SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000163814
Gene: CDCP1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:45082277-45146422 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_04_000100628 chr3:45040990-45108414 Sample_04_0001 Blood heat shocked K562 628 11 1837 195 10 55 983 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_098800010 chr3:45041022-45108432 Sample_02_0988 Blood K562_EPZ 10 34 1837 195 10 55 983 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_111600184 chr3:45041642-45107025 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 184 23 1778 189 9 55 983 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_054600044 chr3:45054173-45107280 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 44 16 1486 158 7 54 983 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_006800677 chr3:45056226-45107185 Sample_02_0068 Skin A375_DMSO 677 12 1414 155 7 52 983 CDCP1,CLEC3B
SE_02_142400207 chr3:45079598-45107029 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 207 7 719 57 5 48 983 CDCP1,CLEC3B,EXOSC7,ZDHHC3,TMEM158
SE_02_125900483 chr3:45081874-45107209 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 483 8 672 53 5 48 983 CDCP1,CLEC3B
SE_02_041900812 chr3:45081894-45107249 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 812 11 675 53 5 48 983 CDCP1
SE_02_063600545 chr3:45081973-45107926 Sample_02_0636 Skin BJ5ta 545 7 688 56 5 48 983 CDCP1
SE_02_126200600 chr3:45082580-45107247 Sample_02_1262 Bone Im-GCT-3504_G34W 600 4 657 53 5 48 912 CDCP1
SE_02_011300109 chr3:45083774-45107326 Sample_02_0113 Connective tissue HT1080_DOX5d 109 3 627 46 5 48 721 CDCP1
SE_00_002300439 chr3:45083889-45107941 Sample_00_0023 Embryo mesenchymal-stem-cell 439 4 638 48 5 48 702 CDCP1
SE_02_153400198 chr3:45084104-45107162 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 198 5 612 43 4 48 681 CDCP1,CLEC3B
SE_02_153500422 chr3:45084395-45107145 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 422 7 606 41 4 48 636 CDCP1,CLEC3B
SE_02_126100923 chr3:45084523-45107127 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 923 4 601 41 4 48 618 CDCP1,CLEC3B
SE_02_082400101 chr3:45084941-45106990 Sample_02_0824 Stomach LMSU 101 7 585 41 4 48 571 CDCP1
SE_02_021900172 chr3:45093271-45107139 Sample_02_0219 Mammary gland MDA-MB-231 172 4 346 22 3 24 185 CDCP1
SE_02_016100042 chr3:45153168-45181051 Sample_02_0161 Brain U87 42 6 938 208 8 11 0 CDCP1,TMEM158
SE_02_011200646 chr3:45153294-45184392 Sample_02_0112 Connective tissue HT1080_untreated 646 4 1040 222 8 11 0 CDCP1,TMEM158
SE_02_045100686 chr3:45153413-45183433 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 686 3 1011 218 8 11 0 CDCP1,TMEM158
SE_02_030500092 chr3:45153463-45227120 Sample_02_0305 Neuroblastoma SH-EP 92 7 2330 453 12 109 513 TMEM158,CDCP1
SE_02_132000058 chr3:45153476-45226319 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 58 15 2305 451 12 104 438 TMEM158,CDCP1
SE_02_015500053 chr3:45153641-45181507 Sample_02_0155 Brain U87_EGFRvIII_shSOX9_FBS 53 5 946 207 8 11 0 CDCP1,TMEM158
SE_02_015800398 chr3:45153659-45184330 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 398 4 1025 219 8 11 0 CDCP1,TMEM158
SE_02_132100065 chr3:45153863-45226303 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 65 17 2293 447 12 104 436 TMEM158,CDCP1
SE_02_015200041 chr3:45153947-45167605 Sample_02_0152 Brain U87_EGFRvIII_shFOXG1_FBS 41 5 411 76 0 6 0 CDCP1
SE_02_153400643 chr3:45153959-45170775 Sample_02_1534 Mammary gland MDA-MB-231_ER?WT_0min 643 3 509 97 2 11 0 CDCP1,TMEM158
SE_02_044800451 chr3:45154108-45184020 Sample_02_0448 Bone MNNG 451 10 1005 215 8 10 0 CDCP1,TMEM158
SE_02_126700552 chr3:45154166-45183747 Sample_02_1267 Bone Im-GCT-4072_G34W 552 5 998 214 8 9 0 CDCP1,TMEM158
