SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000275043
Gene: SNORD25 Gene type: snoRNA
Strand: - External links:
Genomic region: chr11:62855564-62855632 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_003300172 chr11:62849152-62859081 Sample_01_0033 Embryo H9 172 1 319 26 0 23 534 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD22,SNORD31,SNORD25,SNORD29,NXF1,STX5,WDR74
SE_02_111200920 chr11:62849246-62865527 Sample_02_1112 T lymphocyte THP-6 T-ALL 920 1 477 29 0 26 534 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_021200062 chr11:62849613-62858537 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 62 1 296 25 0 23 534 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD22,SNORD31,SNORD25,SNORD29,NXF1,STX5,WDR74
SE_02_040300323 chr11:62850060-62858849 Sample_02_0403 Mammary gland T-47D_untreat 323 1 290 23 0 23 534 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD22,SNORD31,SNORD25,SNORD29,NXF1,STX5,WDR74
SE_02_004200431 chr11:62850922-62858857 Sample_02_0042 Embryo endodermal CyT49_ES_D0 431 1 265 19 0 23 534 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD22,SNORD31,SNORD25,SNORD29,NXF1,STX5,WDR74
SE_02_032800123 chr11:62850934-62858911 Sample_02_0328 Embryo H9_naive 123 1 266 19 0 23 534 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD22,SNORD31,SNORD25,SNORD29,NXF1,STX5,WDR74
SE_02_075900492 chr11:62851046-62860113 Sample_02_0759 Ovary BIN-67_Control 492 1 296 20 0 23 534 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_012500658 chr11:62851073-62858853 Sample_02_0125 Embryo Embryonic-stem-cells_Primed 658 1 262 19 0 23 534 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD22,SNORD31,SNORD25,SNORD29,NXF1,STX5,WDR74
SE_01_001200241 chr11:62851085-62858753 Sample_01_0012 Lung A549_dexamethasone_1h 241 1 259 19 0 23 534 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD22,SNORD31,SNORD25,SNORD29,NXF1,STX5,WDR74
SE_04_000200512 chr11:62851087-62863425 Sample_04_0002 Blood cold shocked K562 512 1 375 22 0 26 534 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_076000668 chr11:62851138-62859815 Sample_02_0760 Ovary BIN-67_SMARCA4 668 1 282 20 0 23 534 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_153200479 chr11:62851160-62858761 Sample_02_1532 Mammary gland MCF10A 479 1 259 19 0 23 534 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_003600967 chr11:62851198-62856936 Sample_02_0036 Embryo H7 967 1 217 13 0 23 534 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD22,SNORD31,SNORD25,SNORD29,NXF1,STX5,WDR74
SE_02_033000800 chr11:62851235-62857016 Sample_02_0330 Endoderm MHG 800 1 218 13 0 23 534 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD22,SNORD31,SNORD25,SNORD29,NXF1,STX5,WDR74
SE_02_012400365 chr11:62851447-62859124 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 365 1 255 19 0 23 534 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD22,SNORD31,SNORD25,SNORD29,NXF1,STX5,WDR74
SE_04_000100766 chr11:62852306-62863492 Sample_04_0001 Blood heat shocked K562 766 1 335 17 0 26 483 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_058100684 chr11:62852410-62858048 Sample_02_0581 Blood MOLM13_empty_HG 684 1 196 11 0 23 470 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_058200719 chr11:62852456-62858320 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 719 1 203 13 0 23 464 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_057700647 chr11:62852549-62858635 Sample_02_0577 Blood MOLM13_empty 647 1 205 14 0 23 453 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_00_001800241 chr11:62852558-62857157 Sample_00_0018 Dermal fibroblasts iPS-18axian 241 1 171 8 0 23 453 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD22,SNORD31,SNORD25,SNORD29,NXF1,STX5,WDR74
