SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000232352
Gene: SEMA3B-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr3:50266641-50267371 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_096300030 chr3:50234761-50266721 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 30 1 692 43 2 349 2049 GNAI2,SEMA3B-AS1,HYAL1,SEMA3B,IFRD2,MIR6872,MIR5787,GNAT1,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_126600903 chr3:50236109-50266667 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 903 7 664 39 2 341 2026 GNAI2,SEMA3B-AS1,HYAL1,SEMA3B,IFRD2,MIR6872,MIR5787,GNAT1,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_105400242 chr3:50236168-50266724 Sample_02_1054 Esophagus SKGT4 242 13 661 40 2 333 1996 GNAI2,SEMA3B-AS1,HYAL1,SEMA3B,IFRD2,MIR6872,MIR5787,GNAT1,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_086900456 chr3:50236179-50266678 Sample_02_0869 Fibroblast VH10_NO_UV 456 14 658 39 2 333 1995 GNAI2,SEMA3B-AS1,HYAL1,SEMA3B,IFRD2,MIR6872,MIR5787,GNAT1,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_050000991 chr3:50236187-50266943 Sample_02_0500 Fetal lung IMR90_#2 991 9 664 40 2 332 1995 GNAI2,SEMA3B-AS1,HYAL1,SEMA3B,IFRD2,MIR6872,MIR5787,GNAT1,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_086700393 chr3:50236208-50266693 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 393 10 655 39 2 331 1991 GNAI2,SEMA3B-AS1,HYAL1,SEMA3B,IFRD2,MIR6872,MIR5787,GNAT1,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_143800521 chr3:50236228-50266772 Sample_02_1438 Liver LSEC 521 5 659 40 2 331 1985 GNAI2,SEMA3B-AS1,HYAL1,SEMA3B,IFRD2,MIR6872,MIR5787,GNAT1,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_089300395 chr3:50236306-50266722 Sample_02_0893 Heart left ventricle_LV1226 395 9 654 40 2 328 1951 GNAI2,SEMA3B-AS1,HYAL1,SEMA3B,IFRD2,MIR6872,MIR5787,GNAT1,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_142600566 chr3:50238112-50266713 Sample_02_1426 Shoulder fibroblast_341 566 11 624 37 2 297 1883 GNAI2,SEMA3B-AS1,HYAL1,SEMA3B,IFRD2,MIR6872,MIR5787,GNAT1,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_129700533 chr3:50238502-50266700 Sample_02_1297 Lung lung 533 17 615 37 2 279 1883 GNAI2,SEMA3B-AS1,HYAL1,SEMA3B,IFRD2,MIR6872,MIR5787,GNAT1,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_136200845 chr3:50248110-50272520 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 845 9 547 39 1 276 2573 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_136000946 chr3:50248261-50272263 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 946 6 539 38 1 276 2573 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_071100655 chr3:50248365-50271680 Sample_02_0711 Pancreas hN35_organoid 655 8 525 35 1 275 2573 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_088400313 chr3:50248630-50272118 Sample_02_0884 Colon LoVo 313 5 525 37 1 270 2573 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_137100429 chr3:50248715-50271487 Sample_02_1371 Pancreas Patu899S-untreated 429 7 509 34 1 261 2537 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_108200714 chr3:50254061-50271499 Sample_02_1082 Retina retina 714 6 397 25 1 235 2140 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_121100117 chr3:50254554-50271353 Sample_02_1211 Brain GBM21 117 4 382 22 0 230 2110 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,HYAL3,NAT6,SLC38A3,LSMEM2
SE_02_117300059 chr3:50256206-50277391 Sample_02_1173 Brain GBM01 59 1 472 25 0 277 3117 SEMA3B,MIR6872,GNAI2,SEMA3B-AS1,NAT6,HYAL1,HYAL2,IFRD2,MIR5787,LSMEM2,HYAL3
SE_02_121300104 chr3:50256794-50277234 Sample_02_1213 Brain GBM31 104 1 455 24 0 270 2984 SEMA3B,MIR6872,GNAI2,SEMA3B-AS1,NAT6,HYAL1,HYAL2,IFRD2,MIR5787,LSMEM2,HYAL3
SE_02_120500226 chr3:50257085-50275769 Sample_02_1205 Brain NB3 226 1 411 24 0 234 2620 SEMA3B,MIR6872,GNAI2,SEMA3B-AS1,NAT6,HYAL1,HYAL2,IFRD2,MIR5787,LSMEM2,HYAL3
