SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000100246
Gene: DNAL4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr22:38778508-38794198 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_087500531 chr22:38691774-38752903 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 531 11 1679 133 9 299 3879 GTPBP1,SUN2,JOSD1,FAM227A,TOMM22,DNAL4,CBY1
SE_02_146800173 chr22:38695178-38744804 Sample_02_1468 Blood HUDEP-2_WT 173 6 1327 112 8 271 3187 GTPBP1,SUN2,JOSD1,FAM227A,TOMM22,DNAL4,CBY1
SE_02_076500366 chr22:38702257-38758339 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 366 17 1568 127 10 284 4140 GTPBP1,SUN2,FAM227A,JOSD1,TOMM22,DNAL4,CBY1
SE_02_122400658 chr22:38707156-38756056 Sample_02_1224 Bone marrow normal plasma cell 658 20 1392 104 9 230 3922 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_119600170 chr22:38712577-38769373 Sample_02_1196 Brain GBM32 170 27 1668 118 7 229 3998 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_119400275 chr22:38712928-38769405 Sample_02_1194 Brain GBM28 275 26 1656 117 7 227 3998 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_00_005100439 chr22:38714219-38764461 Sample_00_0051 Adrenal gland adrenal gland 30y 439 11 1467 105 7 223 3899 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_111200890 chr22:38714539-38757241 Sample_02_1112 T lymphocyte THP-6 T-ALL 890 11 1240 90 7 216 3899 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_119200468 chr22:38715197-38766111 Sample_02_1192 Brain GBM26 468 15 1480 104 7 223 3910 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_01_010100475 chr22:38715298-38756944 Sample_01_0101 Pancreas pancreas_54y 475 8 1213 88 7 216 3899 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_118100432 chr22:38717237-38763324 Sample_02_1181 Brain GBM10 432 13 1349 98 7 193 3687 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_046500715 chr22:38717367-38764608 Sample_02_0465 Adipose subcutaneous adipocytes 715 19 1391 101 7 192 3687 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_01_011000882 chr22:38717810-38764738 Sample_01_0110 Aorta thoracic aorta_37y 882 12 1386 101 7 192 3687 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_119800142 chr22:38718037-38766669 Sample_02_1198 Brain GBM34 142 28 1429 102 7 191 3786 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_121100160 chr22:38725240-38766157 Sample_02_1211 Brain GBM21 160 19 1212 86 7 170 3578 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_096900152 chr22:38725406-38766470 Sample_02_0969 Brain H3.3K27M_PL637 152 16 1214 84 7 170 3647 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_117600170 chr22:38725420-38769688 Sample_02_1176 Brain GBM04 170 16 1325 90 7 173 3659 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_100000058 chr22:38725536-38761289 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 58 15 1056 70 7 170 3560 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_100900040 chr22:38725795-38769366 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 40 26 1312 90 7 173 3659 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_104000210 chr22:38727410-38759380 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 210 26 955 66 7 136 3321 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_104500431 chr22:38728288-38753517 Sample_02_1045 Peripheral blood CD4+ CD7- cells_CTCL992 431 9 780 59 6 104 2766 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_121200528 chr22:38728991-38764536 Sample_02_1212 Brain GBM30 528 14 1075 75 5 129 3185 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_152900662 chr22:38729353-38768162 Sample_02_1529 Peripheral blood neutrophils_0BC75 662 19 1167 79 4 129 3267 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_101100009 chr22:38729632-38772034 Sample_02_1011 Brain Lateral temporal lobe_5T_AD 9 15 1284 86 5 131 3202 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_123900089 chr22:38730214-38761673 Sample_02_1239 Skin Waga_virus_positive 89 9 938 65 4 127 3068 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_093500095 chr22:38730894-38758655 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 95 9 829 57 4 114 2959 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_032700933 chr22:38731095-38757401 Sample_02_0327 Liver hepatocytes_d6 933 5 792 57 4 112 2934 SUN2,GTPBP1,TOMM22,JOSD1,DNAL4
