SEdb 2.0
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Gene overview

Strategies/Algorithm: prestige Ensembl ID:
Gene: C6ORF48 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_003800049 chr6:31733749-31748042 Sample_01_0038 Liver HepG2 49 2 334 39 5 106 986 CLIC1,MSH5,VARS,BAT5,C6ORF26,LY6G6C,DDAH2,C6ORF25,LY6G6D,LY6G6F,LY6G6E,C6ORF27,ABHD16A,APO,C6ORF48,GPANK1,LY6G5B,SH5,SAPCD1,VWA7
SE_02_011500094 chr6:31794254-31837515 Sample_02_0115 Mammary gland MCF-7 94 7 969 108 17 324 2658 HSPA1L,HSPA1B,SNORD52,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27,DDAH2
SE_01_003900649 chr6:31820972-31823648 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 649 1 45 2 0 0 0 VARS,HSPA1L,C6ORF48,NEU1,HSPA1B,SNORD52,HSPA1A,LSM2,C6ORF27,SNORD48,CLIC1,LS2,SH5,SAPCD1,SLC44A4,VWA7,ZBTB12
SE_01_003900419 chr6:31833589-31838828 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 419 1 171 16 4 4 316 SNORD52,C6ORF48,SNORD48,VARS,HSPA1L,NEU1,LSM2,HSPA1B,SLC44A4,HSPA1A,CLIC1,LS2,SH5,SAPCD1,VWA7,ZBTB12
Genomic distribution of SEs associated with C6ORF48
Genome Browser

The strength of the tissue affected by the gene

Expression of C6ORF48

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)