SE_02_119500411 chr3:50257277-50270974 Sample_02_1195 Brain GBM29 411 1 322 17 0 184 1776 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_120300152 chr3:50257389-50271914 Sample_02_1203 Brain NB1 152 1 336 20 0 194 1924 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_120100046 chr3:50257419-50272753 Sample_02_1201 Brain GBM37 46 1 353 21 0 194 1921 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_120200162 chr3:50257519-50272630 Sample_02_1202 Brain GBM38 162 1 350 21 0 194 1905 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_119600146 chr3:50257534-50272826 Sample_02_1196 Brain GBM32 146 1 353 21 0 194 1902 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_118100451 chr3:50257568-50268210 Sample_02_1181 Brain GBM10 451 1 261 12 0 129 1281 GNAI2,SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_120400112 chr3:50257600-50275879 Sample_02_1204 Brain NB2 112 1 404 23 0 232 2568 SEMA3B,MIR6872,GNAI2,SEMA3B-AS1,NAT6,HYAL1,HYAL2,IFRD2,MIR5787,LSMEM2,HYAL3
SE_02_118400281 chr3:50257605-50268409 Sample_02_1184 Brain GBM13 281 1 260 12 0 124 1278 GNAI2,SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_117600206 chr3:50257639-50271378 Sample_02_1176 Brain GBM04 206 1 322 18 0 184 1843 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_117800212 chr3:50257674-50271317 Sample_02_1178 Brain GBM07 212 1 321 18 0 183 1816 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_119400279 chr3:50257721-50271784 Sample_02_1194 Brain GBM28 279 1 328 19 0 186 1872 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_117700624 chr3:50257940-50268318 Sample_02_1177 Brain GBM05 624 1 250 12 0 122 1198 GNAI2,SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_095500193 chr3:50257958-50271871 Sample_02_0955 Brain IDH1_2469 193 6 324 20 0 186 1817 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_085200451 chr3:50258065-50274298 Sample_02_0852 Mammary gland MCF7L-P 451 1 366 21 0 200 2128 SEMA3B,MIR6872,GNAI2,SEMA3B-AS1,NAT6,HYAL1,HYAL2,IFRD2,MIR5787,LSMEM2,HYAL3
SE_02_115900454 chr3:50258065-50274298 Sample_02_1159 Mammary gland MCF7 454 1 366 21 0 200 2128 SEMA3B,MIR6872,GNAI2,SEMA3B-AS1,NAT6,HYAL1,HYAL2,IFRD2,MIR5787,LSMEM2,HYAL3
SE_02_097100403 chr3:50258147-50271377 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 403 4 310 17 0 183 1765 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_074601127 chr3:50258991-50266695 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 1127 4 182 7 0 90 858 GNAI2,SEMA3B-AS1,HYAL1,SEMA3B,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_044600118 chr3:50258992-50272076 Sample_02_0446 Bone osteosarcoma tumor P2 118 1 304 20 0 159 1631 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_100700081 chr3:50259035-50271219 Sample_02_1007 Brain Lateral temporal lobe_14T_Old 81 9 285 16 0 150 1529 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_01_009300631 chr3:50259045-50270751 Sample_01_0093 Aorta ascending aorta 631 1 279 16 0 141 1414 SEMA3B,GNAI2,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,NAT6,HYAL3,LSMEM2
SE_02_081800145 chr3:50259150-50273934 Sample_02_0818 Ovary High-grade serous ovarian cancer 145 1 336 20 0 161 1826 SEMA3B,MIR6872,GNAI2,SEMA3B-AS1,NAT6,HYAL1,HYAL2,IFRD2,MIR5787,LSMEM2,HYAL3
SE_02_052100442 chr3:50259395-50271474 Sample_02_0521 Colon SW480 442 3 282 17 0 142 1503 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_093700112 chr3:50259484-50272253 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 112 1 296 20 0 146 1524 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2,TMEM115
