101 chr6:24300427-24339709 Sample_02_0825 Stomach SNU484 101 1 1115 98 9 69 73 DCDC2,KAAG1
SE_02_148300898 chr6:24301020-24330624 Sample_02_1483 Bone RD-ES 898 13 842 75 7 54 73 DCDC2,KAAG1
SE_02_017900053 chr6:24301190-24342462 Sample_02_0179 Urinary bladder T24 53 2 1170 106 10 73 73 DCDC2,KAAG1
SE_02_072300346 chr6:24301501-24333495 Sample_02_0723 Pancreas MIAPaca2 WT 346 12 907 75 7 57 73 DCDC2,KAAG1
SE_02_154800449 chr6:24301698-24342694 Sample_02_1548 Gastrointestinal Stromal GIST-226 449 15 1151 103 10 72 53 DCDC2,KAAG1
SE_02_126700937 chr6:24301710-24342032 Sample_02_1267 Bone Im-GCT-4072_G34W 937 10 1130 102 10 71 53 DCDC2,KAAG1
SE_02_126200481 chr6:24301779-24335616 Sample_02_1262 Bone Im-GCT-3504_G34W 481 10 948 81 9 52 41 DCDC2,KAAG1
SE_02_085100080 chr6:24302558-24343572 Sample_02_0851 Mammary gland MCF7L-P_FOXA1+Dox 80 12 1142 103 10 64 0 DCDC2,KAAG1
SE_02_042800663 chr6:24304168-24342530 Sample_02_0428 Kidney 12364284_VHL- 663 16 1063 99 10 64 0 DCDC2,KAAG1
SE_02_052500495 chr6:24306174-24343328 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 495 11 1035 93 9 61 0 DCDC2,KAAG1
SE_02_003000030 chr6:24306669-24333533 Sample_02_0030 Kidney human kidney proximal tubule cells 30 12 749 63 7 45 0 DCDC2,KAAG1
SE_02_043800411 chr6:24307004-24335265 Sample_02_0438 Bone HOS 411 20 783 67 8 45 0 DCDC2,KAAG1
SE_02_061001438 chr6:24307244-24333355 Sample_02_0610 Liposarcoma MLS 1765-92 1438 8 731 61 6 45 0 DCDC2,KAAG1
SE_02_076700436 chr6:24307517-24345702 Sample_02_0767 Ovary OVCA429 436 18 1071 94 9 64 0 DCDC2,KAAG1
SE_02_126000741 chr6:24307563-24335356 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 741 11 773 67 8 45 0 DCDC2,KAAG1
SE_02_000900285 chr6:24307849-24341961 Sample_02_0009 Kidney 786-O_wtVHL 285 14 951 87 9 61 0 DCDC2,KAAG1
SE_02_052400539 chr6:24307864-24343222 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 539 14 993 90 9 61 0 DCDC2,KAAG1
SE_02_017700387 chr6:24310110-24343409 Sample_02_0177 Urinary bladder J82 387 2 922 77 9 57 0 DCDC2,KAAG1
SE_02_139900380 chr6:24312022-24335173 Sample_02_1399 Bone U2OS_siMLL3.1 380 13 639 50 8 38 0 DCDC2,KAAG1
SE_02_075701102 chr6:24312187-24325572 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 1102 2 365 34 6 24 0 DCDC2,KAAG1
SE_01_003800251 chr6:24312454-24355929 Sample_01_0038 Liver HepG2 251 8 1240 101 11 67 16 DCDC2,MRS2,KAAG1,RS2
SE_02_019700181 chr6:24312647-24333083 Sample_02_0197 Stomach SNU1750 181 9 557 42 6 38 0 DCDC2,KAAG1
SE_02_049500924 chr6:24312705-24342807 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 924 8 834 72 9 54 0 DCDC2,KAAG1
SE_02_079300452 chr6:24321858-24336311 Sample_02_0793 Brain MES20 452 9 393 27 3 21 0 DCDC2,KAAG1
SE_02_148700227 chr6:24325049-24341882 Sample_02_1487 Bone TC-32 227 8 473 38 3 30 0 DCDC2,KAAG1
SE_02_017900179 chr6:24359571-24413443 Sample_02_0179 Urinary bladder T24 179 8 1488 148 1 55 371 MRS2,DCDC2,KAAG1
SE_02_148400043 chr6:24360329-24395747 Sample_02_1484 Bone Rh1 43 9 977 84 1 35 67 DCDC2,KAAG1,MRS2
SE_02_147700241 chr6:24374587-24388606 Sample_02_1477 Bone EW-22 241 6 364 40 0 24 67 DCDC2,KAAG1,MRS2
SE_02_148600230 chr6:24374742-24392063 Sample_02_1486 Bone SK-N-MC 230 6 469 45 0 24 67 DCDC2,KAAG1,MRS2
SE_02_128000934 chr6:24374821-24395736 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 934 7 571 51 1 24 67 DCDC2,KAAG1,MRS2
SE_01_006400336 chr6:24374826-24392258 Sample_01_0064 Brain: derived from metastatic site: supra-orbital area SK-N-MC 336 5 472 45 0 24 67 DCDC2,MRS2,KAAG1
SE_02_148100435 chr6:24375010-24391314 Sample_02_1481 Bone MIC 435 7 434 42 0 24 67 DCDC2,KAAG1,MRS2
SE_02_147400552 chr6:24375140-24401018 Sample_02_1474 Bone CHLA-10 552 6 724 65 1 24 67 DCDC2,KAAG1,MRS2
SE_01_001700257 chr6:24375985-24384480 Sample_01_0017 Muscle A673 257 2 214 25 0 17 67 DCDC2,MRS2,KAAG1
SE_02_070200230 chr6:24376249-24391048 Sample_02_0702 Bone David_TC71 230 10 379 38 0 17 67 DCDC2,KAAG1,MRS2
SE_02_075700241 chr6:24381788-24415078 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 241 6 915 96 1 29 386 MRS2,DCDC2,KAAG1
SE_02_075300372 chr6:24385206-24414806 Sample_02_0753 Embryo ES-derived progenitors_FG type 372 5 839 88 1 20 304 MRS2,DCDC2,KAAG1
SE_02_012400061 chr6:24396609-24416725 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 61 4 559 77 0 28 364 MRS2,DCDC2,KAAG1
SE_02_075600592 chr6:24398199-24405983 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 592 1 232 31 0 5 170 MRS2,DCDC2,KAAG1
SE_02_032800482 chr6:24398243-24404722 Sample_02_0328 Embryo H9_naive 482 1 193 25 0 0 137 MRS2,DCDC2,KAAG1
SE_02_157200718 chr6:24399248-24406343 Sample_02_1572 iPSCs FiPSC 718 2 207 28 0 5 170 MRS2,DCDC2,KAAG1
SE_02_156700710 chr6:24399267-24406556 Sample_02_1567 iPSCs CiPSC 710 2 214 31 0 5 170 MRS2,DCDC2,KAAG1
SE_02_004200466 chr6:24399272-24405969 Sample_02_0042 Embryo endodermal CyT49_ES_D0 466 1 196 27 0 5 170 MRS2,DCDC2,KAAG1
SE_02_157001396 chr6:24399334-24406314 Sample_02_1570 iPSCs EiPSC 1396 3 207 28 0 5 170 MRS2,DCDC2,KAAG1
SE_01_003100189 chr6:24399373-24405677 Sample_01_0031 Skin GM23338 189 2 187 26 0 5 170 MRS2,DCDC2,KAAG1
Genomic distribution of SEs associated with KAAG1
Genome Browser

The strength of the tissue affected by the gene

Expression of KAAG1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)