SE_02_021100115 chr22:38731103-38769545 Sample_02_0211 Lung MRC-5_NFD_1DPT 115 9 1157 79 4 122 3032 SUN2,GTPBP1,TOMM22,JOSD1,DNAL4
SE_02_103900204 chr22:38731122-38752841 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 204 13 672 48 3 92 2494 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_01_008200556 chr22:38731250-38757701 Sample_01_0082 Right lobe of liver right-lobe-of-liver 556 4 799 57 4 112 2895 SUN2,GTPBP1,TOMM22,JOSD1,DNAL4
SE_02_032500559 chr22:38731373-38766264 Sample_02_0325 Liver hepatocytes_d1 559 5 1042 73 4 119 2904 SUN2,GTPBP1,TOMM22,JOSD1,DNAL4
SE_02_107900147 chr22:38731481-38764479 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 147 15 1001 71 4 119 2846 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_117900433 chr22:38731518-38766640 Sample_02_1179 Brain GBM08 433 9 1049 73 4 119 2937 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_119700648 chr22:38731559-38769261 Sample_02_1197 Brain GBM33 648 17 1143 79 4 122 2926 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_123600168 chr22:38731601-38761625 Sample_02_1236 Skin MKL1_virus_positive 168 8 903 64 4 119 2814 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_075800506 chr22:38731656-38757506 Sample_02_0758 Peripheral blood REH 506 8 785 57 4 112 2805 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_032601153 chr22:38731729-38766245 Sample_02_0326 Liver hepatocytes_d3 1153 6 1035 73 4 119 2814 SUN2,GTPBP1,TOMM22,JOSD1,DNAL4
SE_02_123800128 chr22:38731735-38761679 Sample_02_1238 Skin MS1_virus_positive 128 10 904 64 4 119 2785 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_104200240 chr22:38731910-38758908 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 240 7 814 57 4 114 2746 GTPBP1,SUN2,JOSD1,TOMM22,DNAL4
SE_02_123700186 chr22:38732085-38761904 Sample_02_1237 Skin MKL2_virus_positive 186 5 901 65 4 117 2703 GTPBP1,SUN2,DNAL4,JOSD1
SE_02_037400171 chr22:38732167-38761675 Sample_02_0374 Skeletal muscle RMS209 171 5 892 64 4 116 2682 SUN2,GTPBP1,DNAL4,JOSD1
SE_02_046200113 chr22:38732371-38766042 Sample_02_0462 Lung NCI-H2171 cells 113 25 1014 73 4 115 2635 GTPBP1,SUN2,DNAL4,JOSD1
SE_02_107800275 chr22:38732382-38765918 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 275 14 1011 73 4 115 2634 GTPBP1,SUN2,DNAL4,JOSD1
SE_02_153000838 chr22:38732510-38764857 Sample_02_1530 Peripheral blood neutrophils_0BA0X 838 18 983 71 4 115 2616 GTPBP1,SUN2,DNAL4,JOSD1
SE_01_010701236 chr22:38732578-38764732 Sample_01_0107 Esophagus esophagus squamous epithelium 1236 9 976 71 4 115 2604 GTPBP1,SUN2,DNAL4,JOSD1
SE_02_095500162 chr22:38733038-38769390 Sample_02_0955 Brain IDH1_2469 162 10 1103 76 4 118 2634 GTPBP1,SUN2,DNAL4,JOSD1
SE_02_083400297 chr22:38733121-38767735 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 297 10 1044 72 4 115 2611 GTPBP1,SUN2,DNAL4,JOSD1
SE_02_002300357 chr22:38733509-38759235 Sample_02_0023 Blood CD8donorC 357 13 781 54 4 113 2430 SUN2,GTPBP1,DNAL4,JOSD1
SE_02_074100574 chr22:38733580-38766076 Sample_02_0741 Muscle RH30 574 8 980 70 4 115 2426 GTPBP1,SUN2,DNAL4,JOSD1
SE_02_124800568 chr22:38733998-38757196 Sample_02_1248 Bladder RT4 568 5 709 52 4 108 2382 SUN2,DNAL4,JOSD1,GTPBP1
SE_02_083700284 chr22:38734044-38767688 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 284 11 1018 70 4 115 2481 SUN2,DNAL4,JOSD1,GTPBP1
SE_02_082601190 chr22:38734290-38766972 Sample_02_0826 Stomach gastric tumor 1190 10 989 68 4 115 2481 SUN2,DNAL4,JOSD1,GTPBP1
SE_02_083600295 chr22:38735061-38767721 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 295 6 989 67 4 108 2378 SUN2,DNAL4,JOSD1,GTPBP1
SE_02_045900469 chr22:38735405-38767633 Sample_02_0459 Blood ME-1_DMSO_6h 469 6 979 67 4 107 2301 SUN2,DNAL4,JOSD1,GTPBP1
SE_02_083300283 chr22:38737548-38758426 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 283 2 627 42 4 97 1934 SUN2,DNAL4,JOSD1,GTPBP1
SE_00_005500400 chr22:38739735-38757387 Sample_00_0055 Spleen spleen 34y 400 3 522 34 3 67 1589 SUN2,DNAL4,JOSD1,GTPBP1
