SEdb 3.0
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Super-enhancer overview

SE ID: SE_01_003900419
Species: Human
Data source: ENCODE
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562
Genomic region: chr6:31833589-31838828
Size: 5239
Super-enhancer rank 419
Number of SE elements: 1
ChIP density(Case|Control): 30025.7568|1322.8475
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SNORD52 ;
ROSE Overlap SNORD52 ; C6orf48 ; SNORD48 ;
ROSE Proximal VARS ; HSPA1L ; C6orf48 ; NEU1 ; LSM2 ; HSPA1B ; SLC44A4 ; HSPA1A ;
ROSE Closest SNORD52 ;
Lasso ;
PreSTIGE C6orf48 ; CLIC1 ; HSPA1A ; HSPA1B ; HSPA1L ; LS2 ; SH5 ; NEU1 ; SAPCD1 ; SLC44A4 ; VARS ; VWA7 ; ZBTB12 ;
ABC ;
BETA C2 ; SNORD48 ; SNORD52 ; CLIC1 ; HSPA1B ; SAPCD1-AS1 ; C6orf48 ; SLC44A4 ; VARS ; EHMT2 ; MSH5 ; LSM2 ; HSPA1A ; HSPA1L ; MSH5-SAPCD1 ; ZBTB12 ; NEU1 ; VWA7 ; SAPCD1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_01_003900419 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers