SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000187605
Gene: TET3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:73986404-74108176 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103600140 chr2:73934419-74035584 Sample_02_1036 Mammary gland HCC70_XY018 140 23 2595 201 8 359 690 DGUOK,TET3,DGUOK-AS1,ACTG2
SE_02_032100149 chr2:73936199-74053908 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 149 20 2992 216 8 456 1241 DGUOK,TET3,ACTG2
SE_02_081800890 chr2:73954689-74010253 Sample_02_0818 Ovary High-grade serous ovarian cancer 890 10 1425 95 6 315 455 DGUOK,TET3,DGUOK-AS1
SE_04_000100097 chr2:73956619-74086688 Sample_04_0001 Blood heat shocked K562 97 25 3421 213 11 464 1176 DGUOK,TET3,DGUOK-AS1,MOB1A,BOLA3,MGC10955
SE_02_111200110 chr2:73957115-74072789 Sample_02_1112 T lymphocyte THP-6 T-ALL 110 29 3015 192 8 433 982 DGUOK,TET3,DGUOK-AS1
SE_04_000200161 chr2:73962232-74083874 Sample_04_0002 Blood cold shocked K562 161 23 3205 193 9 459 1002 TET3,DGUOK-AS1,DGUOK,MOB1A,BOLA3,MGC10955
SE_02_057600929 chr2:73962271-73988925 Sample_02_0576 Blood HEL_sgLKB1e2 929 7 682 38 5 148 186 TET3,DGUOK-AS1,DGUOK
SE_02_058000799 chr2:73962312-73988811 Sample_02_0580 Blood HEL_sgSIK3e4 799 7 673 38 4 148 186 TET3,DGUOK-AS1,DGUOK
SE_02_078200891 chr2:73962718-73986726 Sample_02_0782 Blood MEC1 891 5 612 37 4 140 158 TET3,DGUOK-AS1,DGUOK
SE_02_082601186 chr2:73963187-74002378 Sample_02_0826 Stomach gastric tumor 1186 7 1018 53 5 184 186 TET3,DGUOK-AS1,DGUOK
SE_02_081900353 chr2:73963222-73987127 Sample_02_0819 Ovary Mucinous ovarian cancer 353 3 607 36 4 141 186 TET3,DGUOK-AS1,DGUOK
SE_02_023400484 chr2:73963264-74054976 Sample_02_0234 Tonsil Th17 484 18 2347 141 6 405 832 TET3,DGUOK
SE_02_057900773 chr2:73963587-73988869 Sample_02_0579 Blood HEL_sgNeg2 773 7 640 35 5 147 186 TET3,DGUOK-AS1,DGUOK
SE_02_109900047 chr2:73963815-74086257 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 47 45 3228 191 10 458 1002 TET3,DGUOK-AS1,DGUOK,MOB1A,BOLA3,MGC10955
SE_02_098700587 chr2:73963940-74005430 Sample_02_0987 Blood K562_Control_1 587 7 1061 58 5 258 281 TET3,DGUOK-AS1,DGUOK
SE_02_104300292 chr2:73967650-74052256 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 292 57 2160 131 5 401 832 TET3,DGUOK-AS1,DGUOK
SE_02_111900546 chr2:73968000-74005240 Sample_02_1119 Blood KBM7 546 9 947 52 4 257 273 TET3,DGUOK-AS1,DGUOK
SE_02_083500666 chr2:73968129-73986633 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 666 5 462 27 3 138 121 TET3,DGUOK-AS1,DGUOK
SE_02_083600921 chr2:73969124-73986790 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 921 3 430 25 3 139 111 TET3,DGUOK-AS1,DGUOK
SE_02_083301016 chr2:73969534-73986645 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 1016 3 414 25 3 138 84 TET3,DGUOK-AS1,DGUOK
SE_02_043100064 chr2:73969578-74101388 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 64 22 3513 207 9 547 1766 TET3,DGUOK,BOLA3
SE_02_102800373 chr2:73969624-73986771 Sample_02_1028 Blood HL-60_WT 373 4 413 25 3 139 110 TET3,DGUOK-AS1,DGUOK
SE_02_103500224 chr2:73969636-74011928 Sample_02_1035 Mammary gland HCC70_Vehicle 224 8 1083 68 4 293 219 TET3,DGUOK-AS1,DGUOK
SE_02_104800444 chr2:73969898-74032784 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 444 24 1616 110 5 304 219 TET3,DGUOK-AS1,DGUOK
SE_02_122900161 chr2:73969934-74098067 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 161 54 3415 202 9 483 1362 TET3,DGUOK-AS1,BOLA3-AS1,BOLA3,DGUOK,MOB1A,MGC10955
