SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000235700
Gene: CYCSP52 Gene type: processed_pseudogene
Strand: + External links:
Genomic region: chr1:157128362-157128671 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104601386 chr1:157063005-157125359 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1386 19 1923 263 12 130 898 ETV3,ETV3L,CYCSP52,ARHGEF11
SE_02_075500266 chr1:157129601-157164194 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 266 5 900 40 16 136 431 ETV3,ETV3L,CYCSP52
SE_02_075200336 chr1:157129745-157163793 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 336 3 886 39 15 135 431 ETV3,ETV3L,CYCSP52
SE_02_149600008 chr1:157130206-157156809 Sample_02_1496 Other monocyte-derived dendritic cells_R848_24h 8 14 678 24 3 135 431 ETV3,ETV3L,CYCSP52,ARHGEF11
SE_02_008600748 chr1:157130723-157164876 Sample_02_0086 Pancreas CAPAN1 748 3 883 39 16 136 431 ETV3,ETV3L,CYCSP52
SE_02_052100071 chr1:157131482-157164195 Sample_02_0521 Colon SW480 71 5 852 39 16 136 431 ETV3,ETV3L,CYCSP52
SE_02_006300703 chr1:157131494-157158692 Sample_02_0063 Skin Keratinocytes 703 3 689 25 4 135 431 ETV3,ETV3L,CYCSP52
SE_02_012400383 chr1:157131502-157164317 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 383 3 853 39 16 136 431 ETV3,ETV3L,CYCSP52
SE_00_002400191 chr1:157131555-157163791 Sample_00_0024 Embryo mesendoderm 191 7 841 38 15 135 431 ETV3,ETV3L,CYCSP52
SE_02_035600159 chr1:157131754-157164212 Sample_02_0356 Colon Sw480 159 4 842 39 16 136 431 ETV3,ETV3L,CYCSP52
SE_02_121900015 chr1:157131780-157199905 Sample_02_1219 Bone marrow H929 15 13 1898 72 21 139 431 ETV3,ETV3L,CYCSP52
SE_02_124800438 chr1:157131910-157156160 Sample_02_1248 Bladder RT4 438 5 615 24 3 135 431 ETV3,ETV3L,CYCSP52
SE_02_123000901 chr1:157131934-157156189 Sample_02_1230 Lung PC9 901 8 617 24 3 135 431 ETV3,ETV3L,CYCSP52
SE_00_001101116 chr1:157131939-157148952 Sample_00_0011 Esophagus esophagus 1116 7 442 19 3 118 431 ETV3,ETV3L,CYCSP52
SE_01_010701066 chr1:157132026-157155349 Sample_01_0107 Esophagus esophagus squamous epithelium 1066 7 586 24 3 134 431 ETV3,ETV3L,CYCSP52
SE_02_081800672 chr1:157132053-157164375 Sample_02_0818 Ovary High-grade serous ovarian cancer 672 11 843 39 16 136 431 ETV3,ETV3L,CYCSP52
SE_02_092901242 chr1:157132143-157156113 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 1242 6 606 24 3 135 431 ETV3,ETV3L,CYCSP52
SE_02_112100820 chr1:157132333-157145568 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 820 7 349 14 2 102 431 ETV3,ETV3L,CYCSP52
SE_02_035800454 chr1:157133822-157157040 Sample_02_0358 Colon LS180 454 5 590 22 3 127 362 ETV3,ETV3L,CYCSP52
SE_02_149400039 chr1:157133909-157156106 Sample_02_1494 Other monocyte-derived dendritic cells_0h 39 14 560 22 3 127 354 ETV3,ETV3L,CYCSP52,ARHGEF11
SE_02_013200843 chr1:157134303-157156885 Sample_02_0132 Lung 1015_CL 843 2 578 22 3 123 327 ETV3,ETV3L,CYCSP52
SE_02_074600896 chr1:157134456-157139408 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 896 2 135 6 1 37 317 ETV3,ETV3L,CYCSP52
SE_02_105900384 chr1:157134649-157158359 Sample_02_1059 Bone A673_WT 384 9 602 23 4 123 317 ETV3,ETV3L,CYCSP52
SE_02_147300384 chr1:157134649-157158359 Sample_02_1473 Bone A-673 384 9 602 23 4 123 317 ETV3,ETV3L,CYCSP52
SE_02_064900963 chr1:157134961-157145068 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 963 3 272 11 1 89 317 ETV3,ETV3L,CYCSP52
