SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000163499
Gene: CRYBA2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr2:218990189-218993422 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_108200637 chr2:218951720-218980262 Sample_02_1082 Retina retina 637 7 719 61 4 191 958 LINC00608,CDK5R2,LOC100129175,FEV,MIR375,CRYBA2,LINC01494,CCDC108,IHH,NHEJ1,CTDSP1
SE_02_108300675 chr2:218951737-218982010 Sample_02_1083 Macula macula 675 11 747 62 4 205 1231 LINC00608,CDK5R2,FEV,LOC100129175,MIR375,CRYBA2,LINC01494
SE_02_069400134 chr2:218952483-218968638 Sample_02_0694 Lung NCI-H82_no infection 134 5 370 33 3 174 711 CDK5R2,LOC100129175,FEV,LINC00608,MIR375,CRYBA2,LINC01494
SE_02_030400371 chr2:218953209-218965932 Sample_02_0304 Neuroblastoma N206 371 2 291 21 3 173 711 CDK5R2,CRYBA2,FEV,LOC151300,MIR375
SE_02_110500331 chr2:218953603-218965753 Sample_02_1105 Brain NBL-S 331 1 275 18 3 173 711 CDK5R2,LOC100129175,FEV,LINC00608,MIR375,CRYBA2,LINC01494
SE_02_031900502 chr2:218953977-218966229 Sample_02_0319 Neuroblastoma NB-EBc1 502 2 277 17 3 173 711 CDK5R2,CRYBA2,FEV,LOC151300,MIR375
SE_02_150000509 chr2:218954005-218965166 Sample_02_1500 Brain KELLY_untreat 509 3 249 16 3 173 711 CDK5R2,LOC100129175,FEV,LINC00608,MIR375,CRYBA2,LINC01494
SE_02_123500283 chr2:218954161-218965669 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 283 5 254 14 3 172 711 CDK5R2,LOC100129175,FEV,LINC00608,MIR375,CRYBA2,LINC01494
SE_02_031500416 chr2:218954245-218965625 Sample_02_0315 Neuroblastoma TR14 416 2 251 14 3 172 711 CDK5R2,CRYBA2,FEV,LOC151300,MIR375
SE_02_025300389 chr2:218954332-218965136 Sample_02_0253 Brain BE2C_DMSO 389 2 238 14 3 172 711 CDK5R2,CRYBA2,FEV,LOC151300,MIR375
SE_02_110400663 chr2:218954616-218965539 Sample_02_1104 Brain NB-69 663 3 241 14 3 172 711 CDK5R2,LOC100129175,FEV,LINC00608,MIR375,CRYBA2,LINC01494
SE_02_004700802 chr2:218958339-218965863 Sample_02_0047 Pancreatic endoderm IIDP/donor790 802 1 164 9 2 146 711 CDK5R2,CRYBA2,FEV,LOC151300,MIR375
SE_02_003200886 chr2:218958439-218965247 Sample_02_0032 Pancreas pancreatic-islets-M 886 1 148 9 2 146 711 CDK5R2,CRYBA2,FEV,LOC151300,MIR375
SE_02_042100305 chr2:218958601-218965230 Sample_02_0421 Brain BE2C_3 305 1 147 9 2 146 711 CDK5R2,CRYBA2,FEV,LOC151300,MIR375
SE_02_077501781 chr2:218958995-218963232 Sample_02_0775 Pancreas EndoC-BH1_SE 1781 1 94 5 0 115 711 CDK5R2,LOC100129175,FEV,LINC00608,MIR375,CRYBA2,LINC01494
SE_02_066300655 chr2:218960314-218965515 Sample_02_0663 Thyroid TT 655 1 110 8 1 103 456 CDK5R2,LOC100129175,FEV,LINC00608,MIR375,CRYBA2,LINC01494
SE_02_128300526 chr2:218960321-218964918 Sample_02_1283 Lung NCI-H2107_p8-15 526 2 95 8 1 103 455 CDK5R2,LOC100129175,FEV,LINC00608,MIR375,CRYBA2,LINC01494
SE_02_030400276 chr2:218978944-218988210 Sample_02_0304 Neuroblastoma N206 276 1 205 5 0 87 765 FEV,CRYBA2,LOC151300,MIR375,CDK5R2
SE_02_029600545 chr2:218979090-218987614 Sample_02_0296 Neuroblastoma CLB-BER-Lud 545 1 193 4 0 87 765 FEV,CRYBA2,LOC151300,MIR375,CDK5R2
SE_02_150000168 chr2:218979457-219000051 Sample_02_1500 Brain KELLY_untreat 168 4 520 12 0 159 1294 CRYBA2,FEV,CDK5R2,LOC100129175,LINC00608,MIR375,LINC01494,CCDC108
SE_02_025300206 chr2:218979503-218988031 Sample_02_0253 Brain BE2C_DMSO 206 1 184 4 0 87 765 FEV,CRYBA2,LOC151300,MIR375,CDK5R2
