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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000161996
Gene: WDR90 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:649311-667833 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_006900370 chr16:635573-650034 Sample_01_0069 Adrenal gland adrenal-gland 370 1 447 25 0 71 1589 FAM195A,WDR90,C16ORF13,WDR24,WFIKKN1,RHOT2,RAB40C,JMJD8,RHBDL1,STUB1
SE_01_010100849 chr16:637282-662042 Sample_01_0101 Pancreas pancreas_54y 849 6 956 68 1 161 3928 FAM195A,WDR90,RHBDL1,WFIKKN1,RAB40C,STUB1,FBXL16,JMJD8,WDR24,RHOT2,C16ORF13
SE_02_078100732 chr16:637314-652106 Sample_02_0781 Lymphoma Pfeiffer_DMSO 732 1 474 26 0 77 1710 FAM195A,WDR90,RHBDL1,WFIKKN1,RAB40C,STUB1,JMJD8,WDR24,RHOT2,C16ORF13
SE_02_147600482 chr16:637367-661641 Sample_02_1476 Bone EW-1 482 4 930 65 1 152 3835 FAM195A,WDR90,RHBDL1,WFIKKN1,RAB40C,STUB1,FBXL16,JMJD8,WDR24,RHOT2,C16ORF13
SE_02_104301622 chr16:638160-659944 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1622 5 835 53 0 138 3298 FAM195A,WDR90,RHBDL1,WFIKKN1,RAB40C,STUB1,FBXL16,JMJD8,WDR24,RHOT2,C16ORF13
SE_02_076500248 chr16:638683-652974 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 248 1 475 23 0 80 1623 FAM195A,WDR90,RHBDL1,WFIKKN1,RAB40C,STUB1,JMJD8,WDR24,RHOT2,C16ORF13
SE_02_122700678 chr16:638753-661574 Sample_02_1227 Bone marrow U266 678 4 887 60 1 150 3590 FAM195A,WDR90,RHBDL1,WFIKKN1,RAB40C,STUB1,FBXL16,JMJD8,WDR24,RHOT2,C16ORF13
SE_02_104601977 chr16:638810-663890 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1977 4 1000 73 1 165 4009 FAM195A,WDR90,RHBDL1,WFIKKN1,RAB40C,STUB1,FBXL16,JMJD8,WDR24,RHOT2,C16ORF13
SE_02_040400376 chr16:639513-650849 Sample_02_0404 Mammary gland ZR-75-1_2 376 2 358 15 0 64 1135 FAM195A,WDR90,WDR24,WFIKKN1,RAB40C,JMJD8,RHOT2,RHBDL1,C16ORF13,STUB1
SE_02_035800231 chr16:640149-651286 Sample_02_0358 Colon LS180 231 1 368 16 0 72 1251 FAM195A,WDR90,WDR24,WFIKKN1,RHOT2,JMJD8,RHBDL1,C16ORF13,RAB40C,STUB1
SE_02_076400534 chr16:640292-651339 Sample_02_0764 Prostate LNCaP_DHT_DMSO_6h 534 1 372 18 0 72 1269 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,STUB1,JMJD8,WDR24,C16ORF13
SE_02_116801118 chr16:640299-653766 Sample_02_1168 Biliary H69_TGF Vehicle_2 1118 1 478 24 0 83 1752 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,STUB1,JMJD8,WDR24,C16ORF13
SE_00_001400497 chr16:640372-649738 Sample_00_0014 Heart left ventricle heart-left-ventricle 497 1 303 14 0 50 888 FAM195A,WDR90,WDR24,STUB1,WFIKKN1,RHOT2,JMJD8,RHBDL1,C16ORF13
SE_02_024200879 chr16:640391-651338 Sample_02_0242 Colon V481 879 1 369 18 0 72 1268 FAM195A,WDR90,WDR24,STUB1,WFIKKN1,RHOT2,JMJD8,RHBDL1,C16ORF13
SE_02_016800484 chr16:640548-662203 Sample_02_0168 Prostate LNCaP 484 3 888 63 1 160 3731 FAM195A,WDR90,WDR24,FBXL16,STUB1,WFIKKN1,RHOT2,JMJD8,RHBDL1,C16ORF13
SE_02_088401050 chr16:640724-650995 Sample_02_0884 Colon LoVo 1050 3 337 16 0 64 1178 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,STUB1,JMJD8,WDR24,C16ORF13
SE_02_047800218 chr16:640758-661689 Sample_02_0478 Colon normal colon mucosa 218 4 848 59 1 154 3609 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,STUB1,FBXL16,JMJD8,WDR24,C16ORF13
SE_01_008200988 chr16:640786-649920 Sample_01_0082 Right lobe of liver right-lobe-of-liver 988 1 294 14 0 50 934 FAM195A,WDR90,WDR24,STUB1,WFIKKN1,RHOT2,JMJD8,RHBDL1,C16ORF13
SE_01_007900312 chr16:640843-661946 Sample_01_0079 Peyers patch Peyers-patch 312 2 865 62 1 157 3668 FAM195A,WDR90,WDR24,FBXL16,STUB1,WFIKKN1,RHOT2,JMJD8,RHBDL1,C16ORF13
