SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000139537
Gene: CCDC65 Gene type: protein_coding
Strand: + External links:
Genomic region: chr12:48904110-48931840 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104900563 chr12:48810490-48861233 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 563 33 1250 81 2 407 3357 DDX23,RND1,CACNB3,LOC100506125,ADCY6,CCDC65,MIR4701
SE_02_104701723 chr12:48820340-48861481 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1723 14 1044 67 2 259 2719 DDX23,RND1,CACNB3,LOC100506125,ADCY6,CCDC65,MIR4701
SE_01_001200639 chr12:48849868-48891547 Sample_01_0012 Lung A549_dexamethasone_1h 639 5 1028 118 6 135 746 RND1,DDX23,FKBP11,CCDC65,CACNB3
SE_04_001000590 chr12:48856421-48902350 Sample_04_0010 Lung A549 TGFb 590 9 1125 133 7 119 626 RND1,FKBP11,DDX23,CACNB3,CCDC65
SE_02_085300232 chr12:48857391-48891022 Sample_02_0853 Mammary gland MCF7L-TamR 232 17 855 102 6 102 552 RND1,FKBP11,DDX23,CACNB3,CCDC65
SE_02_151400172 chr12:48859398-48888187 Sample_02_1514 Lung Differentiated AT1-like cells 172 10 726 94 6 87 346 RND1,FKBP11,DDX23,CACNB3,CCDC65
SE_02_151100220 chr12:48860680-48890765 Sample_02_1511 Lung H3122_untreated 220 9 763 97 6 89 346 RND1,FKBP11,DDX23,CACNB3,CCDC65
SE_02_020700122 chr12:48864157-48890835 Sample_02_0207 Stomach FU97 122 7 662 88 6 59 197 RND1,FKBP11,CCDC65,DDX23,CACNB3
SE_02_075700253 chr12:48865131-48891020 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 253 7 650 86 6 55 120 RND1,FKBP11,DDX23,CACNB3,CCDC65
SE_02_075400516 chr12:48865911-48891105 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 516 4 635 85 6 46 25 FKBP11,RND1,CACNB3,CCDC65,DDX23
SE_02_047600501 chr12:48867273-48885387 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 501 5 466 64 6 34 0 FKBP11,RND1,CACNB3,CCDC65,DDX23
SE_02_004800307 chr12:48867507-48891471 Sample_02_0048 Embryo endodermal CyT49_HE 307 6 594 80 6 38 0 FKBP11,CCDC65,DDX23,RND1,CACNB3
SE_02_004500230 chr12:48868162-48891314 Sample_02_0045 Embryo endodermal CyT49_ES_D7 230 4 574 78 6 37 0 FKBP11,CCDC65,DDX23,RND1,CACNB3
SE_02_081601470 chr12:48868168-48918810 Sample_02_0816 Ovary Clear cell ovarian cancer 1470 21 1229 173 8 63 424 CCDC65,FKBP11,RND1,CACNB3,DDX23,ARF3
SE_02_074400478 chr12:48868360-48884751 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 478 3 420 59 6 28 0 FKBP11,RND1,CACNB3,CCDC65,DDX23
SE_02_074501022 chr12:48868475-48891173 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1022 3 563 78 6 35 0 DDX23,FKBP11,RND1,CCDC65
SE_02_055700799 chr12:48880115-48885466 Sample_02_0557 iPSCs WT hiPSC#1 799 2 115 17 0 27 0 DDX23,CCDC65,RND1,FKBP11
SE_02_052500285 chr12:48880558-48891308 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 285 3 235 31 0 30 0 DDX23,CCDC65,RND1,FKBP11
SE_02_052400285 chr12:48880653-48891409 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 285 3 235 31 0 31 0 DDX23,CCDC65,RND1,FKBP11
SE_02_004000236 chr12:48880940-48891680 Sample_02_0040 Embryo PFG 236 2 240 34 0 32 0 CCDC65,FKBP11,DDX23,RND1
SE_01_009500535 chr12:48880994-48891321 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 535 2 230 31 0 30 0 DDX23,CCDC65,RND1,FKBP11
SE_02_049300711 chr12:48881217-48884893 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 711 1 83 12 0 21 0 DDX23,CCDC65,RND1,FKBP11
SE_02_151300922 chr12:48881357-48888212 Sample_02_1513 Lung Transitional AT2->1 cells 922 2 146 25 0 27 0 DDX23,CCDC65,RND1,FKBP11
SE_02_004900571 chr12:48881396-48885374 Sample_02_0049 Embryo endodermal CyT49_GTtoH 571 1 89 14 0 27 0 CCDC65,FKBP11,DDX23,RND1
SE_02_049401189 chr12:48881497-48884977 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1189 1 79 12 0 27 0 DDX23,CCDC65,RND1,FKBP11
SE_02_033000700 chr12:48881640-48887693 Sample_02_0330 Endoderm MHG 700 2 132 23 0 27 0 CCDC65,FKBP11,DDX23,RND1
SE_02_004600600 chr12:48881714-48884917 Sample_02_0046 Embryo endodermal CyT49_ES_D10 600 1 75 11 0 21 0 CCDC65,FKBP11,DDX23,RND1
SE_00_001000340 chr12:48881738-48884989 Sample_00_0010 Embryo endodermal-cell 340 1 75 11 0 27 0 CCDC65,FKBP11,DDX23,RND1
SE_02_003900893 chr12:48881751-48885005 Sample_02_0039 Embryo AFG 893 1 75 11 0 27 0 CCDC65,FKBP11,DDX23,RND1
SE_02_049500967 chr12:48881791-48884719 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 967 1 70 10 0 21 0 DDX23,CCDC65,RND1,FKBP11
SE_02_045400520 chr12:48916837-48936511 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 520 8 487 71 1 80 1079 FKBP11,ARF3,CCDC65,WNT10B,WNT1
SE_02_045600559 chr12:48917065-48937439 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 559 6 499 67 1 80 1225 FKBP11,ARF3,CCDC65,WNT10B,WNT1
SE_02_122400769 chr12:48918009-48947013 Sample_02_1224 Bone marrow normal plasma cell 769 9 686 94 1 133 1772 FKBP11,ARF3,CCDC65,WNT10B,WNT1
SE_02_045500605 chr12:48918047-48936411 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 605 3 453 63 1 70 1006 FKBP11,ARF3,CCDC65,WNT10B,WNT1
SE_02_082700518 chr12:48921113-48945279 Sample_02_0827 Stomach normal gastric 518 4 581 78 1 125 1585 FKBP11,ARF3,CCDC65,WNT10B,WNT1
SE_02_062200373 chr12:48937120-48975355 Sample_02_0622 Blood EOL1_Naive 373 15 926 127 0 340 1568 ARF3,WNT10B,FKBP11,WNT1,DDN,PRKAG1,CCDC65
SE_02_025600854 chr12:48952919-48974861 Sample_02_0256 Peripheral blood MV411 854 3 512 62 0 277 917 ARF3,WNT10B,DDN,PRKAG1,FKBP11,CCDC65,WNT1
Genomic distribution of SEs associated with CCDC65
Genome Browser

The strength of the tissue affected by the gene

Expression of CCDC65

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)