SE_02_042100294 chr2:218979563-218987041 Sample_02_0421 Brain BE2C_3 294 1 170 4 0 87 765 FEV,CRYBA2,LOC151300,MIR375,CDK5R2
SE_02_007500129 chr2:218979605-218987121 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 129 1 171 4 0 87 765 FEV,CRYBA2,LOC151300,MIR375,CDK5R2
SE_02_123600054 chr2:218979909-219000019 Sample_02_1236 Skin MKL1_virus_positive 54 7 508 12 0 159 1294 CRYBA2,FEV,CDK5R2,LOC100129175,LINC00608,MIR375,LINC01494,CCDC108,IHH,WNT6,WNT10A
SE_02_123900327 chr2:218980830-218985192 Sample_02_1239 Skin Waga_virus_positive 327 1 100 2 0 49 577 FEV,CDK5R2,LOC100129175,LINC00608,MIR375,CRYBA2
SE_02_110500457 chr2:218981954-218988011 Sample_02_1105 Brain NBL-S 457 1 142 3 0 73 497 FEV,CDK5R2,LOC100129175,LINC00608,MIR375,CRYBA2
SE_02_031900676 chr2:218982869-218987801 Sample_02_0319 Neuroblastoma NB-EBc1 676 1 122 1 0 57 401 FEV,CRYBA2,LOC151300,MIR375,CDK5R2
SE_02_025300118 chr2:218994881-219004070 Sample_02_0253 Brain BE2C_DMSO 118 1 261 7 0 75 469 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_031900454 chr2:218994915-219003668 Sample_02_0319 Neuroblastoma NB-EBc1 454 1 248 7 0 74 418 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_110500141 chr2:218994945-219003503 Sample_02_1105 Brain NBL-S 141 1 244 7 0 73 418 LOC100129175,MIR375,CCDC108,CDK5R2,FEV,LINC00608,CRYBA2
SE_02_030800165 chr2:218995019-219003660 Sample_02_0308 Neuroblastoma SJNB1 165 1 246 7 0 74 418 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_066300198 chr2:218995063-219003595 Sample_02_0663 Thyroid TT 198 1 241 7 0 74 418 LOC100129175,MIR375,CCDC108,CDK5R2,FEV,LINC00608,CRYBA2
SE_02_031500489 chr2:218995088-219001757 Sample_02_0315 Neuroblastoma TR14 489 1 173 6 0 41 83 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_030400291 chr2:218995236-219004007 Sample_02_0304 Neuroblastoma N206 291 1 242 7 0 74 456 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_030600516 chr2:218995276-219004010 Sample_02_0306 Autonomic ganglia SH-SY5Y 516 1 241 7 0 74 457 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_042100155 chr2:218995469-219003772 Sample_02_0421 Brain BE2C_3 155 1 229 7 0 74 418 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_034000331 chr2:218995535-219003896 Sample_02_0340 Brain BE2C_2 331 1 227 7 0 74 433 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_025100124 chr2:218995559-219003903 Sample_02_0251 Autonomic ganglia SH-SY5Y-MYCN-OFF 124 1 227 7 0 74 435 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_110800106 chr2:218995766-219003446 Sample_02_1108 Brain SK-N-BE_2_-C 106 1 215 7 0 73 417 LOC100129175,MIR375,CCDC108,CDK5R2,FEV,LINC00608,CRYBA2
SE_02_031300420 chr2:218995767-219003648 Sample_02_0313 Neuroblastoma SK-N-DZ 420 1 220 7 0 74 418 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_110400133 chr2:218995882-219003364 Sample_02_1104 Brain NB-69 133 1 209 7 0 73 404 LOC100129175,MIR375,CCDC108,CDK5R2,FEV,LINC00608,CRYBA2
SE_02_068600175 chr2:218995960-219003218 Sample_02_0686 Lung NCI-H128_no infection 175 3 204 7 0 72 371 LOC100129175,MIR375,CCDC108,CDK5R2,FEV,LINC00608,CRYBA2
