SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000184809
Gene: B3GALT5-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr21:39597147-39612910 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_080100195 chr21:39555507-39565197 Sample_02_0801 Brain 2235 195 2 271 33 0 7 52 B3GALT5-AS1,B3GALT5
SE_02_123600345 chr21:39613177-39644896 Sample_02_1236 Skin MKL1_virus_positive 345 10 802 58 2 9 166 B3GALT5,B3GALT5-AS1
SE_02_125800355 chr21:39614538-39661513 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 355 8 1248 94 10 35 566 B3GALT5,B3GALT5-AS1
SE_02_074000103 chr21:39614689-39690824 Sample_02_0740 Muscle RH3 103 19 2074 141 19 45 781 B3GALT5,B3GALT5-AS1
SE_02_072400290 chr21:39614895-39644195 Sample_02_0724 Pancreatic duct AsPC1_GFP_DOX 290 13 739 53 1 8 161 B3GALT5,B3GALT5-AS1
SE_02_129400149 chr21:39614968-39644281 Sample_02_1294 Lung JHU-LX44-SCLC PDX 149 10 736 53 1 8 161 B3GALT5,B3GALT5-AS1
SE_02_070900226 chr21:39614975-39661249 Sample_02_0709 Pancreas hT85_organoid 226 17 1224 94 10 31 520 B3GALT5,B3GALT5-AS1
SE_02_072100202 chr21:39615078-39660593 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 202 19 1198 92 9 9 422 B3GALT5,B3GALT5-AS1
SE_02_151100153 chr21:39615549-39688395 Sample_02_1511 Lung H3122_untreated 153 23 1996 136 19 44 713 B3GALT5,B3GALT5-AS1
SE_02_152400524 chr21:39616027-39639491 Sample_02_1524 Lung H3122 DMSO 524 8 559 44 1 7 59 B3GALT5,B3GALT5-AS1
SE_02_070400180 chr21:39616075-39637784 Sample_02_0704 Pancreas HPAFII WT 180 16 495 39 1 7 59 B3GALT5,B3GALT5-AS1
SE_02_047700320 chr21:39616106-39688473 Sample_02_0477 Colon intestinal epithelial organoids_139a 320 23 1983 135 19 44 713 B3GALT5,B3GALT5-AS1
SE_02_071600342 chr21:39616211-39644138 Sample_02_0716 Pancreas SUIT2_GFP 342 15 704 51 1 7 93 B3GALT5,B3GALT5-AS1,IGSF5
SE_02_071900643 chr21:39616518-39639207 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 643 10 539 43 1 7 59 B3GALT5,B3GALT5-AS1,IGSF5
SE_02_088601885 chr21:39618805-39671430 Sample_02_0886 Skin foreskin_ p63KLF4 1885 10 1439 98 13 39 713 B3GALT5,B3GALT5-AS1
SE_02_072000340 chr21:39618872-39639186 Sample_02_0720 Pancreas AsPC1_TP63dN_DOX 340 13 481 37 1 7 59 B3GALT5,B3GALT5-AS1
SE_00_004900606 chr21:39620878-39653777 Sample_00_0049 Small intestine small intestine 30y 606 10 880 66 6 8 153 B3GALT5,B3GALT5-AS1
SE_02_071400247 chr21:39621385-39641504 Sample_02_0714 Pancreas SUIT2_MTV 247 12 517 38 1 7 59 B3GALT5,B3GALT5-AS1,IGSF5
SE_02_070600259 chr21:39624307-39639317 Sample_02_0706 Pancreas SUIT2 WT 259 15 395 29 1 7 59 B3GALT5,B3GALT5-AS1,IGSF5
SE_02_048101326 chr21:39627935-39662111 Sample_02_0481 Mammary gland MDA-MB231 1326 9 998 74 10 36 598 B3GALT5,B3GALT5-AS1
SE_02_122800664 chr21:39628291-39661109 Sample_02_1228 Mammary gland MDA-MB-231_2 664 9 946 71 10 24 432 B3GALT5,B3GALT5-AS1
SE_02_132100376 chr21:39628667-39661533 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 376 10 949 69 10 36 501 B3GALT5,B3GALT5-AS1
SE_02_158000341 chr21:39628898-39676956 Sample_02_1580 Renal 786-O 341 17 1403 90 14 44 713 B3GALT5,B3GALT5-AS1