SE_02_126800450 chr3:45154223-45183551 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 450 4 993 214 8 9 0 CDCP1,TMEM158
SE_02_126000696 chr3:45154248-45210644 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 696 13 1852 391 10 19 0 CDCP1,TMEM158
SE_02_097200760 chr3:45154356-45183910 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 760 4 996 212 8 9 0 CDCP1,TMEM158
SE_02_043700115 chr3:45154958-45219886 Sample_02_0437 Bone 143B 115 20 2111 424 12 30 0 CDCP1,TMEM158
SE_02_082600695 chr3:45157383-45210550 Sample_02_0826 Stomach gastric tumor 695 24 1746 364 10 15 0 CDCP1,TMEM158
SE_02_045300066 chr3:45163823-45227342 Sample_02_0453 Neuroblastoma SJNB3 66 7 2020 392 13 103 513 TMEM158,CDCP1
SE_01_011501113 chr3:45164264-45183554 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1113 7 687 152 8 5 0 CDCP1,TMEM158,EXOSC7
SE_02_085701276 chr3:45164824-45171695 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1276 1 218 39 3 5 0 CDCP1
SE_02_125801046 chr3:45164862-45184140 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 1046 3 680 152 8 5 0 CDCP1,TMEM158
SE_02_099100822 chr3:45164974-45183021 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 822 5 648 147 8 5 0 CDCP1,TMEM158
SE_02_070500671 chr3:45165245-45184318 Sample_02_0705 Pancreas AsPC1 WT 671 5 675 149 8 5 0 CDCP1,TMEM158
SE_02_050600256 chr3:45165306-45226762 Sample_02_0506 Esophagus TE5_1 256 19 1961 380 12 103 513 TMEM158,CDCP1
SE_02_103200647 chr3:45165385-45201636 Sample_02_1032 Head and neck SCC1 JQ1 647 10 1228 272 9 7 0 CDCP1,TMEM158
SE_02_051700258 chr3:45165395-45226762 Sample_02_0517 Esophagus TE5 258 18 1954 378 12 103 513 TMEM158,CDCP1
SE_02_127800530 chr3:45165472-45225902 Sample_02_1278 Chordoma UCH1_DMSO_48h 530 17 1934 377 12 84 315 TMEM158,CDCP1
SE_02_050500310 chr3:45165488-45226783 Sample_02_0505 Esophagus KYSE70_1 310 18 1952 378 12 103 513 TMEM158,CDCP1
SE_02_021100631 chr3:45165575-45192293 Sample_02_0211 Lung MRC-5_NFD_1DPT 631 7 904 189 9 6 0 CDCP1,TMEM158
SE_02_051600313 chr3:45165591-45226783 Sample_02_0516 Esophagus KYSE70 313 18 1944 378 12 103 513 TMEM158,CDCP1
SE_02_125900702 chr3:45165634-45205403 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 702 9 1319 297 9 10 0 CDCP1,TMEM158
SE_02_021000311 chr3:45165876-45225064 Sample_02_0210 Lung MRC-5_N_1DPT 311 9 1909 375 12 48 99 TMEM158,CDCP1
SE_02_005600876 chr3:45166231-45214666 Sample_02_0056 Mammary gland HMEC 876 11 1605 338 10 24 0 CDCP1,TMEM158
SE_02_044100757 chr3:45166239-45184147 Sample_02_0441 Bone M112 757 6 633 145 8 5 0 CDCP1,TMEM158
SE_02_058800783 chr3:45166248-45184313 Sample_02_0588 Cervix HeLa Kyoto_untreated 783 13 637 145 8 5 0 CDCP1,TMEM158,CLEC3B
SE_02_094100714 chr3:45166399-45184050 Sample_02_0941 Brain T98G 714 7 628 145 8 5 0 CDCP1,TMEM158
SE_02_047500603 chr3:45166437-45204991 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 603 7 1296 296 9 7 0 CDCP1,TMEM158
SE_02_059000501 chr3:45166492-45184500 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 501 11 638 145 8 5 0 CDCP1,TMEM158
SE_02_058900696 chr3:45166494-45184448 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 696 10 637 145 8 5 0 CDCP1,TMEM158
SE_02_150300572 chr3:45166507-45226244 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 572 14 1903 375 12 97 411 TMEM158,CDCP1
SE_02_150101063 chr3:45166576-45185915 Sample_02_1501 Brain SHEP-21N_NOSPIKE 1063 5 682 153 9 6 0 CDCP1,TMEM158
SE_01_009100354 chr3:45172446-45233758 Sample_01_0091 Uterus uterus 354 10 1922 357 9 117 513 TMEM158,CDCP1
SE_02_026000389 chr3:45191826-45226257 Sample_02_0260 Lung NCI-H1299_EGFP-NEO_reporter_cells_SB939 389 12 1041 192 3 91 414 TMEM158,CDCP1
Genomic distribution of SEs associated with CDCP1
Genome Browser

The strength of the tissue affected by the gene

Expression of CDCP1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)