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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000160325
Gene: CACFD1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr9:133459965-133470848 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104901275 chr9:133400383-133429016 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1275 10 945 158 5 77 2524 REXO4,ADAMTS13,STKLD1,SURF2,SURF1,SURF4,SNORD36A,CACFD1,SNORD36C
SE_02_103200596 chr9:133419644-133453647 Sample_02_1032 Head and neck SCC1 JQ1 596 9 1057 132 3 116 2604 ADAMTS13,REXO4,SURF4,STKLD1,CACFD1,SLC2A6
SE_02_077500486 chr9:133419956-133464195 Sample_02_0775 Pancreas EndoC-BH1_SE 486 11 1374 158 6 166 3900 ADAMTS13,CACFD1,REXO4,SURF4,STKLD1,SLC2A6
SE_02_102900913 chr9:133423467-133493893 Sample_02_1029 Colon HCT116 913 24 2252 230 7 257 5992 ADAMTS13,CACFD1,SLC2A6,REXO4,ADAMTSL2,SURF4,STKLD1,TMEM8C
SE_02_087200353 chr9:133423656-133456898 Sample_02_0872 Colon HCT116_siCtrl-5FU 353 9 1058 127 3 119 2866 ADAMTS13,REXO4,SURF4,STKLD1,CACFD1,SLC2A6
SE_02_124400456 chr9:133448571-133472567 Sample_02_1244 Brain KCNR_ATRA 456 6 780 71 4 94 2682 ADAMTS13,CACFD1,SLC2A6,REXO4
SE_02_108300987 chr9:133458670-133477816 Sample_02_1083 Macula macula 987 7 633 60 3 90 2480 ADAMTS13,CACFD1,SLC2A6,REXO4,TMEM8C
SE_02_123700489 chr9:133459738-133464015 Sample_02_1237 Skin MKL2_virus_positive 489 1 123 12 2 18 281 CACFD1,REXO4,ADAMTS13,SLC2A6
SE_02_123900212 chr9:133459749-133465532 Sample_02_1239 Skin Waga_virus_positive 212 1 182 15 2 22 365 CACFD1,REXO4,ADAMTS13,SLC2A6
SE_02_104901954 chr9:133462022-133486472 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1954 9 794 61 2 99 2461 CACFD1,SLC2A6,REXO4,ADAMTS13,ADAMTSL2,TMEM8C
SE_02_055300305 chr9:133462337-133528405 Sample_02_0553 Other HSSY2 shCt 305 15 2216 163 3 232 3048 CACFD1,TMEM8C,SLC2A6,REXO4,ADAMTS13,ADAMTSL2
SE_02_107100315 chr9:133468468-133486349 Sample_02_1071 Blood Jurkat_WT 315 6 587 42 1 78 2091 CACFD1,SLC2A6,TMEM8C,ADAMTSL2,ADAMTS13
SE_02_110400650 chr9:133470494-133529023 Sample_02_1104 Brain NB-69 650 16 1979 141 1 211 2169 CACFD1,TMEM8C,SLC2A6,ADAMTSL2,ADAMTS13
SE_02_064300788 chr9:133475067-133479136 Sample_02_0643 Mammary gland MDA-MB-436 788 3 131 11 0 38 716 SLC2A6,CACFD1,TMEM8C
SE_02_064200723 chr9:133475354-133479924 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 723 1 133 11 0 39 712 SLC2A6,CACFD1,TMEM8C
SE_02_077500957 chr9:133481102-133528124 Sample_02_0775 Pancreas EndoC-BH1_SE 957 21 1594 110 1 144 587 TMEM8C,CACFD1,ADAMTSL2,SLC2A6
SE_02_124400204 chr9:133485804-133522338 Sample_02_1244 Brain KCNR_ATRA 204 10 1273 92 1 94 457 TMEM8C,CACFD1,ADAMTSL2,SLC2A6
SE_02_155400604 chr9:133487454-133528770 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 604 9 1412 101 1 133 587 TMEM8C,CACFD1,ADAMTSL2,SLC2A6
SE_02_156001403 chr9:133487896-133529500 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1403 6 1430 100 1 138 587 TMEM8C,CACFD1,ADAMTSL2,SLC2A6
SE_02_108000957 chr9:133491825-133529576 Sample_02_1080 Muscle JR1 shCtrl 957 8 1312 87 1 131 587 TMEM8C,CACFD1,ADAMTSL2,SLC2A6
SE_02_101600475 chr9:133492202-133540711 Sample_02_1016 Embryo H9_Mesendoderm_24h 475 9 1738 107 1 198 1453 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_153900427 chr9:133492625-133529649 Sample_02_1539 Nasopharyngeal C666-1 427 12 1293 84 1 125 587 TMEM8C,CACFD1,ADAMTSL2,SLC2A6
SE_02_104301045 chr9:133506816-133540469 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1045 8 1215 66 0 159 1409 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_120300184 chr9:133507358-133575558 Sample_02_1203 Brain NB1 184 24 1677 179 0 335 3546 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_101300203 chr9:133508051-133539980 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 203 14 1145 65 0 151 1381 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_121300454 chr9:133508916-133577686 Sample_02_1213 Brain GBM31 454 21 1632 187 0 336 3592 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_068600417 chr9:133508986-133537254 Sample_02_0686 Lung NCI-H128_no infection 417 9 958 60 0 128 1016 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_120501323 chr9:133508990-133540345 Sample_02_1205 Brain NB3 1323 9 1137 64 0 159 1403 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_117300477 chr9:133508990-133540994 Sample_02_1173 Brain GBM01 477 12 1170 64 0 186 1517 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_119600405 chr9:133509023-133574403 Sample_02_1196 Brain GBM32 405 25 1613 175 0 323 3280 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_118100833 chr9:133509060-133558187 Sample_02_1181 Brain GBM10 833 8 1610 138 0 227 2143 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_100900110 chr9:133509061-133539925 Sample_02_1009 Brain Lateral temporal lobe_2T_AD 110 12 1114 64 0 151 1363 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_096900805 chr9:133509092-133539113 Sample_02_0969 Brain H3.3K27M_PL637 805 8 1044 63 0 146 1274 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_119400815 chr9:133509102-133573564 Sample_02_1194 Brain GBM28 815 17 1613 173 0 316 3135 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_155900096 chr9:133509103-133577291 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 96 13 1628 182 0 336 3592 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_107900144 chr9:133509388-133540820 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 144 5 1148 63 0 168 1472 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_100600092 chr9:133509649-133539808 Sample_02_1006 Brain Lateral temporal lobe_13T_Old 92 5 1088 63 0 143 1334 ADAMTSL2,TMEM8C,FAM163B,CACFD1,SLC2A6
SE_02_100000302 chr9:133509710-133528060 Sample_02_1000 Brain Lateral temporal lobe_15T_Young 302 8 631 40 0 85 587 TMEM8C,CACFD1,ADAMTSL2,SLC2A6
Genomic distribution of SEs associated with CACFD1
Genome Browser

The strength of the tissue affected by the gene

Expression of CACFD1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)