Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000100596
Gene: SPTLC2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr14:77505997-77616637 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_092900159 chr14:77488325-77549885 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 159 49 1748 233 3 39 1064 SPTLC2,ISM2,VIPAS39,AHSA1
SE_02_093000096 chr14:77489029-77565757 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 96 50 2241 301 6 81 1269 SPTLC2,ISM2,VIPAS39,AHSA1
SE_02_139000422 chr14:77507217-77517765 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 422 2 288 32 0 0 570 SPTLC2,VIPAS39,AHSA1,ISM2
SE_02_017201306 chr14:77525947-77614097 Sample_02_0172 Lung IMR-90_quiescent 1306 14 2596 396 6 137 347 SPTLC2,ISM2
SE_02_087500403 chr14:77528117-77616789 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 403 29 2607 396 5 158 494 SPTLC2,ISM2
SE_02_103400043 chr14:77528969-77616870 Sample_02_1034 Blood AML cell 43 16 2581 390 5 159 512 SPTLC2,ISM2
SE_02_111900108 chr14:77533522-77657601 Sample_02_1119 Blood KBM7 108 40 3564 540 8 189 536 SPTLC2,ISM2
SE_02_143100602 chr14:77533583-77617622 Sample_02_1431 Blood T cell 602 11 2450 367 5 163 536 SPTLC2,ISM2
SE_02_146000759 chr14:77533867-77566604 Sample_02_1460 Blood Mutz-3 759 7 1001 143 4 64 205 SPTLC2,ISM2
SE_01_002400399 chr14:77537207-77617170 Sample_01_0024 Blood CD14-positive-monocyte 399 20 2316 341 5 160 536 SPTLC2,ISM2
SE_01_008400851 chr14:77537285-77619372 Sample_01_0084 Spleen spleen 851 16 2359 343 5 169 536 SPTLC2,ISM2
SE_02_074400611 chr14:77541159-77549782 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 611 5 243 34 1 19 0 SPTLC2,ISM2
SE_02_121100737 chr14:77541356-77585133 Sample_02_1211 Brain GBM21 737 9 1297 182 4 96 298 SPTLC2,ISM2
SE_02_120301162 chr14:77541410-77585449 Sample_02_1203 Brain NB1 1162 10 1307 182 4 96 298 SPTLC2,ISM2
SE_02_121300840 chr14:77541621-77613572 Sample_02_1213 Brain GBM31 840 15 2109 312 5 130 347 SPTLC2,ISM2
SE_02_120501253 chr14:77541738-77585393 Sample_02_1205 Brain NB3 1253 15 1298 181 4 96 298 SPTLC2,ISM2,SAMD15,ADCK1,TMED8
SE_02_098900517 chr14:77541761-77623360 Sample_02_0989 Kidney kidney cortex_WT 517 30 2335 349 5 173 536 SPTLC2,ISM2
SE_02_103500266 chr14:77541796-77642199 Sample_02_1035 Mammary gland HCC70_Vehicle 266 41 2838 425 5 182 536 SPTLC2,ISM2
SE_02_046300290 chr14:77542252-77566340 Sample_02_0463 Blood OCI-AML3 cells 290 12 744 100 4 63 205 SPTLC2,ISM2
SE_02_099900431 chr14:77542286-77614121 Sample_02_0999 Lymphoma OCI-LY1_966 431 43 2104 311 5 131 347 SPTLC2,ISM2
SE_02_137800496 chr14:77542525-77614242 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 496 29 2101 311 5 130 347 SPTLC2,ISM2
SE_02_137600989 chr14:77542954-77613607 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 989 32 2080 309 5 122 347 SPTLC2,ISM2
SE_02_134500171 chr14:77552362-77614321 Sample_02_1345 Leukophereses leukophereses_p358 171 21 1799 268 3 103 298 SPTLC2
SE_02_099800452 chr14:77553813-77614808 Sample_02_0998 Lymphoma OCI-LY1_DMSO 452 43 1786 269 3 102 293 SPTLC2
SE_01_005600864 chr14:77558729-77616733 Sample_01_0056 Bone osteoblast 864 8 1661 247 3 93 309 SPTLC2
SE_02_047401357 chr14:77559159-77613562 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1357 16 1559 232 3 71 176 SPTLC2