SE_02_013100705 chr1:157135030-157155899 Sample_02_0131 Lung 1015_PT 705 3 528 21 2 123 317 ETV3,ETV3L,CYCSP52
SE_02_048001234 chr1:157135060-157158253 Sample_02_0480 Gingival epithelial HGEP 1234 7 586 22 3 123 317 ETV3,ETV3L,CYCSP52
SE_02_064500709 chr1:157135097-157168293 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 709 9 866 39 17 124 317 ETV3,ETV3L,CYCSP52
SE_02_064801343 chr1:157135132-157158221 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1343 13 582 22 3 123 317 ETV3,ETV3L,CYCSP52
SE_02_125400552 chr1:157135164-157142846 Sample_02_1254 Bladder Bladder tumor Basal1 552 2 215 7 1 63 317 ETV3,ETV3L,CYCSP52
SE_02_065201220 chr1:157135188-157158128 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1220 10 577 22 3 123 317 ETV3,ETV3L,CYCSP52
SE_02_065000689 chr1:157135210-157157972 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 689 8 569 22 3 123 317 ETV3,ETV3L,CYCSP52
SE_02_143201020 chr1:157135494-157158108 Sample_02_1432 Bone A673 STAG2 WT 1020 7 567 22 3 122 293 ETV3,ETV3L,CYCSP52
SE_02_030400297 chr1:157135591-157157068 Sample_02_0304 Neuroblastoma N206 297 2 546 21 2 112 272 ETV3,ETV3L,CYCSP52
SE_02_064701312 chr1:157135782-157158081 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1312 9 561 22 3 104 247 ETV3,ETV3L,CYCSP52
SE_02_033900158 chr1:157135883-157156826 Sample_02_0339 Neuroblastoma NGP 158 2 538 21 2 104 236 ETV3,ETV3L,CYCSP52
SE_02_018100818 chr1:157136017-157155929 Sample_02_0181 melanoma COLO679 818 3 504 20 2 104 236 ETV3,ETV3L,CYCSP52
SE_02_136500592 chr1:157136037-157156155 Sample_02_1365 Pancreas AsPC1-untreated 592 3 510 20 2 104 236 ETV3,ETV3L,CYCSP52
SE_00_004900540 chr1:157136098-157155488 Sample_00_0049 Small intestine small intestine 30y 540 6 489 20 2 103 236 ETV3,ETV3L,CYCSP52
SE_02_146001045 chr1:157136102-157156245 Sample_02_1460 Blood Mutz-3 1045 3 514 20 2 104 236 ETV3,ETV3L,CYCSP52
SE_02_119900640 chr1:157136198-157158312 Sample_02_1199 Brain GBM35 640 4 559 21 3 103 226 ETV3,ETV3L,CYCSP52
SE_02_105800561 chr1:157136358-157158264 Sample_02_1058 Bone A673_SA2 Rescue 561 9 555 21 3 102 209 ETV3,ETV3L,CYCSP52
SE_00_000301102 chr1:157136674-157155921 Sample_00_0003 Adrenal gland adrenal-gland_97d 1102 3 486 20 2 98 188 ETV3,ETV3L,CYCSP52
SE_02_031900569 chr1:157136767-157157052 Sample_02_0319 Neuroblastoma NB-EBc1 569 2 517 20 2 94 188 ETV3,ETV3L,CYCSP52
SE_02_018500985 chr1:157136957-157156691 Sample_02_0185 Skin UACC257 985 3 507 20 2 94 188 ETV3,ETV3L,CYCSP52
SE_02_018400725 chr1:157137336-157156396 Sample_02_0184 Skin SKMEL30 725 4 492 20 2 94 188 ETV3,ETV3L,CYCSP52
SE_02_149500229 chr1:157141718-157154930 Sample_02_1495 Other monocyte-derived dendritic cells_R848_1h 229 6 309 14 1 68 0 ETV3L,CYCSP52,ETV3
SE_02_104601861 chr1:157151959-157200832 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1861 15 1429 52 18 15 0 CYCSP52,ETV3
SE_02_155500193 chr1:157155715-157204454 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 193 16 1470 52 18 5 0 CYCSP52,ETV3
SE_02_004300518 chr1:157160615-157164063 Sample_02_0043 Embryo endodermal CyT49_ES_D2 518 2 100 13 11 1 0 CYCSP52,ETV3
Genomic distribution of SEs associated with CYCSP52
Genome Browser

The strength of the tissue affected by the gene

Expression of CYCSP52

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)