SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000117091
Gene: CD48 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:160678746-160711831 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_111900577 chr1:160605408-160676216 Sample_02_1119 Blood KBM7 577 28 2037 182 6 134 772 SLAMF1,CD84,CD48
SE_02_022400126 chr1:160605774-160676650 Sample_02_0224 Haematopoietic and lymphoid tissue P12-ICHIKAWA 126 8 2040 181 6 134 772 SLAMF1,CD84,CD48
SE_02_038700091 chr1:160605999-160676179 Sample_02_0387 Lymph node CD19+_B_cells_nhl_FL1-2 91 18 2020 180 6 134 772 SLAMF1,CD84,CD48
SE_02_130400478 chr1:160606077-160675704 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 478 25 2002 180 6 134 772 SLAMF1,CD84,CD48
SE_02_018400041 chr1:160607466-160676794 Sample_02_0184 Skin SKMEL30 41 12 1997 178 6 134 772 SLAMF1,CD84,CD48
SE_02_133000789 chr1:160607721-160674346 Sample_02_1330 Blood AMU-AML1 789 14 1919 172 6 134 772 SLAMF1,CD84,CD48
SE_02_078400381 chr1:160620968-160675755 Sample_02_0784 Blood OSU-CLL 381 17 1581 119 6 111 551 SLAMF1,CD84,CD48
SE_02_036300051 chr1:160621855-160676557 Sample_02_0363 Haematopoietic and lymphoid tissue 697 51 9 1578 116 6 108 551 SLAMF1,CD84,CD48
SE_02_088500915 chr1:160622850-160676413 Sample_02_0885 Blood NALM6_2 915 9 1544 113 5 105 551 SLAMF1,CD84,CD48
SE_02_125000497 chr1:160622968-160675702 Sample_02_1250 Bone marrow RS4_11_AZD1775 _4h 497 15 1520 112 5 105 551 SLAMF1,CD84,CD48
SE_02_075700174 chr1:160628568-160675667 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 174 11 1377 105 5 83 506 SLAMF1,CD84,CD48
SE_02_004000582 chr1:160629178-160676425 Sample_02_0040 Embryo PFG 582 8 1380 105 5 82 506 SLAMF1,CD84,CD48,CD244
SE_02_075300760 chr1:160629191-160676245 Sample_02_0753 Embryo ES-derived progenitors_FG type 760 10 1374 104 5 82 506 SLAMF1,CD84,CD48
SE_02_105800443 chr1:160629471-160666743 Sample_02_1058 Bone A673_SA2 Rescue 443 15 1111 79 4 79 506 SLAMF1,CD84,CD48
SE_02_003601005 chr1:160650729-160675967 Sample_02_0036 Embryo H7 1005 5 695 62 3 27 0 SLAMF1,CD48,VANGL2
SE_02_056000134 chr1:160651053-160675751 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 134 12 675 61 3 27 0 SLAMF1,CD48,CD244
SE_02_117200770 chr1:160651055-160675624 Sample_02_1172 Embryo H9 WT 770 3 672 61 3 27 0 SLAMF1,CD48
SE_02_074200291 chr1:160651717-160675708 Sample_02_0742 Embryo ESCs_day0 291 6 655 60 3 27 0 SLAMF1,CD48
SE_02_046300190 chr1:160655420-160667129 Sample_02_0463 Blood OCI-AML3 cells 190 7 324 27 2 21 0 SLAMF1,CD48
SE_02_138900405 chr1:160655860-160679823 Sample_02_1389 Peripheral blood SUP-M2_ALK+ 405 5 667 57 3 24 84 CD48,SLAMF1
SE_00_002400599 chr1:160663446-160667630 Sample_00_0024 Embryo mesendoderm 599 1 119 6 0 11 0 SLAMF1,CD48,VANGL2
SE_02_003800525 chr1:160663784-160667934 Sample_02_0038 Embryo DE 525 1 120 6 0 11 0 SLAMF1,CD48,CD244
SE_02_004300559 chr1:160664405-160666530 Sample_02_0043 Embryo endodermal CyT49_ES_D2 559 1 66 6 0 11 0 SLAMF1,CD48
SE_02_139400537 chr1:160664706-160675377 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 537 6 292 27 1 6 0 SLAMF1,CD48
SE_02_003800190 chr1:160669645-160677492 Sample_02_0038 Embryo DE 190 1 210 20 1 0 0 SLAMF1,CD48,CD244
SE_02_067900515 chr1:160670072-160676434 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 515 8 164 17 1 0 0 SLAMF1,CD48,VANGL2
SE_02_003900868 chr1:160670474-160676609 Sample_02_0039 Embryo AFG 868 1 154 16 1 0 0 SLAMF1,CD48,ITLN1
SE_02_086100550 chr1:160670861-160674885 Sample_02_0861 iPSCs SAH_WT 550 3 91 8 1 0 0 SLAMF1,CD48
SE_02_004300285 chr1:160672995-160676675 Sample_02_0043 Embryo endodermal CyT49_ES_D2 285 1 95 8 1 0 0 SLAMF1,CD48
SE_02_124800201 chr1:160714250-160728858 Sample_02_1248 Bladder RT4 201 2 401 13 0 3 0 SLAMF7,CD48
SE_02_082600294 chr1:160725509-160836503 Sample_02_0826 Stomach gastric tumor 294 29 3290 287 17 130 2303 LY9,SLAMF7,CD244,ITLN1,CD48
SE_02_081700760 chr1:160725992-160746907 Sample_02_0817 Ovary Epithelial ovarian cancer 760 5 627 32 1 15 58 SLAMF7,LY9,CD48
SE_02_157300697 chr1:160726532-160768456 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 697 15 1243 74 7 46 685 SLAMF7,LY9,CD48
SE_02_149500225 chr1:160732489-160744016 Sample_02_1495 Other monocyte-derived dendritic cells_R848_1h 225 5 331 19 0 14 58 SLAMF7,CD48
SE_00_000900404 chr1:160732975-160768827 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 404 7 1067 69 7 45 685 SLAMF7,CD48,LY9
SE_00_002700350 chr1:160733384-160768844 Sample_00_0027 Blood natural-killer-cell 350 6 1058 67 7 45 685 SLAMF7,CD48,LY9
SE_02_032100618 chr1:160738017-160755025 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 618 1 508 31 4 32 685 SLAMF7,CD48,LY9
SE_02_032000752 chr1:160738239-160747676 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 752 1 295 17 1 9 58 SLAMF7,CD48,LY9
SE_02_142901179 chr1:160739271-160748417 Sample_02_1429 Blood GM12878_WT 1179 1 284 19 1 9 108 SLAMF7,LY9,CD48,SLAMF1
SE_02_002300530 chr1:160741587-160768437 Sample_02_0023 Blood CD8donorC 530 12 808 54 7 32 627 SLAMF7,CD48,LY9
SE_02_010500714 chr1:160747026-160782997 Sample_02_0105 Skin neonatal_keratinocytes 714 5 1042 70 11 44 627 SLAMF7,CD48,LY9
Genomic distribution of SEs associated with CD48
Genome Browser

The strength of the tissue affected by the gene

Expression of CD48

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)