SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000160183
Gene: TMPRSS3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr21:42371887-42396091 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_136700170 chr21:42335771-42376828 Sample_02_1367 Pancreas Capan1-untreated 170 12 1570 130 9 68 1060 TFF2,TFF1,TMPRSS3,UBASH3A,TFF3
SE_00_004200730 chr21:42337859-42377658 Sample_00_0042 Stomach stomach_30y 730 8 1551 122 9 68 1068 TMPRSS3,TFF2,TFF1,UBASH3A,TFF3
SE_02_104601048 chr21:42338288-42386643 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1048 18 1881 141 11 100 1644 TFF2,TMPRSS3,TFF1,UBASH3A,TFF3
SE_02_071100441 chr21:42348401-42386078 Sample_02_0711 Pancreas hN35_organoid 441 9 1501 112 9 97 1450 TFF2,TMPRSS3,TFF1,UBASH3A,TFF3
SE_02_151100647 chr21:42352725-42373658 Sample_02_1511 Lung H3122_untreated 647 9 828 77 6 22 427 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_025700433 chr21:42355244-42386228 Sample_02_0257 Endometrioid endometrioid_adenocarcinoma_TumorA 433 5 1224 98 7 83 1220 TMPRSS3,TFF1,TFF2,UBASH3A,TFF3
SE_02_081800542 chr21:42356635-42397259 Sample_02_0818 Ovary High-grade serous ovarian cancer 542 11 1536 123 7 111 1778 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_071000703 chr21:42356946-42386892 Sample_02_0710 Pancreas hN34_organoid 703 8 1178 85 6 83 1220 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_077502362 chr21:42359472-42379483 Sample_02_0775 Pancreas EndoC-BH1_SE 2362 6 813 53 2 49 644 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_01_004600198 chr21:42359754-42381883 Sample_01_0046 Mammary gland MCF-7 198 3 900 54 2 52 754 TMPRSS3,TFF1,TFF2,UBASH3A,TFF3
SE_02_085300140 chr21:42360059-42392600 Sample_02_0853 Mammary gland MCF7L-TamR 140 6 1265 80 5 100 1536 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_062600205 chr21:42360630-42392116 Sample_02_0626 Mammary gland WS8_E2 205 4 1234 75 5 99 1536 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_062300255 chr21:42360718-42391653 Sample_02_0623 Mammary gland TAMR_E2 255 4 1216 73 5 99 1536 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_052600081 chr21:42361211-42392409 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 81 16 1216 70 5 99 1536 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_056500175 chr21:42361277-42378598 Sample_02_0565 Mammary gland MCF7L-P_E2_16h 175 8 697 38 2 48 644 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_157500169 chr21:42361344-42381534 Sample_02_1575 Mammary gland MCF7_Mock 169 9 817 44 2 51 737 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_066700142 chr21:42361383-42377860 Sample_02_0667 Mammary gland MCF7_FA 142 4 676 37 2 48 644 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_052700141 chr21:42361425-42392046 Sample_02_0527 Mammary gland MCF7_WT 141 15 1202 69 5 99 1536 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_049600034 chr21:42361579-42378310 Sample_02_0496 Mammary gland C49R 34 9 683 38 2 48 644 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_011500235 chr21:42361949-42378489 Sample_02_0115 Mammary gland MCF-7 235 2 680 37 2 48 644 TMPRSS3,TFF1,TFF2,UBASH3A,TFF3,TPRSS3
SE_02_157600192 chr21:42362224-42380522 Sample_02_1576 Mammary gland MCF7_CPI-455 192 10 757 41 2 51 711 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_152400577 chr21:42362225-42381343 Sample_02_1524 Lung H3122 DMSO 577 5 786 43 2 51 711 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_077700187 chr21:42362492-42392055 Sample_02_0777 Mammary gland MCF7_TAMR 187 3 1167 68 5 99 1480 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_047500955 chr21:42365528-42401771 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 955 7 1371 103 5 104 1622 TFF1,TMPRSS3,TFF2,UBASH3A,TFF3
SE_02_022100107 chr21:42367155-42428985 Sample_02_0221 Blood CCRF-CEM 107 6 2247 216 12 161 2235 UBASH3A,TMPRSS3,TFF2,TFF1
