SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000100298
Gene: APOBEC3H Gene type: protein_coding
Strand: + External links:
Genomic region: chr22:39097224-39104067 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_003200315 chr22:38980621-39048414 Sample_02_0032 Pancreas pancreatic-islets-M 315 14 2468 242 1 35 3129 APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3B,APOBEC3A,APOBEC3G,APOBEC3H
SE_02_013100252 chr22:38980642-39048506 Sample_02_0131 Lung 1015_PT 252 16 2473 242 1 35 3129 APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3B,APOBEC3A,APOBEC3G,APOBEC3H
SE_02_003600274 chr22:38981381-39053111 Sample_02_0036 Embryo H7 274 13 2632 268 1 42 3458 APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3B,APOBEC3A,APOBEC3G,APOBEC3H
SE_02_003800733 chr22:38981628-39053113 Sample_02_0038 Embryo DE 733 14 2627 267 1 42 3458 APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3B,APOBEC3A,APOBEC3G,APOBEC3H
SE_02_013200557 chr22:39010426-39048697 Sample_02_0132 Lung 1015_CL 557 6 1455 130 0 24 2263 APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3G,APOBEC3B,APOBEC3H
SE_02_101701275 chr22:39016529-39052969 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1275 9 1372 124 0 29 2362 APOBEC3F,APOBEC3D,APOBEC3C,APOBEC3H,APOBEC3G,APOBEC3B
SE_02_157000922 chr22:39016621-39053137 Sample_02_1570 iPSCs EiPSC 922 8 1377 127 0 29 2388 APOBEC3F,APOBEC3D,APOBEC3C,APOBEC3H,APOBEC3G,APOBEC3B
SE_02_157200764 chr22:39016639-39052960 Sample_02_1572 iPSCs FiPSC 764 9 1367 124 0 29 2360 APOBEC3F,APOBEC3D,APOBEC3C,APOBEC3H,APOBEC3G,APOBEC3B
SE_02_101500593 chr22:39016642-39052879 Sample_02_1015 Embryo H9_ Undifferentiated 593 9 1366 124 0 29 2343 APOBEC3F,APOBEC3D,APOBEC3C,APOBEC3H,APOBEC3G,APOBEC3B
SE_02_006400445 chr22:39017012-39053042 Sample_02_0064 Embryo DN-Early_G1 445 5 1352 126 0 29 2374 APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3G,APOBEC3B,APOBEC3H
SE_02_012400464 chr22:39017021-39076917 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 464 8 2126 176 0 35 2843 APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3G,APOBEC3B,APOBEC3H
SE_02_001700158 chr22:39017164-39053297 Sample_02_0017 Embryo H9_ESC 158 7 1354 125 0 29 2412 APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3G,APOBEC3B,APOBEC3H
SE_02_006500465 chr22:39017391-39053463 Sample_02_0065 Embryo KO2-Late_G1 465 4 1355 121 0 29 2442 APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3G,APOBEC3B,APOBEC3H
SE_02_104800524 chr22:39017635-39050487 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 524 15 1218 109 0 22 2121 APOBEC3F,APOBEC3D,APOBEC3C,APOBEC3H,APOBEC3G,APOBEC3B
SE_02_050200275 chr22:39055981-39118815 Sample_02_0502 Blood HL-60_PMA_16h 275 13 2010 274 3 19 1808 APOBEC3H,APOBEC3G,APOBEC3C,CBX7,APOBEC3D,APOBEC3F
SE_02_088500109 chr22:39056019-39078390 Sample_02_0885 Blood NALM6_2 109 5 721 43 0 6 217 APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_017600479 chr22:39059063-39091191 Sample_02_0176 Peripheral blood LOUCY 479 7 1062 102 0 16 1122 APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3H