SE_02_101701475 chr11:62852660-62862629 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1475 1 304 15 0 23 441 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_148200562 chr11:62852872-62860811 Sample_02_1482 Bone POE 562 1 250 13 0 23 426 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_128000914 chr11:62852886-62861809 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 914 1 274 14 0 23 424 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_157001439 chr11:62852934-62859223 Sample_02_1570 iPSCs EiPSC 1439 1 202 12 0 23 420 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_116100315 chr11:62852957-62857591 Sample_02_1161 Embryo H1_shZNF587 315 1 168 7 0 20 413 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_116000608 chr11:62853000-62857624 Sample_02_1160 Embryo H1_shLuc 608 1 167 8 0 18 405 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD22,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,STX5
SE_02_148000771 chr11:62853106-62862006 Sample_02_1480 Bone MHH-ES-1 771 1 269 15 0 18 396 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,SNORD22,STX5
SE_02_147600329 chr11:62853166-62862406 Sample_02_1476 Bone EW-1 329 1 276 14 0 18 395 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,SNORD22,STX5
SE_02_049200828 chr11:62853209-62858561 Sample_02_0492 Pharyng Detroit 562_LPS 828 1 180 11 0 18 392 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,SNORD22,STX5
SE_02_075500670 chr11:62853221-62865100 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 670 1 342 14 0 21 391 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,SNORD22,STX5
SE_02_049100854 chr11:62853295-62858491 Sample_02_0491 Pharyng Detroit 562-Control 854 1 175 10 0 18 384 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,SNORD22,STX5
SE_01_003900427 chr11:62853299-62858665 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 427 1 178 11 0 18 383 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD31,SNORD25,SNORD29,NXF1,STX5,SNORD22,WDR74
SE_02_016700840 chr11:62853325-62858923 Sample_02_0167 Mammary gland HCC1954_LCC2 840 1 183 11 0 18 382 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD31,SNORD25,SNORD29,NXF1,STX5,SNORD22,WDR74
SE_02_043600492 chr11:62853327-62857981 Sample_02_0436 Kidney HEK293A_empty-vector_DMSO_6h 492 1 163 7 0 18 382 SNORD26,SNORD30,SNHG1,SNORD27,SNORD28,SLC3A2,SNORD31,SNORD25,SNORD29,NXF1,STX5,SNORD22,WDR74
SE_02_148300398 chr11:62853370-62860501 Sample_02_1483 Bone RD-ES 398 1 226 12 0 17 376 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD31,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,WDR74,SNORD22,STX5
SE_02_075600676 chr11:62853478-62864256 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 676 1 307 14 0 20 367 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,SNORD31,WDR74,SNORD22,STX5
SE_02_147500862 chr11:62853691-62862711 Sample_02_1475 Bone CHLA-25 862 1 264 14 0 17 347 SNORD26,SNORD30,SNORD28,SNORD27,SNHG1,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,SNORD31,WDR74,SNORD22,STX5
SE_02_094800800 chr11:62853874-62858679 Sample_02_0948 Pharyng Detroit562 800 1 151 11 0 17 329 SNORD26,SNHG1,SNORD27,SNORD28,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,SNORD31,WDR74,SNORD30,SNORD22,STX5
SE_02_140500235 chr11:62854032-62858892 Sample_02_1405 Embryonic kidney HEK293_siBAHD1_W667G_mutant 235 1 149 11 0 13 312 SNORD26,SNHG1,SNORD27,SNORD28,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,SNORD31,WDR74,SNORD30,SNORD22,STX5
SE_02_055500295 chr11:62854060-62863423 Sample_02_0555 Other HAP1_WT 295 1 264 14 0 16 312 SNORD26,SNHG1,SNORD27,SNORD28,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,SNORD31,WDR74,SNORD30,SNORD22,STX5
SE_02_075700804 chr11:62854389-62863417 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 804 1 257 14 0 16 272 SNORD26,SNHG1,SNORD27,SNORD28,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,SNORD31,WDR74,SNORD30,SNORD22,STX5
SE_02_075200793 chr11:62854483-62865234 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 793 1 300 14 0 16 264 SNORD26,SNHG1,SNORD27,SNORD28,SNORD25,SLC3A2,SNORD29,RNU2-2P,NXF1,SNORD31,WDR74,SNORD30,SNORD22,STX5
Genomic distribution of SEs associated with SNORD25
Genome Browser

The strength of the tissue affected by the gene

Expression of SNORD25

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)