SE_02_055800228 chr3:50259485-50268146 Sample_02_0558 iPSCs FX52 iPSCs mock 228 4 210 11 0 81 905 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_152101013 chr3:50259526-50271562 Sample_02_1521 Skin A375 DMSO 1013 5 278 17 0 145 1497 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_047600540 chr3:50259564-50271501 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 540 6 277 17 0 145 1485 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_074500778 chr3:50259634-50266643 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 778 2 166 7 0 77 740 SEMA3B-AS1,HYAL1,SEMA3B,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_057101086 chr3:50259651-50271388 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 1086 5 275 17 0 142 1465 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_01_010600355 chr3:50259728-50271404 Sample_01_0106 Adrenal gland adrenal gland 54y 355 5 271 17 0 142 1467 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_150301226 chr3:50259763-50271714 Sample_02_1503 Brain SHEP-21N_DOX_2h_NOSPIKE 1226 3 276 18 0 145 1513 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_057000818 chr3:50259782-50271504 Sample_02_0570 Brain LN229_10_mM_glucose 818 7 270 17 0 145 1486 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_074701009 chr3:50260128-50268153 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 1009 1 197 10 0 80 888 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_088600282 chr3:50260228-50274964 Sample_02_0886 Skin foreskin_ p63KLF4 282 1 326 21 0 166 1937 SEMA3B,MIR6872,SEMA3B-AS1,NAT6,HYAL1,HYAL2,IFRD2,MIR5787,GNAI2,LSMEM2,HYAL3
SE_02_078000181 chr3:50260233-50274804 Sample_02_0780 Liver SMMC-7721 181 1 324 21 0 165 1901 SEMA3B,MIR6872,SEMA3B-AS1,NAT6,HYAL1,HYAL2,IFRD2,MIR5787,GNAI2,LSMEM2,HYAL3
SE_02_055900503 chr3:50260279-50266753 Sample_02_0559 iPSCs FX52 iPSCs dC-T 503 3 157 7 0 72 692 SEMA3B-AS1,HYAL1,SEMA3B,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_087200499 chr3:50260290-50271436 Sample_02_0872 Colon HCT116_siCtrl-5FU 499 5 261 16 0 136 1418 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_01_010800284 chr3:50260357-50271536 Sample_01_0108 Adrenal gland adrenal gland_37y 284 5 260 16 0 136 1419 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_111100755 chr3:50262351-50271674 Sample_02_1111 Other HGrC1_SMAD2/3KO 755 1 222 15 0 104 977 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_102900934 chr3:50262444-50271820 Sample_02_1029 Colon HCT116 934 1 226 17 0 104 964 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_118500867 chr3:50262560-50272373 Sample_02_1185 Brain GBM14 867 1 230 17 0 105 942 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_081900345 chr3:50262672-50272127 Sample_02_0819 Ovary Mucinous ovarian cancer 345 1 223 17 0 105 922 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_098900898 chr3:50262811-50273485 Sample_02_0989 Kidney kidney cortex_WT 898 1 245 16 0 109 1012 SEMA3B,MIR6872,SEMA3B-AS1,NAT6,HYAL1,HYAL2,IFRD2,MIR5787,GNAI2,LSMEM2,HYAL3
SE_02_093500186 chr3:50263167-50271669 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 186 1 200 13 0 103 826 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2,TMEM115
SE_01_010100644 chr3:50263253-50272818 Sample_01_0101 Pancreas pancreas_54y 644 1 222 16 0 104 810 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_136500538 chr3:50263425-50272166 Sample_02_1365 Pancreas AsPC1-untreated 538 1 209 16 0 104 782 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_119800267 chr3:50263550-50271863 Sample_02_1198 Brain GBM34 267 1 200 15 0 103 773 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_121000472 chr3:50264069-50271208 Sample_02_1210 Brain GBM17 472 1 162 11 0 100 676 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_02_044700484 chr3:50264823-50271148 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 484 1 145 9 0 91 661 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
SE_00_005800516 chr3:50264944-50268889 Sample_00_0058 Stomach stomach 34y 516 1 94 5 0 24 191 SEMA3B,SEMA3B-AS1,HYAL1,IFRD2,MIR6872,MIR5787,GNAI2,NAT6,HYAL3,LSMEM2
Genomic distribution of SEs associated with SEMA3B-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of SEMA3B-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)