SE_02_059100525 chr2:73970388-74003193 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 525 6 829 42 4 194 184 TET3,DGUOK-AS1,DGUOK
SE_02_098800479 chr2:73970461-74005429 Sample_02_0988 Blood K562_EPZ 479 7 882 49 4 256 219 TET3,DGUOK-AS1,DGUOK
SE_02_054501097 chr2:73970486-74005437 Sample_02_0545 Bone marrow K562 WT 1097 5 882 49 4 256 219 TET3,DGUOK-AS1,DGUOK
SE_02_104200540 chr2:73970532-73997710 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 540 8 684 32 4 161 124 TET3,DGUOK-AS1,DGUOK
SE_02_087500550 chr2:73970576-74044087 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 550 20 1863 119 5 323 219 TET3,DGUOK-AS1,DGUOK
SE_02_113000216 chr2:73970595-74060440 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 216 24 2268 135 6 411 770 TET3,DGUOK-AS1,DGUOK
SE_01_010700886 chr2:73970679-74026579 Sample_01_0107 Esophagus esophagus squamous epithelium 886 10 1436 98 5 298 219 TET3,DGUOK-AS1,DGUOK
SE_02_067200881 chr2:73970736-74011212 Sample_02_0672 Endometrium endometrium cancer_DSG 881 11 1033 60 4 290 219 TET3,DGUOK-AS1,DGUOK
SE_02_125300368 chr2:73970758-74026509 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 368 19 1431 98 5 298 219 TET3,DGUOK-AS1,DGUOK
SE_02_132200731 chr2:73970835-74004441 Sample_02_1322 Connective Tissue HT1080_WT 731 5 836 44 4 252 219 TET3,DGUOK-AS1,DGUOK
SE_02_067400682 chr2:73970875-74010716 Sample_02_0674 Endometrium E1_FA 682 8 1022 58 4 290 219 TET3,DGUOK-AS1,DGUOK
SE_02_132000770 chr2:73970939-74004388 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 770 5 834 43 4 251 219 TET3,DGUOK-AS1,DGUOK
SE_02_072500361 chr2:73970995-73993336 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 361 6 551 27 4 153 124 TET3,DGUOK-AS1,DGUOK
SE_02_104000406 chr2:73971037-74004353 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 406 11 833 43 4 249 219 TET3,DGUOK-AS1,DGUOK
SE_02_104100161 chr2:73971064-73998532 Sample_02_1041 Peripheral blood CD4+ cells_CTCL1135 161 8 689 33 4 161 124 TET3,DGUOK-AS1,DGUOK
SE_02_095600541 chr2:73971359-74045677 Sample_02_0956 Brain IDH1_2658 541 13 1876 120 5 323 219 TET3,DGUOK-AS1,DGUOK
SE_02_143300192 chr2:73971497-74066776 Sample_02_1433 Bone A673 STAG2 null 192 29 2444 146 6 408 770 TET3,DGUOK-AS1,DGUOK
SE_02_050400450 chr2:73974892-74011657 Sample_02_0504 Esophagus KYSE510_1 450 13 949 58 4 274 219 TET3,DGUOK-AS1,DGUOK
SE_02_055500817 chr2:73975377-73987254 Sample_02_0555 Other HAP1_WT 817 2 280 11 3 115 124 TET3,DGUOK-AS1,DGUOK
SE_02_064000742 chr2:73978913-74004347 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 742 7 617 24 3 219 219 TET3,DGUOK-AS1
SE_02_080800823 chr2:73978918-74006050 Sample_02_0808 Ovary RMG1_ARID1A KO 823 22 669 30 3 233 219 TET3,DGUOK-AS1
SE_02_066000730 chr2:73979101-74011810 Sample_02_0660 Mammary gland MCF10DCIS 730 10 826 47 3 263 219 TET3,DGUOK-AS1
SE_02_064200727 chr2:73979140-73986429 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 727 2 152 4 2 95 35 TET3,DGUOK-AS1
SE_02_125400244 chr2:73979205-74011892 Sample_02_1254 Bladder Bladder tumor Basal1 244 10 825 47 3 263 219 TET3,DGUOK-AS1
SE_02_097200639 chr2:73979212-74010381 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 639 7 786 38 3 261 219 TET3,DGUOK-AS1
SE_02_154000688 chr2:73979247-74011827 Sample_02_1540 Nasopharyngeal HK1 688 6 823 47 3 263 219 TET3,DGUOK-AS1
SE_02_094600335 chr2:73979258-73994427 Sample_02_0946 Tongue HN12 335 3 348 8 3 124 124 TET3,DGUOK-AS1
SE_02_064900806 chr2:73979377-73993428 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 806 6 327 8 3 124 124 TET3,DGUOK-AS1
