SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000078061
Gene: ARAF Gene type: protein_coding
Strand: + External links:
Genomic region: chrX:47561100-47571920 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_044600122 chrX:47462245-47557452 Sample_02_0446 Bone osteosarcoma tumor P2 122 32 1752 99 4 46 374 ZNF41,LINC01560,MIR4769,TIMP1,ARAF
SE_02_044700331 chrX:47474656-47524209 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 331 16 877 60 3 28 231 ZNF41,LINC01560,ARAF
SE_02_044100413 chrX:47478427-47524286 Sample_02_0441 Bone M112 413 13 795 56 3 28 231 ZNF41,LINC01560,ARAF
SE_02_043900219 chrX:47478581-47524148 Sample_02_0439 Bone Hu09 219 13 790 56 3 28 231 ZNF41,LINC01560,ARAF
SE_02_106100677 chrX:47479433-47524302 Sample_02_1061 Bone TC71_WT 677 7 773 55 3 28 231 ZNF41,LINC01560,ARAF
SE_02_148800681 chrX:47479433-47524302 Sample_02_1488 Bone TC-71 681 8 773 55 3 28 231 ZNF41,LINC01560,ARAF
SE_02_045300470 chrX:47481200-47524530 Sample_02_0453 Neuroblastoma SJNB3 470 8 743 52 3 29 231 ZNF41,LINC01560,ARAF
SE_02_086300295 chrX:47481524-47524262 Sample_02_0863 Malignant rhaboid tumor TTC1240_empty 295 14 735 51 3 28 231 ZNF41,LINC01560,ARAF
SE_02_017700538 chrX:47481754-47524473 Sample_02_0177 Urinary bladder J82 538 4 735 51 3 28 231 ZNF41,ARAF
SE_02_086500393 chrX:47481839-47524059 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 393 9 731 51 3 28 231 ZNF41,LINC01560,ARAF
SE_02_086600511 chrX:47481841-47517158 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 511 8 581 43 1 14 231 ZNF41,LINC01560,ARAF
SE_02_135400283 chrX:47481841-47524136 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 283 8 732 51 3 28 231 ZNF41,LINC01560,ARAF
SE_02_127800520 chrX:47481843-47524263 Sample_02_1278 Chordoma UCH1_DMSO_48h 520 9 733 51 3 28 231 ZNF41,LINC01560,ARAF
SE_02_135100114 chrX:47481881-47524114 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 114 7 732 51 3 28 231 ZNF41,LINC01560,ARAF
SE_02_015000304 chrX:47481882-47524456 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 304 4 735 51 3 28 231 ZNF41,ARAF
SE_02_078000460 chrX:47481889-47524775 Sample_02_0780 Liver SMMC-7721 460 17 738 51 3 30 231 ZNF41,LINC01560,ARAF
SE_02_135300109 chrX:47481894-47524130 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 109 7 731 51 3 28 231 ZNF41,LINC01560,ARAF
SE_02_040200258 chrX:47481965-47524285 Sample_02_0402 Mammary gland SUM159PT-ZR-75-1 258 4 731 51 3 28 231 ZNF41,ARAF
SE_02_135200206 chrX:47482036-47524082 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 206 7 729 51 3 28 231 ZNF41,LINC01560,ARAF
SE_02_040100238 chrX:47482063-47524360 Sample_02_0401 Mammary gland SUM159PT-T47D 238 6 733 51 3 28 231 ZNF41,ARAF
SE_02_039900372 chrX:47482169-47524258 Sample_02_0399 Mammary gland SUM159PT-BT-474 372 6 729 51 3 28 231 ZNF41,ARAF
SE_02_081500070 chrX:47482239-47524225 Sample_02_0815 Mammary gland SUM159PT 70 9 727 51 3 28 231 ZNF41,LINC01560,ARAF
SE_02_008400217 chrX:47482312-47524148 Sample_02_0084 Oral cavity KB_5Z-7-oxozeaenol 217 5 726 51 3 28 220 ZNF41,ARAF
SE_02_102100050 chrX:47482662-47524065 Sample_02_1021 Mammary gland SUM159R 50 9 717 50 3 26 174 ZNF41,LINC01560,ARAF
SE_02_086400389 chrX:47482673-47524192 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 389 9 719 50 3 26 172 ZNF41,LINC01560,ARAF
SE_02_124200237 chrX:47484753-47524119 Sample_02_1242 Skin UISO_virus_negative 237 13 691 49 3 20 0 LINC01560,ZNF41,ARAF
SE_02_058600665 chrX:47484753-47524198 Sample_02_0586 Chordal patient-derived chordoma MGH_4 665 14 692 49 3 20 0 LINC01560,ZNF41,ARAF
SE_02_086200423 chrX:47484798-47524144 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 423 15 691 49 3 20 0 LINC01560,ZNF41,ARAF
SE_02_108000865 chrX:47485344-47516999 Sample_02_1080 Muscle JR1 shCtrl 865 9 532 41 1 6 0 ZNF41,LINC01560,ARAF
SE_02_058800304 chrX:47497090-47523194 Sample_02_0588 Cervix HeLa Kyoto_untreated 304 11 457 40 2 17 0 ZNF41,LINC01560,ARAF
SE_02_102000100 chrX:47497370-47524093 Sample_02_1020 Mammary gland SUM159 100 4 474 40 2 20 0 ZNF41,LINC01560,ARAF
SE_02_059000645 chrX:47497484-47516713 Sample_02_0590 Cervix HeLa Kyoto_Luci PWWP2A siRNA 645 11 311 32 0 5 0 ZNF41,LINC01560,ARAF
SE_02_058900788 chrX:47497523-47516800 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 788 11 316 32 0 5 0 ZNF41,LINC01560,ARAF
SE_02_139400229 chrX:47498260-47524467 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 229 5 465 40 2 19 0 ZNF41,LINC01560,ARAF
SE_01_003600351 chrX:47498729-47521840 Sample_01_0036 Cervix HeLa-S3 351 3 417 37 1 16 0 ZNF41,ARAF,CXorf24,TIP1
SE_02_111500900 chrX:47501835-47519611 Sample_02_1115 Liver HepG2 900 4 315 29 1 16 0 ZNF41,LINC01560,ARAF
SE_02_111300946 chrX:47501909-47524092 Sample_02_1113 Bone U2OS 946 5 402 33 2 19 0 ZNF41,LINC01560,ARAF
SE_02_106000723 chrX:47595718-47624446 Sample_02_1060 Bone TC71_SA2 KO 723 16 554 41 1 144 467 SYN1,CFP,UXT-AS1,TIMP1,MIR4769,ELK1,ARAF,UXT
SE_02_148400329 chrX:47605382-47611061 Sample_02_1484 Bone Rh1 329 4 121 6 1 13 112 SYN1,UXT-AS1,TIMP1,MIR4769,CFP,ELK1,ARAF,UXT
Genomic distribution of SEs associated with ARAF
Genome Browser

The strength of the tissue affected by the gene

Expression of ARAF

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)