SE_02_073900129 chr22:39059777-39080725 Sample_02_0739 Blood Nalm6 129 4 687 41 0 6 495 APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_057300122 chr22:39060793-39083510 Sample_02_0573 Blood Nalm6_1 122 3 752 55 0 16 693 APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_139300578 chr22:39060929-39073881 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 578 7 417 25 0 6 0 APOBEC3D,APOBEC3G,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_073600259 chr22:39060992-39073277 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 259 10 399 24 0 6 0 APOBEC3D,APOBEC3G,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_011800110 chr22:39061172-39079792 Sample_02_0118 Haematopoietic and lymphoid tissue MINO 110 1 614 37 0 6 334 APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3H
SE_02_078400050 chr22:39061360-39122196 Sample_02_0784 Blood OSU-CLL 50 16 1915 274 3 19 1781 APOBEC3H,APOBEC3G,APOBEC3C,CBX7,APOBEC3D,APOBEC3F
SE_02_038700430 chr22:39061417-39090551 Sample_02_0387 Lymph node CD19+_B_cells_nhl_FL1-2 430 12 970 95 0 16 1122 APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3H
SE_02_122200031 chr22:39061442-39118585 Sample_02_1222 Bone marrow KMS12 31 14 1831 265 3 19 1781 APOBEC3H,APOBEC3G,APOBEC3C,CBX7,APOBEC3D,APOBEC3F
SE_02_115700514 chr22:39061470-39073459 Sample_02_1157 Peripheral blood Day6 Plasmablast CD23- memory B cell_G9A-Inhibited 514 14 392 25 0 6 0 APOBEC3D,APOBEC3G,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_121800681 chr22:39061501-39075327 Sample_02_1218 Bone marrow Daudi 681 8 441 26 0 6 0 APOBEC3D,APOBEC3G,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_012300178 chr22:39062696-39081035 Sample_02_0123 Haematopoietic and lymphoid tissue GRANTA-519 178 2 611 34 0 11 555 APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3H
SE_02_078200888 chr22:39062887-39069078 Sample_02_0782 Blood MEC1 888 1 206 9 0 0 0 APOBEC3D,APOBEC3G,APOBEC3F,APOBEC3H,APOBEC3C
SE_00_005600898 chr22:39063342-39099944 Sample_00_0056 Sigmoid colon sigmoid colon 3y 898 18 1219 144 0 16 1236 APOBEC3H,APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3C
SE_02_122500509 chr22:39063347-39080972 Sample_02_1225 Bone marrow RAJI 509 8 594 33 0 6 544 APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3H,APOBEC3C
SE_02_028300039 chr22:39063385-39080319 Sample_02_0283 Peripheral blood p7-CLL-patient_CD74 39 15 571 33 0 6 431 APOBEC3G,APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3H
SE_02_061200526 chr22:39063597-39101049 Sample_02_0612 Liposarcoma DDLPS_T2 526 12 1249 161 0 16 1315 APOBEC3H,APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3C
SE_02_104300052 chr22:39063622-39150502 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 52 49 2673 348 13 86 3015 APOBEC3H,APOBEC3G,CBX7,APOBEC3C,APOBEC3D,APOBEC3F
SE_01_005900190 chr22:39063628-39070193 Sample_01_0059 Lung PC-9 190 1 221 7 0 0 0 APOBEC3C,APOBEC3F,APOBEC3D,APOBEC3H,APOBEC3G
SE_02_142900257 chr22:39063667-39131674 Sample_02_1429 Blood GM12878_WT 257 18 2133 292 5 24 1981 APOBEC3H,APOBEC3G,CBX7,APOBEC3C,APOBEC3D,APOBEC3F,APOBEC3B,CBX6
SE_02_015100738 chr22:39064526-39092822 Sample_02_0151 Mammary gland MDA-MB-231_TA1del 738 4 936 98 0 16 1122 APOBEC3G,APOBEC3F,APOBEC3H,APOBEC3D
SE_02_130500584 chr22:39064620-39069130 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 584 2 141 5 0 0 0 APOBEC3D,APOBEC3G,APOBEC3F,APOBEC3H
SE_02_082700440 chr22:39064958-39093271 Sample_02_0827 Stomach normal gastric 440 7 925 98 0 16 1122 APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3H
SE_02_122700515 chr22:39068107-39100484 Sample_02_1227 Bone marrow U266 515 15 1077 149 0 16 1295 APOBEC3H,APOBEC3G,APOBEC3D,APOBEC3F