SE_02_030100725 chr14:77559325-77616877 Sample_02_0301 Neuroblastoma GIMEN 725 13 1641 244 3 94 342 SPTLC2
SE_02_020901037 chr14:77561640-77613615 Sample_02_0209 Lung MRC-5_MRC5_1DPT 1037 9 1484 225 3 71 176 SPTLC2
SE_02_143601267 chr14:77562346-77616640 Sample_02_1436 Liver LSEC-Ctrl 1267 20 1548 236 2 79 270 SPTLC2
SE_02_045100754 chr14:77562392-77613656 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 754 9 1465 221 2 71 163 SPTLC2
SE_02_023200443 chr14:77572320-77614421 Sample_02_0232 Tonsil ILC3 443 15 1178 172 1 53 119 SPTLC2
SE_02_023100408 chr14:77572401-77608957 Sample_02_0231 Tonsil ILC1 408 8 1015 145 1 37 119 SPTLC2
SE_02_053200293 chr14:77572700-77599238 Sample_02_0532 Mammary gland T47D 293 6 731 98 0 35 119 SPTLC2
SE_02_088600735 chr14:77578296-77616645 Sample_02_0886 Skin foreskin_ p63KLF4 735 7 1079 165 1 52 192 SPTLC2
SE_02_008600456 chr14:77578898-77625556 Sample_02_0086 Pancreas CAPAN1 456 4 1259 191 1 95 271 SPTLC2
SE_02_045600531 chr14:77579160-77616820 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 531 13 1058 162 1 62 215 SPTLC2
SE_02_107400267 chr14:77579192-77599791 Sample_02_1074 Lymphoma BC-1 267 4 560 80 0 24 56 SPTLC2
SE_02_158300906 chr14:77579325-77614937 Sample_02_1583 Fetal lung IMR90_empty_GM 906 25 1011 158 1 42 49 SPTLC2
SE_02_095001165 chr14:77579434-77614054 Sample_02_0950 Umbilical vein HUVEC_WT 1165 24 975 150 1 40 49 SPTLC2
SE_02_094900805 chr14:77579437-77612742 Sample_02_0949 Umbilical artery HUAEC_WT 805 20 944 146 1 39 49 SPTLC2
SE_01_008501274 chr14:77580022-77624214 Sample_01_0085 Stomach stomach 1274 7 1198 186 1 80 238 SPTLC2
SE_02_058500679 chr14:77580155-77610718 Sample_02_0585 Umbilical vein HUVEC 0hour 679 19 866 136 1 23 49 SPTLC2
SE_02_104902080 chr14:77580188-77620507 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 2080 23 1106 172 1 76 238 SPTLC2
SE_02_083600205 chr14:77580288-77625460 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 205 15 1225 190 1 88 238 SPTLC2
SE_02_156901373 chr14:77580491-77613236 Sample_02_1569 Endothelial Endothelial cells 1373 7 922 148 1 37 49 SPTLC2
SE_02_083400151 chr14:77580516-77616888 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 151 10 1023 162 1 60 219 SPTLC2
SE_02_082100340 chr14:77580533-77616770 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 340 5 1018 162 1 59 192 SPTLC2
SE_02_083700233 chr14:77580534-77616864 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 233 7 1022 162 1 60 214 SPTLC2
SE_02_049200650 chr14:77580574-77616729 Sample_02_0492 Pharyng Detroit 562_LPS 650 9 1016 162 1 59 178 SPTLC2
SE_02_049100640 chr14:77580575-77616850 Sample_02_0491 Pharyng Detroit 562-Control 640 9 1022 162 1 60 211 SPTLC2
SE_02_143000190 chr14:77580615-77609251 Sample_02_1430 Blood Kasumi-3_mock-infected 190 8 800 126 1 23 49 SPTLC2
SE_02_103300777 chr14:77580670-77616761 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 777 8 1016 162 1 59 190 SPTLC2
SE_02_076601286 chr14:77580670-77624130 Sample_02_0766 Ovary PEO1 1286 15 1180 186 1 80 238 SPTLC2
SE_02_071700065 chr14:77580691-77623426 Sample_02_0717 Pancreas HPAFII_GFP_DOX 65 12 1164 185 1 80 238 SPTLC2
SE_02_083300666 chr14:77580745-77612899 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 666 10 916 146 1 36 49 SPTLC2
SE_02_070800285 chr14:77580801-77613267 Sample_02_0708 Pancreas hF3 organoid 285 7 920 148 1 37 49 SPTLC2