SE_02_088401096 chr2:73979999-73994793 Sample_02_0884 Colon LoVo 1096 2 329 7 3 121 124 TET3,DGUOK-AS1
SE_02_062400251 chr2:73980789-73986582 Sample_02_0624 Mammary gland TAMR_VEH 251 1 103 2 2 103 77 TET3,DGUOK-AS1
SE_02_062500203 chr2:73980844-74012379 Sample_02_0625 Mammary gland WS8_4OHT 203 8 784 45 3 259 219 TET3,DGUOK-AS1
SE_02_136200839 chr2:73980984-74012049 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 839 7 773 45 3 258 219 TET3,DGUOK-AS1
SE_02_062700173 chr2:73980987-74012274 Sample_02_0627 Mammary gland WS8_VEH 173 5 779 45 3 258 219 TET3,DGUOK-AS1
SE_02_113200876 chr2:73981017-73994108 Sample_02_1132 Pancreas KLM1 wt 876 5 285 6 3 119 124 TET3,DGUOK-AS1
SE_02_047700637 chr2:73981132-73986502 Sample_02_0477 Colon intestinal epithelial organoids_139a 637 1 94 2 2 96 57 TET3,DGUOK-AS1
SE_02_137100349 chr2:73982033-74000167 Sample_02_1371 Pancreas Patu899S-untreated 349 4 433 15 2 137 124 TET3,DGUOK-AS1
SE_02_062300302 chr2:73982338-73986594 Sample_02_0623 Mammary gland TAMR_E2 302 1 71 1 1 100 77 TET3,DGUOK-AS1
SE_02_136600841 chr2:73983001-74010174 Sample_02_1366 Pancreas BxPC3-untreated 841 6 685 35 2 249 219 TET3,DGUOK-AS1
SE_02_064801376 chr2:73983017-74011227 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1376 8 711 37 2 252 219 TET3,DGUOK-AS1
SE_02_064500416 chr2:73983104-74011041 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 416 6 706 37 2 252 219 TET3,DGUOK-AS1
SE_02_064700685 chr2:73983150-74010821 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 685 7 704 37 2 252 219 TET3,DGUOK-AS1
SE_02_065201004 chr2:73983343-74010782 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1004 8 698 36 1 252 219 TET3,DGUOK-AS1
SE_02_147000480 chr2:73983353-74011270 Sample_02_1470 Umbilical Vein H441 480 6 702 36 1 252 219 TET3,DGUOK-AS1
SE_02_124800151 chr2:73983366-74012548 Sample_02_1248 Bladder RT4 151 5 744 45 1 254 219 TET3,DGUOK-AS1
SE_02_102700514 chr2:73983390-73986481 Sample_02_1027 Esophagus KYSE180_1 514 2 51 0 0 88 48 TET3,DGUOK-AS1
SE_02_065000656 chr2:73983416-74010840 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 656 7 697 36 1 252 219 TET3,DGUOK-AS1
SE_02_078100440 chr2:73983477-74052365 Sample_02_0781 Lymphoma Pfeiffer_DMSO 440 27 1735 102 2 360 770 TET3,DGUOK-AS1
SE_02_097100545 chr2:73983576-74032851 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 545 11 1261 85 2 264 219 TET3,DGUOK-AS1
SE_02_104602844 chr2:73983678-74006735 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2844 10 572 26 1 226 219 TET3,DGUOK-AS1
SE_02_097900555 chr2:73983712-74020712 Sample_02_0979 Brain JN14-BS1_H3.3K27M 555 12 942 67 2 253 219 TET3,DGUOK-AS1
SE_02_103900489 chr2:73983717-74009289 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 489 4 649 32 1 241 219 TET3,DGUOK-AS1
SE_02_096900648 chr2:73983793-74006856 Sample_02_0969 Brain H3.3K27M_PL637 648 5 580 26 1 226 219 TET3,DGUOK-AS1
SE_02_096700549 chr2:73983829-74006864 Sample_02_0967 Brain H3.3K27M_JN57 549 7 580 26 1 225 219 TET3,DGUOK-AS1
SE_02_097400196 chr2:73983916-74004045 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 196 5 491 18 1 198 219 TET3,DGUOK-AS1
SE_02_143200237 chr2:73983960-74061561 Sample_02_1432 Bone A673 STAG2 WT 237 34 1962 116 3 366 770 TET3,DGUOK-AS1
SE_02_065800206 chr2:73984006-73993930 Sample_02_0658 Tracheobronchial epithelial HTBE_H5N1_18h 206 2 232 4 1 107 124 TET3,DGUOK-AS1
SE_02_119700679 chr2:73984073-74038157 Sample_02_1197 Brain GBM33 679 19 1385 89 2 263 219 TET3,DGUOK-AS1