SE_02_157900589 chr21:39628920-39662190 Sample_02_1579 Renal 786-M1A 589 7 974 71 10 36 609 B3GALT5,B3GALT5-AS1
SE_02_113701426 chr21:39628947-39661376 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1426 8 933 69 10 31 472 B3GALT5,B3GALT5-AS1,WRB
SE_02_043700316 chr21:39629035-39661006 Sample_02_0437 Bone 143B 316 18 921 68 10 20 427 B3GALT5,B3GALT5-AS1
SE_02_076300992 chr21:39629091-39683063 Sample_02_0763 Podocyte podocyte_DEX 992 8 1580 102 15 44 713 B3GALT5,B3GALT5-AS1
SE_02_045100748 chr21:39629136-39661425 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 748 6 930 68 10 34 478 B3GALT5,B3GALT5-AS1
SE_02_127901092 chr21:39629303-39661450 Sample_02_1279 Bone Mesenchymal stem cells 1092 9 925 67 10 34 484 B3GALT5,B3GALT5-AS1
SE_02_132001118 chr21:39630110-39661584 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1118 7 916 66 10 34 514 B3GALT5,B3GALT5-AS1
SE_01_010100506 chr21:39630161-39696668 Sample_01_0101 Pancreas pancreas_54y 506 17 1902 117 19 42 707 B3GALT5,IGSF5,B3GALT5-AS1
SE_02_074100410 chr21:39630215-39677109 Sample_02_0741 Muscle RH30 410 15 1376 89 14 40 704 B3GALT5,B3GALT5-AS1
SE_02_108000384 chr21:39630239-39677117 Sample_02_1080 Muscle JR1 shCtrl 384 18 1376 89 14 40 703 B3GALT5,B3GALT5-AS1
SE_02_127200837 chr21:39630476-39647270 Sample_02_1272 Leiomyosarcoma SK-LMS-1_HDAC4KO 837 7 507 36 2 1 113 B3GALT5,B3GALT5-AS1
SE_02_101501020 chr21:39632728-39675180 Sample_02_1015 Embryo H9_ Undifferentiated 1020 16 1262 79 12 38 654 B3GALT5,B3GALT5-AS1
SE_02_074900551 chr21:39632857-39682594 Sample_02_0749 Mammary gland HCC1599_GSI 551 14 1488 96 14 38 654 B3GALT5,B3GALT5-AS1
SE_02_074800357 chr21:39633396-39682633 Sample_02_0748 Mammary gland HCC1599_WO 357 13 1476 96 14 38 654 B3GALT5,B3GALT5-AS1
SE_02_107800450 chr21:39636281-39677107 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 450 14 1221 82 13 37 654 B3GALT5,B3GALT5-AS1
SE_00_005301047 chr21:39650953-39677085 Sample_00_0053 Embryo trophoblast cell originated from H1 1047 9 761 45 9 37 560 B3GALT5,B3GALT5-AS1
SE_02_123600112 chr21:39658839-39677917 Sample_02_1236 Skin MKL1_virus_positive 112 6 572 30 7 36 421 B3GALT5,B3GALT5-AS1
SE_02_123700206 chr21:39659034-39677840 Sample_02_1237 Skin MKL2_virus_positive 206 4 561 28 7 36 421 B3GALT5,B3GALT5-AS1
SE_02_110500882 chr21:39659546-39679488 Sample_02_1105 Brain NBL-S 882 15 594 31 7 36 421 B3GALT5,B3GALT5-AS1
SE_02_129400117 chr21:39659804-39687509 Sample_02_1294 Lung JHU-LX44-SCLC PDX 117 7 808 45 10 36 395 B3GALT5,B3GALT5-AS1
SE_02_123800170 chr21:39659860-39677911 Sample_02_1238 Skin MS1_virus_positive 170 5 547 27 6 36 392 B3GALT5,B3GALT5-AS1
SE_02_128200013 chr21:39659864-39697164 Sample_02_1282 Lung NCI-H1092_p8-15 13 11 1060 54 10 36 392 B3GALT5,IGSF5,B3GALT5-AS1
SE_02_077600377 chr21:39659898-39715734 Sample_02_0776 Pancreas EndoC-BH1 377 11 1580 91 10 36 389 B3GALT5,IGSF5,B3GALT5-AS1
SE_02_052300321 chr21:39660493-39697047 Sample_02_0523 Lung NCIH810 321 10 1046 54 10 35 357 B3GALT5,IGSF5,B3GALT5-AS1
Genomic distribution of SEs associated with B3GALT5-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of B3GALT5-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)