SE_02_057600526 chr14:77580917-77626137 Sample_02_0576 Blood HEL_sgLKB1e2 526 16 1223 193 1 88 238 SPTLC2
SE_02_146000112 chr14:77581098-77616826 Sample_02_1460 Blood Mutz-3 112 12 1013 162 1 57 207 SPTLC2
SE_02_058000634 chr14:77581538-77625646 Sample_02_0580 Blood HEL_sgSIK3e4 634 16 1201 188 1 86 238 SPTLC2
SE_02_061700125 chr14:77581576-77617600 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 125 9 1019 161 1 66 238 SPTLC2
SE_02_133000735 chr14:77582513-77620650 Sample_02_1330 Blood AMU-AML1 735 12 1055 168 1 73 238 SPTLC2
SE_02_083500620 chr14:77582709-77609033 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 620 8 744 121 1 20 49 SPTLC2
SE_02_033600460 chr14:77587302-77618300 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 460 4 863 138 1 66 238 SPTLC2
SE_02_057900510 chr14:77587994-77625716 Sample_02_0579 Blood HEL_sgNeg2 510 12 1024 162 1 85 238 SPTLC2
SE_02_146500125 chr14:77588014-77624012 Sample_02_1465 Ovary CAOV4cis 125 14 983 157 1 77 238 SPTLC2
SE_02_048400370 chr14:77588565-77608715 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 370 10 572 94 1 20 49 SPTLC2
SE_02_084200167 chr14:77589030-77609308 Sample_02_0842 Umbilical cord blood HSPC-derived early erythroid progenitors 167 8 581 95 1 20 49 SPTLC2
SE_02_109500650 chr14:77589095-77617455 Sample_02_1095 Blood CD34 Erythroid cells_Don002 650 9 811 131 1 65 238 SPTLC2
SE_02_071600386 chr14:77589116-77623139 Sample_02_0716 Pancreas SUIT2_GFP 386 10 935 153 1 77 238 SPTLC2
SE_02_048300388 chr14:77589231-77605457 Sample_02_0483 Bone marrow HSCe_22y_CD34+,CD38-,Lineage- 388 5 473 79 1 20 49 SPTLC2
SE_02_062200660 chr14:77589438-77608029 Sample_02_0622 Blood EOL1_Naive 660 7 542 85 1 20 49 SPTLC2
SE_02_146400189 chr14:77590428-77621866 Sample_02_1464 Ovary CAOV4 189 8 873 138 1 73 238 SPTLC2
SE_02_137000597 chr14:77590707-77614941 Sample_02_1370 Pancreas Patu8902-untreated 597 10 706 118 1 36 49 SPTLC2
SE_02_072100173 chr14:77590768-77613973 Sample_02_0721 Pancreas HPAFII_TP63dN_DOX 173 10 673 110 1 34 49 SPTLC2
SE_02_072400514 chr14:77590986-77613137 Sample_02_0724 Pancreatic duct AsPC1_GFP_DOX 514 5 646 106 1 33 49 SPTLC2
SE_02_099000435 chr14:77592088-77611991 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 435 5 579 99 1 20 49 SPTLC2
SE_02_070500443 chr14:77592312-77616680 Sample_02_0705 Pancreas AsPC1 WT 443 4 699 117 1 45 159 SPTLC2
SE_02_048200392 chr14:77592508-77606352 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 392 5 409 70 1 20 49 SPTLC2
SE_02_070400152 chr14:77592670-77603195 Sample_02_0704 Pancreas HPAFII WT 152 4 308 56 1 18 49 SPTLC2
SE_02_105200412 chr14:77592815-77603996 Sample_02_1052 Esophagus JH-EsoAd1 412 5 323 59 1 19 49 SPTLC2
SE_02_003000266 chr14:77593238-77613033 Sample_02_0030 Kidney human kidney proximal tubule cells 266 4 569 98 1 33 49 SPTLC2
SE_02_048500246 chr14:77593259-77608305 Sample_02_0485 Bone marrow HSCe_65y_CD34+,CD38-,Lineage- 246 6 422 73 1 20 49 SPTLC2
SE_02_106700308 chr14:77593754-77615176 Sample_02_1067 Bone SJSA-1 308 9 617 109 1 36 49 SPTLC2
SE_02_108600936 chr14:77614726-77625116 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 936 4 236 30 0 49 189 SPTLC2

Genomic distribution of SEs associated with SPTLC2

The strength of the tissue affected by the gene


Expression of SPTLC2