SE_02_024000312 chr16:640854-650956 Sample_02_0240 Colon V429_2 312 3 333 15 0 64 1171 FAM195A,WDR90,WDR24,STUB1,WFIKKN1,RHOT2,JMJD8,RHBDL1,C16ORF13
SE_02_047700396 chr16:640957-661256 Sample_02_0477 Colon intestinal epithelial organoids_139a 396 4 821 55 1 148 3502 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,STUB1,FBXL16,JMJD8,WDR24,C16ORF13
SE_01_010900671 chr16:640971-661443 Sample_01_0109 Colon transverse colon_54y 671 3 832 56 1 149 3542 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,STUB1,FBXL16,JMJD8,WDR24,C16ORF13
SE_02_035500257 chr16:640975-661655 Sample_02_0355 Colon HCT15 257 2 841 59 1 153 3597 FAM195A,WDR90,WDR24,FBXL16,STUB1,WFIKKN1,RHOT2,JMJD8,RHBDL1,C16ORF13
SE_01_009900346 chr16:641020-660796 Sample_01_0099 Colon transverse colon 346 4 802 52 1 140 3358 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,STUB1,FBXL16,JMJD8,WDR24,C16ORF13
SE_02_002100938 chr16:641101-650631 Sample_02_0021 Colon V429 938 1 313 14 0 62 1098 FAM195A,WDR90,WDR24,STUB1,WFIKKN1,RHOT2,JMJD8,RHBDL1,C16ORF13
SE_02_078000579 chr16:642363-649439 Sample_02_0780 Liver SMMC-7721 579 1 245 10 0 45 555 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,STUB1,JMJD8,WDR24,C16ORF13
SE_02_104902078 chr16:643584-650349 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 2078 1 242 10 0 54 789 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,STUB1,JMJD8,WDR24,C16ORF13
SE_02_023600556 chr16:643723-650270 Sample_02_0236 Colon V206 556 3 236 10 0 49 778 FAM195A,WDR90,WDR24,STUB1,WFIKKN1,RHOT2,JMJD8,RHBDL1,C16ORF13
SE_02_024100797 chr16:643727-650319 Sample_02_0241 Colon V456 797 3 238 10 0 52 783 FAM195A,WDR90,WDR24,STUB1,WFIKKN1,RHOT2,JMJD8,RHBDL1,C16ORF13
SE_02_136500233 chr16:643738-661521 Sample_02_1365 Pancreas AsPC1-untreated 233 3 770 52 1 143 3322 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,STUB1,FBXL16,JMJD8,WDR24,C16ORF13
SE_02_087400332 chr16:643783-673912 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 332 6 1400 121 1 240 5782 RHOT2,FAM195A,WDR90,RHBDL1,WFIKKN1,METRN,STUB1,FAM173A,FBXL16,JMJD8,WDR24,C16ORF13
SE_02_147000680 chr16:643821-650290 Sample_02_1470 Umbilical Vein H441 680 1 231 10 0 50 779 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,STUB1,JMJD8,WDR24,C16ORF13
SE_02_105400909 chr16:644466-650501 Sample_02_1054 Esophagus SKGT4 909 3 214 9 0 54 827 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,STUB1,JMJD8,WDR24,C16ORF13
SE_02_039601691 chr16:645456-654053 Sample_02_0396 Skin NHEK-D 1691 1 341 18 0 78 1573 FAM195A,WDR90,WDR24,STUB1,WFIKKN1,RHOT2,JMJD8,RHBDL1,C16ORF13
SE_02_016300333 chr16:646978-661545 Sample_02_0163 Prostate C4-2B_SR2211_24h 333 2 641 50 1 130 3183 FAM195A,WDR90,WDR24,FBXL16,STUB1,WFIKKN1,RHOT2,JMJD8,RHBDL1,C16ORF13
SE_02_114400078 chr16:647236-666330 Sample_02_1144 Peripheral nerve S462_PRC2 mutant 78 9 865 79 1 156 3950 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,METRN,STUB1,FBXL16,JMJD8,WDR24,C16ORF13
SE_02_102800315 chr16:647754-661344 Sample_02_1028 Blood HL-60_WT 315 3 604 49 1 123 3023 FAM195A,WDR90,RHBDL1,RHOT2,WFIKKN1,STUB1,FBXL16,JMJD8,WDR24,C16ORF13
SE_02_039600129 chr16:665306-688306 Sample_02_0396 Skin NHEK-D 129 1 1015 70 2 316 4656 STUB1,RHBDL1,WDR90,JMJD8,WDR24,RHOT2,HAGHL,WFIKKN1,FAM173A,FBXL16,FAM195A,METRN,CCDC78,C16ORF13
Genomic distribution of SEs associated with WDR90
Genome Browser

The strength of the tissue affected by the gene

Expression of WDR90

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)