SE_02_007500209 chr2:218996022-219003395 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 209 1 209 7 0 72 406 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_007200228 chr2:218996139-219003358 Sample_02_0072 Lung NCI-H82_DMSO 228 2 207 7 0 72 403 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_123900111 chr2:218996219-219001978 Sample_02_1239 Skin Waga_virus_positive 111 1 154 6 0 53 115 MIR375,CDK5R2,LOC100129175,FEV,LINC00608,CRYBA2,CCDC108
SE_02_123700136 chr2:218996246-219001917 Sample_02_1237 Skin MKL2_virus_positive 136 1 150 6 0 47 115 MIR375,CDK5R2,LOC100129175,FEV,LINC00608,CRYBA2,CCDC108
SE_02_004900285 chr2:218996252-219003457 Sample_02_0049 Embryo endodermal CyT49_GTtoH 285 1 208 7 0 72 417 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_128300279 chr2:218996260-219002012 Sample_02_1283 Lung NCI-H2107_p8-15 279 2 154 6 0 54 115 MIR375,CDK5R2,LOC100129175,FEV,LINC00608,CRYBA2,CCDC108
SE_01_011100588 chr2:218996268-219003220 Sample_01_0111 Brain SK-N-SH 588 1 201 7 0 72 371 LOC100129175,MIR375,CCDC108,CDK5R2,FEV,LINC00608,CRYBA2
SE_02_123500507 chr2:218996281-219003153 Sample_02_1235 Brain Neuroblastoma PDX tumour cells 507 1 196 7 0 69 357 LOC100129175,MIR375,CCDC108,CDK5R2,FEV,LINC00608,CRYBA2
SE_02_129200126 chr2:218996314-219001503 Sample_02_1292 Lung JHU-LX110-SCLC PDX 126 3 137 5 0 32 14 CDK5R2,LOC100129175,FEV,LINC00608,MIR375,CRYBA2,CCDC108
SE_02_075500598 chr2:218996314-219003164 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 598 3 196 7 0 69 361 LOC100129175,MIR375,CCDC108,CDK5R2,FEV,LINC00608,CRYBA2
SE_02_049400816 chr2:218996327-219001930 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 816 1 149 6 0 47 115 MIR375,CDK5R2,LOC100129175,FEV,LINC00608,CRYBA2,CCDC108
SE_02_003900138 chr2:218996993-219003368 Sample_02_0039 Embryo AFG 138 1 187 6 0 72 404 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_003800203 chr2:218997201-219003294 Sample_02_0038 Embryo DE 203 1 182 6 0 66 393 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_004800614 chr2:218997727-219003394 Sample_02_0048 Embryo endodermal CyT49_HE 614 1 171 6 0 64 406 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_004300163 chr2:218997866-219002740 Sample_02_0043 Embryo endodermal CyT49_ES_D2 163 2 141 6 0 60 259 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_00_002400547 chr2:218998012-219002634 Sample_00_0024 Embryo mesendoderm 547 1 131 6 0 58 242 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_004400125 chr2:218998087-219003114 Sample_02_0044 Embryo endodermal CyT49_ES_D5 125 1 153 6 0 58 347 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_004500302 chr2:218998357-219003115 Sample_02_0045 Embryo endodermal CyT49_ES_D7 302 1 141 6 0 58 347 MIR375,CCDC108,CRYBA2,FEV,LOC151300,CDK5R2
SE_02_077501196 chr2:218998617-219003470 Sample_02_0775 Pancreas EndoC-BH1_SE 1196 1 144 6 0 61 418 LOC100129175,MIR375,CCDC108,CDK5R2,FEV,LINC00608,CRYBA2
SE_00_002000486 chr2:219041970-219091730 Sample_00_0020 Large intestine large-intestine_108d 486 7 1271 166 8 372 1158 NHEJ1,MIR3131,IHH,CCDC108,CRYBA2,MIR375
SE_00_003600032 chr2:219042225-219161462 Sample_00_0036 Small intestine small-intestine_108days 32 16 2915 350 15 848 1568 NHEJ1,MIR3131,IHH,SLC23A3,ZFAND2B,C2ORF24,CCDC108,CRYBA2,FAM134A,MIR375
Genomic distribution of SEs associated with CRYBA2
Genome Browser

The strength of the tissue affected by the gene

Expression of CRYBA2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)