SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000162777
Gene: DENND2D Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:111185969-111204535 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_002500191 chr1:111116823-111152606 Sample_02_0025 Blood CD19donorA 191 16 936 93 2 116 651 CEPT1,DRAM2,DENND2D
SE_01_008400869 chr1:111122078-111164800 Sample_01_0084 Spleen spleen 869 8 1113 107 2 122 612 CEPT1,DRAM2,DENND2D
SE_02_135000479 chr1:111122448-111154691 Sample_02_1350 Leukophereses leukophereses_p456 479 9 859 79 1 91 472 CEPT1,DRAM2,DENND2D
SE_02_075100142 chr1:111124686-111152306 Sample_02_0751 Lymphoma Rec-1_WO 142 12 750 69 1 88 465 CEPT1,DRAM2,DENND2D
SE_02_073100531 chr1:111125924-111151963 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 531 4 716 65 1 73 440 CEPT1,DRAM2,DENND2D
SE_02_021300713 chr1:111125997-111152899 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 713 5 732 66 1 73 440 CEPT1,DRAM2,DENND2D
SE_02_122500396 chr1:111127317-111150934 Sample_02_1225 Bone marrow RAJI 396 15 647 56 1 70 419 CEPT1,DRAM2,DENND2D
SE_02_103501163 chr1:111130455-111151375 Sample_02_1035 Mammary gland HCC70_Vehicle 1163 9 590 51 1 69 419 CEPT1,DRAM2,DENND2D
SE_02_103601407 chr1:111130464-111172088 Sample_02_1036 Mammary gland HCC70_XY018 1407 14 1086 104 2 122 559 CEPT1,DRAM2,DENND2D
SE_02_021200201 chr1:111202077-111247023 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 201 6 1300 178 2 65 955 CHI3L2,CHIA,DENND2D,LOC149620
SE_02_106500300 chr1:111202418-111222989 Sample_02_1065 Lymphoma KARPAS-422_DMSO_8d 300 3 552 65 1 64 196 DENND2D,CHI3L2
SE_01_009600128 chr1:111202451-111222981 Sample_01_0096 B-cell lymphoma DOHH2 128 2 552 65 1 64 196 DENND2D,CHI3L2
SE_02_107100137 chr1:111202503-111233779 Sample_02_1071 Blood Jurkat_WT 137 12 861 104 1 64 443 CHI3L2,DENND2D,CHIAP2,CEPT1,WDR77
SE_01_005500175 chr1:111202754-111226768 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 175 3 649 76 1 61 196 CHI3L2,DENND2D
SE_02_012000092 chr1:111203015-111232423 Sample_02_0120 Haematopoietic and lymphoid tissue REC-1 92 4 803 97 1 60 443 CHI3L2,LOC149620,DENND2D
SE_02_028300038 chr1:111203131-111222860 Sample_02_0283 Peripheral blood p7-CLL-patient_CD74 38 9 535 63 1 60 196 CHI3L2,DENND2D
SE_02_099900256 chr1:111207204-111232328 Sample_02_0999 Lymphoma OCI-LY1_966 256 10 701 86 1 17 247 CHI3L2,DENND2D,CHIAP2
SE_02_112100403 chr1:111208557-111238781 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 403 13 867 114 1 14 465 CHI3L2,DENND2D,CHIAP2
SE_02_077001325 chr1:111209257-111238796 Sample_02_0770 Ovary OVCA429_shLuc 1325 14 847 111 1 14 465 CHI3L2,DENND2D,CHIAP2
SE_02_034800207 chr1:111210129-111232372 Sample_02_0348 Peripheral blood CUTLL1_wild-type 207 1 619 76 1 14 247 CHI3L2,LOC149620,DENND2D
SE_02_022300051 chr1:111211447-111232453 Sample_02_0223 Haematopoietic and lymphoid tissue MOLT4_1 51 1 589 74 1 14 247 CHI3L2,LOC149620,DENND2D
SE_02_032000041 chr1:111211751-111232116 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 41 1 574 72 1 14 247 CHI3L2,LOC149620,DENND2D
SE_02_004000312 chr1:111212015-111272458 Sample_02_0040 Embryo PFG 312 8 1783 291 5 16 759 CHI3L2,CHIA,DENND2D,LOC149620
SE_00_004500365 chr1:111212088-111218406 Sample_00_0045 Thymus thymus 365 1 177 17 0 9 0 CHI3L2,DENND2D
SE_02_003801472 chr1:111212271-111229050 Sample_02_0038 Embryo DE 1472 4 467 50 1 14 69 CHI3L2,DENND2D
SE_02_121700052 chr1:111212364-111231829 Sample_02_1217 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1_Asparagine deprivation 52 3 558 67 1 14 247 CHI3L2,DENND2D,CHIAP2,CEPT1,WDR77
SE_02_075600204 chr1:111212368-111234875 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 204 5 646 79 1 14 262 CHI3L2,DENND2D,CHIAP2
SE_02_121500061 chr1:111212390-111231562 Sample_02_1215 Blood Jurkat ZBTB1 KO_Asparagine deprivation 61 2 546 66 1 13 247 CHI3L2,DENND2D,CHIAP2,CEPT1,WDR77
