SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000243715
Gene: CACNA2D3-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr3:54874605-54901255 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_058000620 chr3:54850452-54871697 Sample_02_0580 Blood HEL_sgSIK3e4 620 8 790 20 3 98 52 CACNA2D3,CACNA2D3-AS1
SE_02_057900402 chr3:54853458-54871563 Sample_02_0579 Blood HEL_sgNeg2 402 10 673 19 2 84 33 CACNA2D3,CACNA2D3-AS1
SE_02_056900575 chr3:54940334-55006776 Sample_02_0569 Periodontal ligament mesenchymal stem cell 575 23 2022 49 9 241 217 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_076201251 chr3:54940342-54971125 Sample_02_0762 Podocyte podocyte_CTL 1251 5 883 24 3 162 83 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_060500377 chr3:54940404-54971503 Sample_02_0605 Skin Skin Fibroblast_DMSO 377 8 886 24 3 163 83 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_058000959 chr3:54943693-55012222 Sample_02_0580 Blood HEL_sgSIK3e4 959 19 2095 58 9 275 274 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_057600825 chr3:54943782-55012720 Sample_02_0576 Blood HEL_sgLKB1e2 825 28 2102 58 9 275 274 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_093001021 chr3:54944127-54956473 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 1021 10 380 5 2 42 0 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_143400180 chr3:54944967-55001986 Sample_02_1434 Trophoblast trophoblast stem cells 180 8 1718 45 8 201 169 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_076300879 chr3:54949773-54970374 Sample_02_0763 Podocyte podocyte_DEX 879 2 587 22 3 110 83 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_127901663 chr3:54949891-54972212 Sample_02_1279 Bone Mesenchymal stem cells 1663 9 625 24 3 114 83 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_113700553 chr3:54950474-54971609 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 553 7 586 22 2 104 83 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_113801024 chr3:54950629-54971471 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 1024 10 573 22 2 103 83 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_060600401 chr3:54950658-54971100 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 401 9 568 22 2 100 83 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_049901322 chr3:54950730-54971101 Sample_02_0499 Fetal lung IMR90 IR Senescence 1322 10 564 22 2 100 83 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_152700494 chr3:54950736-54956437 Sample_02_1527 Embryo naive embryonic stem cell 494 4 183 4 1 17 0 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_143500106 chr3:54950758-55001919 Sample_02_1435 Trophoblast trophoblast stem cells_MSX2_KD 106 6 1542 44 7 176 169 LRTM1,CACNA2D3,CACNA2D3-AS1
SE_02_049800560 chr3:54950786-54969869 Sample_02_0498 Fetal lung IMR90 Senescent_1 560 10 540 22 2 98 59 LRTM1,CACNA2D3,CACNA2D3-AS1
Genomic distribution of SEs associated with CACNA2D3-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of CACNA2D3-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)