SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000184281
Gene: TSSC4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr11:2400488-2403878 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_027700182 chr11:2365399-2412004 Sample_02_0277 Retina FW18 182 5 1820 173 2 150 2797 TSSC4,CD81,TRPM5,KCNQ1
SE_02_028400160 chr11:2365558-2421672 Sample_02_0284 Pelvis patient 119 160 11 2254 188 4 237 4373 TSSC4,CD81,TRPM5,KCNQ1
SE_02_021100165 chr11:2365597-2405374 Sample_02_0211 Lung MRC-5_NFD_1DPT 165 7 1466 160 1 113 2028 TSSC4,CD81,TRPM5,KCNQ1
SE_01_009200138 chr11:2365739-2420976 Sample_01_0092 Vagina vagina 138 7 2217 186 4 227 4253 TSSC4,CD81,TRPM5,KCNQ1
SE_02_038100481 chr11:2372662-2405880 Sample_02_0381 Heart purified cardiomyocyte WT 481 4 1211 136 2 111 2142 TSSC4,CD81,TRPM5,KCNQ1
SE_02_027500110 chr11:2376459-2421735 Sample_02_0275 Retina FW14 110 7 1850 149 4 229 4373 TSSC4,CD81,TRPM5,KCNQ1
SE_01_008900265 chr11:2377006-2409678 Sample_01_0089 Transverse colon transverse-colon 265 3 1267 132 2 127 2600 TSSC4,CD81,TRPM5,KCNQ1
SE_01_009100146 chr11:2377101-2420708 Sample_01_0091 Uterus uterus 146 5 1790 147 4 215 4229 TSSC4,CD81,TRPM5,KCNQ1
SE_02_035900081 chr11:2377161-2402672 Sample_02_0359 Colon Colo741 81 3 914 116 1 90 1443 CD81,TSSC4,KCNQ1,TRPM5
SE_02_029700475 chr11:2377218-2421237 Sample_02_0297 Neuroblastoma CLB-CAR 475 7 1805 148 4 226 4290 TSSC4,CD81,TRPM5,KCNQ1
SE_02_034400069 chr11:2377428-2408201 Sample_02_0344 Blood CD34 69 6 1167 126 2 122 2510 TSSC4,CD81,TRPM5,KCNQ1
SE_02_038000326 chr11:2377436-2402334 Sample_02_0380 Skeletal muscle RH18 326 5 895 114 1 84 1291 CD81,TSSC4,KCNQ1,TRPM5
SE_02_077900028 chr11:2377483-2406347 Sample_02_0779 Lymphoma U2932 28 4 1093 125 2 104 2133 TRPM5,TSSC4,CD81,CD81-AS1,KCNQ1
SE_02_141600792 chr11:2377547-2401832 Sample_02_1416 Brain SF9402 792 5 871 114 1 84 1191 CD81,CD81-AS1,TSSC4,TRPM5,KCNQ1
SE_02_114500331 chr11:2378832-2406777 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 331 12 1084 124 2 90 1978 TRPM5,CD81,TSSC4,CD81-AS1,KCNQ1
SE_02_005000169 chr11:2379375-2421252 Sample_02_0050 Skin BJ 169 16 1763 146 4 205 3990 TSSC4,CD81,TRPM5,KCNQ1
SE_02_078100245 chr11:2379450-2403551 Sample_02_0781 Lymphoma Pfeiffer_DMSO 245 3 907 116 1 77 1349 CD81,TSSC4,TRPM5,CD81-AS1,KCNQ1
SE_02_095100391 chr11:2379464-2403589 Sample_02_0951 HMSCs hMSCs 391 12 911 116 1 79 1353 CD81,TSSC4,TRPM5,CD81-AS1,KCNQ1
SE_02_110700621 chr11:2379470-2403450 Sample_02_1107 Brain SK-N-AS 621 13 902 115 1 77 1325 CD81,TSSC4,TRPM5,CD81-AS1,KCNQ1
SE_02_110000046 chr11:2379484-2421332 Sample_02_1100 Brain COG-N-415 46 11 1766 146 4 205 4020 TRPM5,CD81,TSSC4,CD81-AS1,KCNQ1
SE_02_104900382 chr11:2379501-2405319 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 382 11 987 119 1 81 1687 TRPM5,CD81,TSSC4,CD81-AS1,KCNQ1
SE_02_103000356 chr11:2379517-2427976 Sample_02_1030 Colon DKO 356 32 2034 151 4 222 4348 TRPM5,CD81,TSSC4,CD81-AS1,KCNQ1