SE_00_005300935 chr1:111212433-111222720 Sample_00_0053 Embryo trophoblast cell originated from H1 935 6 299 35 1 13 0 DENND2D,CHI3L2
SE_02_139800780 chr1:111212461-111243090 Sample_02_1398 Bone U2OS_siNC 780 7 926 127 2 13 697 CHI3L2,CHIA,CHIAP2,DENND2D
SE_02_004300713 chr1:111212496-111222196 Sample_02_0043 Embryo endodermal CyT49_ES_D2 713 5 286 35 1 12 0 CHI3L2,DENND2D,DRAM2
SE_02_121800645 chr1:111212514-111222992 Sample_02_1218 Bone marrow Daudi 645 1 303 36 1 13 0 DENND2D,CHI3L2
SE_02_075300653 chr1:111212529-111243493 Sample_02_0753 Embryo ES-derived progenitors_FG type 653 6 939 130 2 13 750 CHI3L2,CHIA,CHIAP2,DENND2D
SE_02_023400667 chr1:111212538-111229463 Sample_02_0234 Tonsil Th17 667 1 471 50 1 13 69 CHI3L2,DENND2D
SE_02_143000735 chr1:111212613-111222998 Sample_02_1430 Blood Kasumi-3_mock-infected 735 2 303 36 1 13 0 DENND2D,CHI3L2
SE_00_003900692 chr1:111212673-111223750 Sample_00_0039 Spleen spleen_3y 692 1 325 42 1 13 0 CHI3L2,DENND2D
SE_02_075501225 chr1:111212744-111222757 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1225 4 298 35 1 13 0 DENND2D,CHI3L2
SE_02_121600044 chr1:111212999-111231848 Sample_02_1216 Blood Jurkat ZBTB1 KO 44 4 546 67 1 12 247 CHI3L2,DENND2D,CHIAP2,CEPT1,WDR77
SE_02_057300633 chr1:111213023-111223008 Sample_02_0573 Blood Nalm6_1 633 1 296 38 1 12 0 DENND2D,CHI3L2
SE_02_047600830 chr1:111213036-111237799 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 830 10 734 96 1 12 433 CHI3L2,DENND2D,CHIAP2
SE_02_121400060 chr1:111213040-111229514 Sample_02_1214 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1 60 3 464 50 1 12 69 CHI3L2,DENND2D,CEPT1,WDR77
SE_02_157400122 chr1:111213076-111228127 Sample_02_1574 Blood JURKAT 122 10 427 50 1 12 69 CHI3L2,DENND2D,CEPT1,WDR77
SE_02_064501770 chr1:111213106-111223627 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1770 5 311 42 1 12 0 DENND2D,CHI3L2
SE_00_000900522 chr1:111213553-111229171 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 522 1 440 49 1 11 69 CHI3L2,DENND2D
SE_00_004400505 chr1:111213592-111229246 Sample_00_0044 Cord blood T-cell 505 1 440 49 1 11 69 CHI3L2,DENND2D
SE_00_002700806 chr1:111213661-111224107 Sample_00_0027 Blood natural-killer-cell 806 1 306 41 1 11 0 CHI3L2,DENND2D
SE_02_142901086 chr1:111213888-111224055 Sample_02_1429 Blood GM12878_WT 1086 1 295 39 1 11 0 DENND2D,CHI3L2,CEPT1,WDR77,DRAM2
SE_02_064601248 chr1:111214000-111223532 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1248 3 277 37 1 11 0 DENND2D,CHI3L2
SE_02_063900210 chr1:111214279-111226125 Sample_02_0639 Blood T-ALL PDX 210 6 339 39 1 11 0 DENND2D,CHI3L2
SE_02_127801140 chr1:111214458-111231418 Sample_02_1278 Chordoma UCH1_DMSO_48h 1140 4 482 58 1 11 236 CHI3L2,DENND2D,CHIAP2
SE_02_046300413 chr1:111214657-111223026 Sample_02_0463 Blood OCI-AML3 cells 413 8 248 31 1 11 0 DENND2D,CHI3L2
SE_02_047000006 chr1:111215436-111222940 Sample_02_0470 Blood GM12878 6 2 223 28 1 11 0 DENND2D,CHI3L2,CEPT1,WDR77,DRAM2
SE_02_061400276 chr1:111216748-111252397 Sample_02_0614 Liposarcoma MLPS_T2 276 23 1099 175 3 5 759 CHI3L2,CHIA,CHIAP2,DENND2D
SE_02_141001638 chr1:111223118-111250494 Sample_02_1410 Brain GSC6 1638 4 831 139 2 0 759 CHI3L2,CHIA,CHIAP2,DENND2D
SE_02_152200225 chr1:111223424-111276283 Sample_02_1522 Skin A375 RTKi 225 14 1554 272 4 2 759 CHI3L2,CHIA,CHIAP2,DENND2D
SE_00_004500545 chr1:111224747-111229516 Sample_00_0045 Thymus thymus 545 1 124 8 0 0 69 CHI3L2,DENND2D
SE_02_057000776 chr1:111234256-111254896 Sample_02_0570 Brain LN229_10_mM_glucose 776 8 658 133 3 2 512 CHI3L2,CHIA,CHIAP2,DENND2D
Genomic distribution of SEs associated with DENND2D
Genome Browser

The strength of the tissue affected by the gene

Expression of DENND2D

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)