Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000204262
Gene: COL5A2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr2:189031898-189225312 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_102400111 chr2:189188670-189233959 Sample_02_1024 Prostate PC3 cells 111 22 1057 63 1 43 0 COL5A2
SE_02_058800499 chr2:189190975-189232078 Sample_02_0588 Cervix HeLa Kyoto_untreated 499 14 958 53 1 38 0 COL5A2
SE_02_127500389 chr2:189191291-189231536 Sample_02_1275 Prostate PC3_Vorinostat 389 31 928 51 1 38 0 COL5A2
SE_02_045300250 chr2:189196259-189234731 Sample_02_0453 Neuroblastoma SJNB3 250 6 872 52 1 40 0 COL5A2
SE_03_000800557 chr2:189199504-189236609 Sample_03_0008 Lung A549_dexamethasone_7h 557 4 848 50 1 40 0 COL5A2
SE_03_001000446 chr2:189199579-189236399 Sample_03_0010 Lung A549_dexamethasone_1h 446 4 840 49 1 40 0 COL5A2
SE_03_000900430 chr2:189199775-189236516 Sample_03_0009 Lung A549_dexamethasone_3h 430 3 844 50 1 40 0 COL5A2
SE_03_001400382 chr2:189199805-189235325 Sample_03_0014 Lung A549_dexamethasone_2h 382 4 808 48 1 40 0 COL5A2
SE_03_001100234 chr2:189199923-189226602 Sample_03_0011 Lung A549_dexamethasone_5h 234 3 593 38 1 38 0 COL5A2
SE_03_001300489 chr2:189199955-189236407 Sample_03_0013 Lung A549 489 3 839 49 1 40 0 COL5A2
SE_02_101701830 chr2:189199965-189221644 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1830 7 464 33 1 27 0 COL5A2
SE_03_001600336 chr2:189200055-189236356 Sample_03_0016 Lung A549_dexamethasone_6h 336 3 833 49 1 40 0 COL5A2
SE_03_001500582 chr2:189200059-189235063 Sample_03_0015 Lung A549_dexamethasone_8h 582 5 804 48 1 40 0 COL5A2
SE_03_000400376 chr2:189200265-189235717 Sample_03_0004 Lung A549_dexamethasone_4h 376 4 806 48 1 40 0 COL5A2
SE_02_030500188 chr2:189200626-189225527 Sample_02_0305 Neuroblastoma SH-EP 188 3 553 36 1 38 0 COL5A2
SE_02_125900342 chr2:189200736-189233330 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 342 7 751 46 1 39 0 COL5A2
SE_02_059000461 chr2:189200824-189232140 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 461 15 726 42 1 38 0 COL5A2
SE_02_126100291 chr2:189200861-189225083 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 291 8 537 35 1 38 0 COL5A2
SE_02_126000348 chr2:189201009-189236199 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 348 7 816 47 1 40 0 COL5A2
SE_03_000500506 chr2:189201158-189235192 Sample_03_0005 Lung A549_dexamethasone_0.5h 506 5 786 45 1 40 0 COL5A2
SE_02_126200617 chr2:189201277-189217850 Sample_02_1262 Bone Im-GCT-3504_G34W 617 4 362 21 1 27 0 COL5A2
SE_02_058900787 chr2:189201294-189222977 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 787 7 476 30 1 36 0 COL5A2
SE_02_005300089 chr2:189201533-189232846 Sample_02_0053 Colon DKO1 89 8 725 42 1 38 0 COL5A2
SE_04_000700318 chr2:189202133-189232954 Sample_04_0007 Lung A549 FOXA2 shRNA2 318 13 716 41 1 38 0 COL5A2
SE_02_150300613 chr2:189202133-189235588 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 613 9 774 44 1 40 0 COL5A2
SE_02_018200391 chr2:189202177-189233438 Sample_02_0182 melanoma LOX-IMVI 391 9 723 42 1 40 0 COL5A2