SE_02_103900170 chr22:39069315-39095176 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 170 12 860 101 0 16 1122 APOBEC3G,APOBEC3D,APOBEC3F,APOBEC3H
SE_02_103200556 chr22:39069541-39108035 Sample_02_1032 Head and neck SCC1 JQ1 556 9 1286 205 3 19 1781 APOBEC3H,APOBEC3G,APOBEC3D,CBX7,APOBEC3F
SE_02_045600642 chr22:39079007-39101073 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 642 6 737 133 0 10 1075 APOBEC3H,APOBEC3G,APOBEC3F
SE_02_104500281 chr22:39079090-39099602 Sample_02_1045 Peripheral blood CD4+ CD7- cells_CTCL992 281 11 676 111 0 10 976 APOBEC3H,APOBEC3G,APOBEC3F
SE_02_045400437 chr22:39080007-39100922 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 437 7 699 128 0 10 941 APOBEC3H,APOBEC3G,APOBEC3F
SE_02_104800616 chr22:39081096-39102437 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 616 15 716 141 1 3 1041 APOBEC3H,APOBEC3G,APOBEC3F
SE_02_087200501 chr22:39081560-39100049 Sample_02_0872 Colon HCT116_siCtrl-5FU 501 3 607 109 0 0 591 APOBEC3H,APOBEC3G,APOBEC3F
SE_02_104000397 chr22:39083301-39100700 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 397 10 575 110 0 0 622 APOBEC3H,APOBEC3G,APOBEC3F
SE_02_104100122 chr22:39083334-39100511 Sample_02_1041 Peripheral blood CD4+ cells_CTCL1135 122 13 566 109 0 0 605 APOBEC3H,APOBEC3G,APOBEC3F
SE_02_104200357 chr22:39083921-39099914 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 357 11 515 93 0 0 449 APOBEC3H,APOBEC3G,APOBEC3F
SE_02_045500599 chr22:39086654-39100132 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 599 5 446 75 0 0 329 APOBEC3H,APOBEC3G,APOBEC3F
SE_02_050100422 chr22:39087879-39115260 Sample_02_0501 Blood HL-60_CTRL 422 7 863 175 3 3 666 APOBEC3H,APOBEC3G,CBX7,APOBEC3F
SE_02_087300424 chr22:39088040-39102540 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 424 4 486 99 1 3 512 APOBEC3H,APOBEC3G,CBX7,APOBEC3F
SE_02_139300808 chr22:39088479-39100476 Sample_02_1393 Lymph node anaplastic large cell lymphoma cells_ALK+#54 808 5 392 76 0 0 172 APOBEC3H,APOBEC3G,APOBEC3F
SE_02_104701025 chr22:39088629-39092379 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1025 1 123 17 0 0 0 APOBEC3G,APOBEC3F,APOBEC3H
SE_02_059200311 chr22:39089719-39100521 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 311 4 350 67 0 0 176 APOBEC3H,APOBEC3G,APOBEC3F
SE_02_045700549 chr22:39089875-39100883 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 549 3 358 69 0 0 193 APOBEC3H,APOBEC3G,APOBEC3F
SE_02_104400389 chr22:39090052-39099887 Sample_02_1044 Peripheral blood CD4+ cells_CTCL409 389 5 312 55 0 0 114 APOBEC3H,APOBEC3G,APOBEC3F
SE_02_073600210 chr22:39090199-39118414 Sample_02_0736 Blood Pt24_leukemia cell_THZ1 210 10 867 170 3 3 659 APOBEC3H,APOBEC3G,CBX7,APOBEC3F
SE_02_004000441 chr22:39110504-39149030 Sample_02_0040 Embryo PFG 441 10 1081 124 10 65 1158 CBX7,APOBEC3H,APOBEC3G
SE_02_075500590 chr22:39110695-39118239 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 590 1 199 36 0 0 0 APOBEC3G,CBX7,APOBEC3H
SE_02_068000315 chr22:39111655-39146154 Sample_02_0680 Embryo H1 hESC-derived neural progenitor cells_Smad_48hr 315 8 955 109 9 64 1158 CBX7,APOBEC3G,APOBEC3H,APOBEC3F,AL031590.1
SE_02_104601794 chr22:39120106-39149612 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1794 13 853 86 10 66 1158 CBX7,APOBEC3G,APOBEC3H
SE_02_104800755 chr22:39127573-39149160 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 755 13 627 61 8 65 1158 CBX7,APOBEC3H