SE_02_110400658 chr11:2379532-2420856 Sample_02_1104 Brain NB-69 658 16 1748 146 4 192 3895 TRPM5,CD81,TSSC4,CD81-AS1,KCNQ1
SE_02_110200069 chr11:2379553-2426949 Sample_02_1102 Brain LA-N-5 69 15 2000 150 4 221 4348 TRPM5,CD81,TSSC4,CD81-AS1,KCNQ1
SE_02_110300023 chr11:2379561-2426510 Sample_02_1103 Brain NB-1643 23 18 1981 150 4 221 4348 TRPM5,CD81,TSSC4,CD81-AS1,KCNQ1
SE_02_111200508 chr11:2379722-2401719 Sample_02_1112 T lymphocyte THP-6 T-ALL 508 5 822 111 1 61 1002 CD81,TSSC4,TRPM5,CD81-AS1,KCNQ1
SE_02_061701212 chr11:2380341-2402374 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 1212 4 831 112 1 57 1058 CD81,TSSC4,TRPM5,CD81-AS1,KCNQ1
SE_02_116000509 chr11:2380561-2405968 Sample_02_1160 Embryo H1_shLuc 509 6 990 120 2 74 1829 TRPM5,CD81,TSSC4,CD81-AS1,KCNQ1
SE_02_022000410 chr11:2382472-2420888 Sample_02_0220 Brain BE2C_1 410 6 1667 139 4 179 3902 TSSC4,CD81,TRPM5,KCNQ1
SE_02_030300271 chr11:2382641-2420870 Sample_02_0303 Neuroblastoma LAN1 271 6 1657 139 4 179 3899 TSSC4,CD81,TRPM5,KCNQ1
SE_02_138400142 chr11:2382752-2432818 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 142 16 2105 150 4 210 4348 TRPM5,CD81,TSSC4,CD81-AS1,KCNQ1
SE_02_138100390 chr11:2383144-2420866 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 390 15 1643 139 4 177 3898 TRPM5,CD81,TSSC4,CD81-AS1,KCNQ1
SE_02_088600844 chr11:2384633-2402140 Sample_02_0886 Skin foreskin_ p63KLF4 844 1 687 103 1 45 1006 CD81,TSSC4,TRPM5,CD81-AS1,KCNQ1
SE_02_010600121 chr11:2385070-2421546 Sample_02_0106 Skin NHEK_M 121 8 1618 137 4 180 4039 TSSC4,CD81,TRPM5,KCNQ1
SE_02_031300397 chr11:2388100-2420906 Sample_02_0313 Neuroblastoma SK-N-DZ 397 4 1481 121 4 170 3907 TSSC4,CD81,TRPM5,KCNQ1
SE_02_138300339 chr11:2389326-2420866 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 339 9 1433 110 4 167 3898 TRPM5,CD81,TSSC4,CD81-AS1,KCNQ1
SE_02_025300506 chr11:2390015-2421648 Sample_02_0253 Brain BE2C_DMSO 506 6 1435 102 4 180 4039 TSSC4,CD81,TRPM5,KCNQ1
SE_02_039601618 chr11:2398196-2404040 Sample_02_0396 Skin NHEK-D 1618 1 241 24 0 28 618 TSSC4,KCNQ1,CD81,TRPM5
SE_02_029800188 chr11:2398610-2421198 Sample_02_0298 Neuroblastoma CLB-GA 188 4 1057 48 3 154 3137 TSSC4,TRPM5,KCNQ1,CD81
SE_02_030800173 chr11:2398832-2419812 Sample_02_0308 Neuroblastoma SJNB1 173 4 980 46 3 136 2882 TSSC4,TRPM5,KCNQ1,CD81
SE_02_029900310 chr11:2399341-2421361 Sample_02_0299 Neuroblastoma CLB-MA 310 3 1037 46 3 154 3187 TSSC4,TRPM5,KCNQ1,CD81
SE_02_007500226 chr11:2399495-2420986 Sample_02_0075 Autonomic ganglia kelly_DMSO_3h 226 3 1014 46 3 144 3079 TSSC4,TRPM5,KCNQ1,CD81
SE_02_124600153 chr11:2402906-2421190 Sample_02_1246 Brain LAN5_ATRA 153 5 886 32 3 135 2800 TRPM5,TSSC4,CD81,CD81-AS1,KCNQ1
Genomic distribution of SEs associated with TSSC4
Genome Browser

The strength of the tissue affected by the gene

Expression of TSSC4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)