SE_02_045400681 chr22:38740813-38759098 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 681 4 532 34 3 63 1409 SUN2,DNAL4,JOSD1,GTPBP1
SE_02_059100540 chr22:38740831-38759441 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 540 6 543 34 3 65 1404 SUN2,DNAL4,JOSD1,GTPBP1
SE_00_001400673 chr22:38747381-38757746 Sample_00_0014 Heart left ventricle heart-left-ventricle 673 1 314 19 1 43 1037 SUN2,DNAL4,GTPBP1,JOSD1
SE_01_007501039 chr22:38748107-38765158 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 1039 4 513 34 1 47 1037 SUN2,DNAL4,GTPBP1,JOSD1
SE_00_001101090 chr22:38748236-38757297 Sample_00_0011 Esophagus esophagus 1090 3 277 19 1 40 1037 SUN2,DNAL4,GTPBP1,JOSD1
SE_02_016300332 chr22:38748481-38754491 Sample_02_0163 Prostate C4-2B_SR2211_24h 332 5 207 13 1 20 609 SUN2,DNAL4,GTPBP1,JOSD1
SE_01_008400523 chr22:38749055-38759302 Sample_01_0084 Spleen spleen 523 1 315 18 1 43 936 SUN2,DNAL4,GTPBP1,JOSD1
SE_02_104900862 chr22:38749098-38753911 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 862 1 180 12 0 20 503 SUN2,DNAL4,JOSD1,GTPBP1
SE_02_117300488 chr22:38749150-38763423 Sample_02_1173 Brain GBM01 488 1 438 29 1 45 936 SUN2,DNAL4,JOSD1,GTPBP1
SE_02_104700656 chr22:38749207-38753632 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 656 1 168 11 0 19 503 SUN2,DNAL4,JOSD1,GTPBP1
SE_02_115700455 chr22:38749366-38761316 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 455 5 361 22 1 44 936 SUN2,DNAL4,JOSD1,GTPBP1
SE_00_003900608 chr22:38749939-38757788 Sample_00_0039 Spleen spleen_3y 608 1 250 17 1 29 861 SUN2,DNAL4,GTPBP1,JOSD1
SE_02_074900711 chr22:38749948-38766115 Sample_02_0749 Mammary gland HCC1599_GSI 711 3 488 33 1 36 867 SUN2,DNAL4,JOSD1,GTPBP1
SE_02_083500311 chr22:38749958-38767881 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 311 4 545 36 1 36 949 SUN2,DNAL4,JOSD1,GTPBP1
SE_00_000600853 chr22:38750420-38758108 Sample_00_0006 Blood CD14-positive-monocyte 853 3 234 17 1 28 759 SUN2,DNAL4,GTPBP1,JOSD1
SE_00_005600632 chr22:38750432-38764181 Sample_00_0056 Sigmoid colon sigmoid colon 3y 632 4 418 30 1 35 754 SUN2,DNAL4,JOSD1,GTPBP1
SE_02_115600482 chr22:38750445-38761258 Sample_02_1156 Peripheral blood Day6 Plasmablast CD23- memory B cell 482 3 314 18 1 35 749 SUN2,DNAL4,JOSD1,GTPBP1
SE_01_007900949 chr22:38750450-38757715 Sample_01_0079 Peyers patch Peyers-patch 949 1 223 16 1 28 747 SUN2,DNAL4,GTPBP1,JOSD1
SE_00_004000948 chr22:38750699-38757461 Sample_00_0040 Spleen spleen_30y 948 2 202 15 1 28 734 SUN2,DNAL4,GTPBP1
SE_02_087300246 chr22:38750733-38777497 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 246 8 830 54 2 51 822 SUN2,DNAL4,GTPBP1
SE_02_081601719 chr22:38750836-38757480 Sample_02_0816 Ovary Clear cell ovarian cancer 1719 2 200 15 1 28 692 SUN2,DNAL4,GTPBP1
SE_02_067300442 chr22:38751029-38757017 Sample_02_0673 Prostate LNCAP_FA 442 3 178 15 1 28 646 SUN2,DNAL4,GTPBP1
SE_02_096700902 chr22:38751267-38769327 Sample_02_0967 Brain H3.3K27M_JN57 902 7 542 35 1 38 691 SUN2,DNAL4,GTPBP1
SE_02_101400098 chr22:38751651-38766087 Sample_02_1014 Brain Lateral temporal lobe_7T_AD 98 4 418 29 1 33 547 SUN2,DNAL4,GTPBP1
SE_02_097800594 chr22:38752542-38764137 Sample_02_0978 Brain 2168_IDH1 594 4 335 22 1 29 497 SUN2,DNAL4,GTPBP1
SE_00_000100179 chr22:38754717-38755967 Sample_00_0001 Adipose adipose-tissue 179 2 29 3 0 5 299 SUN2,DNAL4,GTPBP1
SE_02_104600808 chr22:38813384-38884862 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 808 25 1965 172 6 309 3145 CBX6,NPTXR,DNAL4
SE_02_120200407 chr22:38828401-38881973 Sample_02_1202 Brain GBM38 407 15 1498 126 4 240 1894 CBX6,NPTXR,DNAL4
SE_02_147500505 chr22:38829398-38843576 Sample_02_1475 Bone CHLA-25 505 3 386 50 2 36 130 NPTXR,DNAL4,CBX6
SE_02_143300827 chr22:38832217-38882726 Sample_02_1433 Bone A673 STAG2 null 827 13 1386 110 4 231 1831 CBX6,NPTXR,DNAL4
SE_02_104900664 chr22:38840476-38884786 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 664 23 1228 83 3 224 1831 CBX6,NPTXR,DNAL4
Genomic distribution of SEs associated with DNAL4
Genome Browser

The strength of the tissue affected by the gene

Expression of DNAL4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)