SE_02_083800333 chr2:73984102-74003301 Sample_02_0838 Embryo hNPCs_WT 333 4 477 18 1 155 200 TET3,DGUOK-AS1
SE_02_117300939 chr2:73997865-74055232 Sample_02_1173 Brain GBM01 939 21 1462 97 1 242 646 TET3,DGUOK-AS1
SE_02_108200921 chr2:73998126-74043945 Sample_02_1082 Retina retina 921 9 1168 87 1 162 95 TET3,DGUOK-AS1
SE_02_074000637 chr2:73999994-74011070 Sample_02_0740 Muscle RH3 637 2 299 23 0 119 95 TET3,DGUOK-AS1
SE_02_006000205 chr2:74001032-74055034 Sample_02_0060 Haematopoietic and lymphoid tissue blood WT-11bp/Jurkat 205 8 1369 90 1 225 646 TET3
SE_02_146800414 chr2:74002098-74084500 Sample_02_1468 Blood HUDEP-2_WT 414 22 2192 140 4 275 816 TET3,DGUOK-AS1
SE_02_092900762 chr2:74002429-74044155 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 762 18 1050 78 1 141 95 TET3,DGUOK-AS1
SE_02_074300459 chr2:74002735-74044189 Sample_02_0743 Embryo ES derived mesoderm_day2 459 11 1048 78 1 134 95 TET3,DGUOK-AS1
SE_02_017600529 chr2:74004846-74054649 Sample_02_0176 Peripheral blood LOUCY 529 6 1273 84 1 146 551 TET3
SE_02_073500314 chr2:74017086-74041787 Sample_02_0735 Lymphoma PAR_Mantle cell lymphoma tissue_THZ1 314 7 624 33 1 17 0 TET3,DGUOK-AS1
SE_02_073400370 chr2:74018899-74039312 Sample_02_0734 Lymphoma PAR_Mantle cell lymphoma tissue_DMSO 370 6 520 26 0 17 0 TET3,DGUOK-AS1
SE_02_073200591 chr2:74019514-74039089 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 591 7 498 25 0 17 0 TET3,DGUOK-AS1
SE_02_073300586 chr2:74019741-74039157 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 586 7 499 25 0 17 0 TET3,DGUOK-AS1
SE_02_061701053 chr2:74020512-74042014 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 1053 10 536 25 0 16 0 TET3,DGUOK-AS1
SE_01_004400840 chr2:74020653-74054444 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 840 5 848 38 0 109 551 TET3
SE_02_098700334 chr2:74023288-74061550 Sample_02_0987 Blood K562_Control_1 334 15 949 47 1 116 551 TET3,DGUOK-AS1,DGUOK,BOLA3
SE_02_109500177 chr2:74024034-74056235 Sample_02_1095 Blood CD34 Erythroid cells_Don002 177 11 793 36 1 107 551 TET3,DGUOK-AS1
SE_02_132900030 chr2:74024057-74083494 Sample_02_1329 Blood CD34+ cell_9d_differentiation 30 30 1585 86 2 160 721 TET3,DGUOK-AS1
SE_02_136300102 chr2:74024137-74096391 Sample_02_1363 Blood Hudep2 102 14 1962 103 4 187 1143 TET3,DGUOK-AS1
SE_02_109600066 chr2:74024171-74100630 Sample_02_1096 Blood CD34 Erythroid cells_Don003 66 17 2088 111 4 210 1374 TET3,BOLA3-AS1,BOLA3,DGUOK-AS1
SE_02_101800170 chr2:74024231-74049594 Sample_02_1018 Erythroblast CD34+ Hematopoietic stem/progenitor cells_12 days 170 12 618 29 0 102 551 TET3,DGUOK-AS1
SE_02_142400307 chr2:74024294-74050006 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 307 7 631 29 0 102 551 TET3,DGUOK-AS1
SE_02_001600231 chr2:74025239-74052162 Sample_02_0016 Blood erythroblasts 231 1 670 32 0 102 551 TET3
SE_02_098800121 chr2:74025704-74083907 Sample_02_0988 Blood K562_EPZ 121 25 1557 85 3 159 721 TET3,DGUOK-AS1,DGUOK,MOB1A,BOLA3,MGC10955
SE_02_104801749 chr2:74079065-74101321 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1749 4 639 33 3 95 903 TET3,BOLA3-AS1,BOLA3
SE_02_104603412 chr2:74080532-74103005 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3412 8 661 31 3 151 1229 TET3,BOLA3-AS1,BOLA3
Genomic distribution of SEs associated with TET3
Genome Browser

The strength of the tissue affected by the gene

Expression of TET3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)