SE_02_021600841 chr22:39128655-39149759 Sample_02_0216 Skin NHEK_scramble 841 5 611 61 8 66 1192 CBX7,APOBEC3H
SE_02_082700841 chr22:39128871-39149923 Sample_02_0827 Stomach normal gastric 841 4 610 61 8 67 1212 CBX7,APOBEC3H,AL031590.1
SE_01_007800844 chr22:39129959-39154029 Sample_01_0078 Heart left ventricle heart-left-ventricle 844 3 685 75 10 114 1384 CBX7,APOBEC3H
SE_01_008900693 chr22:39130612-39154016 Sample_01_0089 Transverse colon transverse-colon 693 3 659 72 10 112 1378 CBX7,APOBEC3H
SE_01_008800869 chr22:39130895-39154465 Sample_01_0088 Tibial nerve tibial-nerve 869 2 659 72 10 112 1349 CBX7,APOBEC3H
SE_00_004000522 chr22:39130945-39153714 Sample_00_0040 Spleen spleen_30y 522 5 639 72 10 108 1344 CBX7,APOBEC3H,AL031590.1,PDGFB
SE_02_003200692 chr22:39130946-39153993 Sample_02_0032 Pancreas pancreatic-islets-M 692 4 647 72 10 109 1344 CBX7,APOBEC3H
SE_02_117300531 chr22:39131198-39185980 Sample_02_1173 Brain GBM01 531 11 1571 169 14 190 1301 CBX7,APOBEC3H
SE_00_002900242 chr22:39131446-39153780 Sample_00_0029 Ovary ovary 242 8 627 71 10 107 1237 CBX7,APOBEC3H
SE_02_155301030 chr22:39131507-39152624 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 1030 3 597 65 9 101 1197 CBX7,APOBEC3H
SE_02_103601870 chr22:39134350-39146154 Sample_02_1036 Mammary gland HCC70_XY018 1870 5 328 31 4 39 382 CBX7,APOBEC3H
SE_02_103502089 chr22:39134383-39146190 Sample_02_1035 Mammary gland HCC70_Vehicle 2089 5 326 31 4 39 371 CBX7,APOBEC3H
SE_02_001600579 chr22:39139925-39153601 Sample_02_0016 Blood erythroblasts 579 3 358 42 5 67 332 CBX7,APOBEC3H
SE_01_008401105 chr22:39143480-39153910 Sample_01_0084 Spleen spleen 1105 1 273 30 3 63 226 CBX7,APOBEC3H
SE_02_122600191 chr22:39143699-39152733 Sample_02_1226 Bone marrow RPMI-8226 191 2 237 24 2 62 226 CBX7,APOBEC3H
SE_01_009100749 chr22:39143735-39154039 Sample_01_0091 Uterus uterus 749 1 268 29 3 65 226 CBX7,APOBEC3H
SE_00_003401143 chr22:39143785-39153795 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 1143 2 264 29 3 63 226 CBX7,APOBEC3H
SE_01_009200678 chr22:39143786-39153959 Sample_01_0092 Vagina vagina 678 1 266 29 3 63 226 CBX7,APOBEC3H
SE_00_003901072 chr22:39143815-39153805 Sample_00_0039 Spleen spleen_3y 1072 2 264 29 3 63 226 CBX7,APOBEC3H,AL031590.1,PDGFB
SE_02_122400696 chr22:39143906-39152588 Sample_02_1224 Bone marrow normal plasma cell 696 1 233 23 2 53 195 CBX7,APOBEC3H
SE_01_010400949 chr22:39143967-39153671 Sample_01_0104 Lung upper lobe of left lung 949 2 257 29 3 62 226 CBX7,APOBEC3H,SUN2,PDGFB,APOBEC3C,APOBEC3G,APOBEC3F,APOBEC3D
SE_02_122100831 chr22:39144023-39150679 Sample_02_1221 Bone marrow KMS11 831 5 181 15 1 18 76 CBX7,APOBEC3H
SE_02_119600811 chr22:39144220-39186278 Sample_02_1196 Brain GBM32 811 10 1202 126 7 146 226 CBX7,APOBEC3H
SE_02_059200442 chr22:39144424-39149578 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 442 3 144 13 1 17 0 CBX7,APOBEC3H
SE_02_035000634 chr22:39145069-39153754 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 634 5 234 26 3 63 226 CBX7,APOBEC3H
SE_02_101200136 chr22:39145841-39150161 Sample_02_1012 Brain Lateral temporal lobe_8T_AD 136 2 132 11 1 4 76 CBX7,APOBEC3H
SE_02_101000143 chr22:39145853-39149037 Sample_02_1010 Brain Lateral temporal lobe_3T_AD 143 4 97 8 1 2 0 CBX7,APOBEC3H
Genomic distribution of SEs associated with APOBEC3H
Genome Browser

The strength of the tissue affected by the gene

Expression of APOBEC3H

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)