SE_02_154800482 chr2:189202196-189236185 Sample_02_1548 Gastrointestinal Stromal GIST-226 482 7 795 44 1 40 0 COL5A2
SE_02_017700515 chr2:189202198-189227405 Sample_02_0177 Urinary bladder J82 515 3 572 33 1 38 0 COL5A2
SE_02_149700349 chr2:189202213-189223024 Sample_02_1497 Brain SHEP-21N 349 9 460 29 1 36 0 COL5A2
SE_02_150600266 chr2:189202226-189234103 Sample_02_1506 Brain SHEP with tetracycline inducible MYC_DOX_6HR 266 11 740 43 1 40 0 COL5A2
SE_02_150200783 chr2:189202395-189223060 Sample_02_1502 Brain SHEP-21N_DOX_24h_NOSPIKE 783 7 456 29 1 38 0 COL5A2
SE_02_126300132 chr2:189202415-189298277 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 132 17 2381 191 3 97 0 COL5A2
SE_04_000400220 chr2:189202432-189232208 Sample_04_0004 Lung A549 TEAD2 shRNA TGFb 220 10 697 38 1 38 0 COL5A2
SE_02_007300727 chr2:189202442-189223032 Sample_02_0073 Other 90-8TL_DMSO 727 5 456 29 1 37 0 COL5A2
SE_02_126400965 chr2:189202716-189224436 Sample_02_1264 Bone Im-GCT-4072_G34W KO 965 6 489 31 1 38 0 COL5A2
SE_02_152300574 chr2:189202829-189231943 Sample_02_1523 Lung A549 DMSO 574 6 687 36 1 38 0 COL5A2
SE_02_150100479 chr2:189202869-189222832 Sample_02_1501 Brain SHEP-21N_NOSPIKE 479 8 447 29 1 35 0 COL5A2
SE_02_149800401 chr2:189202924-189222593 Sample_02_1498 Brain SHEP-21N_DOX_2h 401 7 432 28 1 30 0 COL5A2
SE_02_042000512 chr2:189203094-189233575 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 512 8 715 42 1 40 0 COL5A2
SE_02_048101857 chr2:189203155-189233511 Sample_02_0481 Mammary gland MDA-MB231 1857 8 711 41 1 40 0 COL5A2,MIR3129
SE_02_081100991 chr2:189203234-189232173 Sample_02_0811 Thyroid BCPAP 991 9 683 37 1 34 0 COL5A2
SE_02_150700611 chr2:189203245-189218677 Sample_02_1507 Brain SHEP-21N_DOX_24h 611 4 348 22 1 23 0 COL5A2
SE_04_000800313 chr2:189203369-189232179 Sample_04_0008 Lung A549 shRNA control 313 11 682 37 1 30 0 COL5A2
SE_02_017200498 chr2:189203435-189299215 Sample_02_0172 Lung IMR-90_quiescent 498 14 2389 195 3 86 0 COL5A2
SE_02_126700896 chr2:189203558-189233828 Sample_02_1267 Bone Im-GCT-4072_G34W 896 6 708 42 1 29 0 COL5A2
SE_02_136800124 chr2:189203597-189232245 Sample_02_1368 Pancreas MIA PaCa-2-untreated 124 16 676 37 1 27 0 COL5A2
SE_02_143700910 chr2:189203659-189236159 Sample_02_1437 Liver LSEC-TNF 910 8 769 43 1 29 0 COL5A2
SE_04_000300349 chr2:189203777-189232231 Sample_04_0003 Lung A549 TEAD4 shRNA TGFb 349 8 674 37 1 27 0 COL5A2
SE_02_047400356 chr2:189203777-189234262 Sample_02_0474 Fibroblast umbilical cord Fibroblast 356 10 716 42 1 29 0 COL5A2
SE_02_135500312 chr2:189203813-189222994 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 312 3 432 28 1 25 0 COL5A2
SE_02_135600160 chr2:189203829-189223087 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 160 3 431 28 1 27 0 COL5A2
SE_02_050001236 chr2:189203846-189222836 Sample_02_0500 Fetal lung IMR90_#2 1236 9 426 28 1 24 0 COL5A2
SE_01_001800676 chr2:189203861-189237191 Sample_01_0018 Submandibular Salivary Gland ACC112 676 5 791 44 1 29 0 COL5A2
SE_02_101600523 chr2:189203887-189234010 Sample_02_1016 Embryo H9_Mesendoderm_24h 523 11 707 42 1 29 0 COL5A2