SE_02_022600419 chr21:42367248-42427558 Sample_02_0226 Blood KOPTK1 419 7 2190 214 11 161 2235 UBASH3A,TMPRSS3,TFF2,TFF1
SE_02_078200237 chr21:42368279-42427397 Sample_02_0782 Blood MEC1 237 12 2145 211 11 161 2235 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_098800870 chr21:42369542-42399046 Sample_02_0988 Blood K562_EPZ 870 7 1117 80 4 97 1532 TMPRSS3,TFF2,UBASH3A,TFF1
SE_02_109900242 chr21:42370082-42406616 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 242 14 1364 128 7 111 1729 TMPRSS3,UBASH3A,TFF2,TFF1
SE_01_004300450 chr21:42372457-42428886 Sample_01_0043 Blood KOPT-K1 450 7 2037 200 11 159 2136 UBASH3A,TMPRSS3,TFF2,TFF1
SE_02_012600068 chr21:42373421-42466194 Sample_02_0126 Blood Induced-regulatory-T-cells_DMSO 68 12 3206 312 24 184 2732 UBASH3A,TMPRSS3,TFF2,RSPH1,TFF1,SLC37A1
SE_02_045600063 chr21:42375016-42465989 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 63 18 3119 306 24 182 2732 TMPRSS3,UBASH3A,RSPH1,TFF2,TFF1,SLC37A1
SE_02_104900101 chr21:42375424-42470294 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 101 65 3235 312 24 182 2732 TMPRSS3,UBASH3A,RSPH1,TFF2,TFF1,SLC37A1
SE_02_078300039 chr21:42379160-42476440 Sample_02_0783 Blood MEC2 39 29 3283 330 24 153 2703 RSPH1,TMPRSS3,UBASH3A,TFF2,TFF1,SLC37A1
SE_00_002000943 chr21:42383284-42402512 Sample_00_0020 Large intestine large-intestine_108d 943 3 666 66 4 46 809 TMPRSS3,TFF2,TFF1,UBASH3A
SE_00_003601022 chr21:42383503-42402482 Sample_00_0036 Small intestine small-intestine_108days 1022 3 659 65 4 46 753 TMPRSS3,TFF2,TFF1,UBASH3A
SE_02_122900684 chr21:42383926-42411184 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 684 16 927 109 7 70 925 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_122700268 chr21:42384560-42423538 Sample_02_1227 Bone marrow U266 268 11 1348 163 10 98 1259 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_012800202 chr21:42387032-42465377 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 202 20 2646 275 22 120 1939 UBASH3A,TMPRSS3,TFF2,RSPH1,TFF1,SLC37A1
SE_02_013200057 chr21:42390574-42466194 Sample_02_0132 Lung 1015_CL 57 10 2521 270 21 102 1624 UBASH3A,TMPRSS3,TFF2,RSPH1,TFF1,SLC37A1
SE_02_012700086 chr21:42391262-42466076 Sample_02_0127 Blood Induced-regulatory-T-cells_CPI-703 86 13 2501 267 21 101 1623 UBASH3A,TMPRSS3,TFF2,RSPH1,TFF1,SLC37A1
SE_02_013100062 chr21:42391262-42466076 Sample_02_0131 Lung 1015_PT 62 14 2501 267 21 101 1623 UBASH3A,TMPRSS3,TFF2,RSPH1,TFF1,SLC37A1
SE_00_000700134 chr21:42392538-42462649 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 134 8 2385 254 21 101 1623 UBASH3A,TMPRSS3,TFF2,RSPH1,TFF1,SLC37A1
SE_02_023400587 chr21:42392700-42426752 Sample_02_0234 Tonsil Th17 587 7 1162 148 7 73 901 UBASH3A,TMPRSS3,TFF2,TFF1
SE_00_004400638 chr21:42392770-42426624 Sample_00_0044 Cord blood T-cell 638 6 1157 148 7 73 884 UBASH3A,TMPRSS3,TFF2,TFF1
SE_02_059300377 chr21:42392865-42425693 Sample_02_0593 Fetal spleenocytes fetal naive T cells 377 7 1117 145 7 72 874 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_045700076 chr21:42392876-42426518 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 76 9 1147 146 7 72 874 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_059100500 chr21:42392978-42425268 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 500 6 1104 145 7 70 874 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_045400105 chr21:42393181-42467042 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 105 18 2484 266 21 101 1623 TMPRSS3,UBASH3A,RSPH1,TFF2,TFF1,SLC37A1
SE_02_057600782 chr21:42393338-42406885 Sample_02_0576 Blood HEL_sgLKB1e2 782 3 477 73 4 23 439 TMPRSS3,UBASH3A,TFF2,TFF1
SE_02_057900825 chr21:42393610-42406899 Sample_02_0579 Blood HEL_sgNeg2 825 4 472 71 4 23 439 TMPRSS3,UBASH3A,TFF2,TFF1
Genomic distribution of SEs associated with TMPRSS3
Genome Browser

The strength of the tissue affected by the gene

Expression of TMPRSS3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)