SE_02_087801345 chr2:189203902-189222860 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1345 6 425 28 1 24 0 COL5A2
SE_02_087901190 chr2:189203915-189222826 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1190 4 424 28 1 24 0 COL5A2
SE_01_006600599 chr2:189204008-189219300 Sample_01_0066 Smooth muscle smooth-muscle-cell 599 3 346 23 1 16 0 COL5A2
SE_02_088001187 chr2:189204014-189223132 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 1187 3 428 28 1 27 0 COL5A2
SE_01_001900880 chr2:189204019-189218964 Sample_01_0019 Brain and spinal cord astrocyte 880 3 339 22 1 16 0 COL5A2
SE_02_008800340 chr2:189204058-189222874 Sample_02_0088 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_0 340 5 423 28 1 24 0 COL5A2
SE_02_113300811 chr2:189204081-189222795 Sample_02_1133 Liver Hepatic stellate cells 811 4 421 28 1 24 0 COL5A2
SE_02_088101129 chr2:189204086-189223263 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 1129 4 430 28 1 27 0 COL5A2
SE_02_127600278 chr2:189204146-189233989 Sample_02_1276 Prostate PC3_GSK126 278 27 700 41 1 29 0 COL5A2
SE_02_041900955 chr2:189204153-189233329 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 955 10 685 40 1 28 0 COL5A2
SE_02_083900500 chr2:189204212-189222854 Sample_02_0839 Embryo hNPCs_K755R/+ 500 6 418 27 1 24 0 COL5A2
SE_02_096500433 chr2:189204238-189213806 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 433 6 215 9 1 12 0 COL5A2
SE_00_002400518 chr2:189204550-189219273 Sample_00_0024 Embryo mesendoderm 518 7 329 21 1 16 0 COL5A2
SE_02_127400114 chr2:189204570-189227061 Sample_02_1274 Prostate PC3_DMSO 114 18 517 30 1 27 0 COL5A2
SE_02_075501045 chr2:189204627-189220315 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 1045 6 350 23 1 16 0 COL5A2
SE_02_006500701 chr2:189208544-189219446 Sample_02_0065 Embryo KO2-Late_G1 701 2 243 18 1 14 0 COL5A2
SE_02_009100293 chr2:189208613-189222837 Sample_02_0091 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_Control_cycle_0 293 4 317 23 1 22 0 COL5A2
SE_02_137901299 chr2:189208758-189222923 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 1299 5 318 23 0 22 0 COL5A2
SE_02_006700394 chr2:189208800-189220303 Sample_02_0067 Embryo AzH-G2/M 394 2 258 20 0 14 0 COL5A2
SE_02_023000319 chr2:189208840-189218492 Sample_02_0230 Umbilical cord ID60 319 8 219 17 0 14 0 COL5A2
SE_02_041400213 chr2:189209089-189222847 Sample_02_0414 Foreskin BJEL 213 4 306 21 0 22 0 COL5A2
SE_02_008900547 chr2:189209203-189222517 Sample_02_0089 Umbilical cord umbilical-cord-derived-mesenchymal-stem-cells_SGA_cycle_3 547 4 286 20 0 14 0 COL5A2
SE_02_006400844 chr2:189209285-189218918 Sample_02_0064 Embryo DN-Early_G1 844 2 218 15 0 14 0 COL5A2
SE_02_006600224 chr2:189209459-189219452 Sample_02_0066 Embryo AzL-S_phase 224 2 225 16 0 14 0 COL5A2
SE_02_022900460 chr2:189209591-189218465 Sample_02_0229 Umbilical cord ID01 460 9 204 15 0 14 0 COL5A2
SE_02_003800744 chr2:189209739-189219439 Sample_02_0038 Embryo DE 744 5 217 16 0 14 0 COL5A2

Genomic distribution of SEs associated with COL5A2

The strength of the tissue affected by the gene


Expression of COL5A2