SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000200624
Gene: RNA5S6 Gene type: rRNA
Strand: - External links:
Genomic region: chr1:228621447-228621565 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_099200039 chr1:228608099-228633889 Sample_02_0992 Mammary gland MDA-MB-231_Par 39 1 56 0 0 0 0 RNA5S11,MIR7641-2,RNA5S2,RNA5S3,RNA5S4,RNA5S1,RNA5S6,RNA5S10,RNA5S9,RHOU,RNA5S5,DUSP5P1,RNA5S15
SE_02_084100025 chr1:228608184-228648557 Sample_02_0841 Blood THP-1_untr 25 1 214 13 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15,RNF187
SE_02_085900019 chr1:228608199-228649391 Sample_02_0859 Prostate PC3 19 1 235 14 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15,RNF187,HIST3H2A
SE_02_088400063 chr1:228608205-228649622 Sample_02_0884 Colon LoVo 63 1 241 14 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_055500232 chr1:228608206-228620579 Sample_02_0555 Other HAP1_WT 232 1 8 0 0 0 0 MIR7641-2,RNA5S2,RNA5S3,RNA5S4,RNA5S1,RNA5S6,RHOU,RNA5S5,RNA5S9,RNA5S10,DUSP5P1,RNA5S15
SE_02_057700004 chr1:228608213-228648871 Sample_02_0577 Blood MOLM13_empty 4 1 223 13 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_139100164 chr1:228608219-228649649 Sample_02_1391 Peripheral blood FE-PD_ALK- 164 1 241 14 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_111900006 chr1:228608233-228649247 Sample_02_1119 Blood KBM7 6 1 232 14 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_044600084 chr1:228608239-228647534 Sample_02_0446 Bone osteosarcoma tumor P2 84 1 169 10 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_058200004 chr1:228608240-228649050 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 4 1 226 13 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_058100003 chr1:228608251-228648837 Sample_02_0581 Blood MOLM13_empty_HG 3 1 222 13 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_045300154 chr1:228608256-228649614 Sample_02_0453 Neuroblastoma SJNB3 154 1 241 14 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_058400003 chr1:228608259-228649351 Sample_02_0584 Lung H1299 WT 3 1 234 14 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_138900002 chr1:228608265-228649665 Sample_02_1389 Peripheral blood SUP-M2_ALK+ 2 1 241 14 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_098100010 chr1:228608270-228647424 Sample_02_0981 Brain H3.3K27M-KO_BT245-C4P6 10 1 160 9 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_102700002 chr1:228608276-228647752 Sample_02_1027 Esophagus KYSE180_1 2 1 180 11 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_138700071 chr1:228608276-228649594 Sample_02_1387 Peripheral blood Mac-1_ALK- 71 1 241 14 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_097300062 chr1:228608278-228625744 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 62 1 29 0 0 0 0 RNA5S11,MIR7641-2,RNA5S2,RNA5S3,RNA5S4,RNA5S1,RNA5S6,RNA5S10,RHOU,RNA5S5,RNA5S9,DUSP5P1,RNA5S15
SE_02_047900004 chr1:228608281-228648606 Sample_02_0479 Head and neck SCC25 4 1 215 13 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_138800014 chr1:228608289-228649351 Sample_02_1388 Peripheral blood JB6_ALK+ 14 1 234 14 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_139000005 chr1:228608314-228648356 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 5 1 210 12 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_057400004 chr1:228608320-228649025 Sample_02_0574 Blood MOLM-13_sgNeg2 4 1 225 13 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_057500005 chr1:228608328-228649086 Sample_02_0575 Blood MOLM13_sgLKB1e2 5 1 227 13 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_110600026 chr1:228608332-228648490 Sample_02_1106 Brain NGP 26 1 211 12 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_147500022 chr1:228608332-228648729 Sample_02_1475 Bone CHLA-25 22 1 219 13 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_099500012 chr1:228608337-228648710 Sample_02_0995 Blood MOLM-13_empty vector 12 1 217 13 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_057800005 chr1:228608337-228649218 Sample_02_0578 Blood MOLM-13_sgSIK3e4 5 1 232 14 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_148000001 chr1:228608344-228649253 Sample_02_1480 Bone MHH-ES-1 1 1 233 14 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_148800146 chr1:228608349-228620738 Sample_02_1488 Bone TC-71 146 1 9 0 0 0 0 MIR7641-2,RNA5S2,RNA5S3,RNA5S4,RNA5S1,RNA5S6,RHOU,RNA5S5,RNA5S9,RNA5S10,DUSP5P1,RNA5S15
SE_02_055200166 chr1:228608364-228620703 Sample_02_0552 Other SYO1 shCt 166 1 8 0 0 0 0 MIR7641-2,RNA5S2,RNA5S3,RNA5S4,RNA5S1,RNA5S6,RHOU,RNA5S5,RNA5S9,RNA5S10,DUSP5P1,RNA5S15
SE_02_070200004 chr1:228608365-228626577 Sample_02_0702 Bone David_TC71 4 1 32 0 0 0 0 RNA5S11,MIR7641-2,RNA5S2,RNA5S3,RNA5S4,RNA5S1,RNA5S6,RNA5S10,RHOU,RNA5S5,RNA5S9,DUSP5P1,RNA5S15
SE_02_099300020 chr1:228608365-228642189 Sample_02_0993 Blood MOLM-13_empty 20 1 88 1 0 0 0 RNA5S11,MIR7641-2,RNA5S2,RNA5S3,RNA5S4,RNA5S1,RNA5S6,RNA5S10,RNA5S9,RHOU,RNA5S5,DUSP5P1,RNA5S15
SE_02_113600667 chr1:228608368-228620556 Sample_02_1136 Bone U2OS-anaphase/telophase 667 1 8 0 0 0 0 MIR7641-2,RNA5S2,RNA5S3,RNA5S4,RNA5S1,RNA5S6,RHOU,RNA5S5,RNA5S9,RNA5S10,DUSP5P1,RNA5S15
SE_02_106100007 chr1:228608374-228649677 Sample_02_1061 Bone TC71_WT 7 1 241 14 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_121600385 chr1:228608393-228626563 Sample_02_1216 Blood Jurkat ZBTB1 KO 385 1 31 0 0 0 0 RNA5S11,MIR7641-2,RNA5S2,RNA5S3,RNA5S4,RNA5S1,RNA5S6,RNA5S10,RHOU,RNA5S5,RNA5S9,DUSP5P1,RNA5S15
SE_02_106000125 chr1:228608413-228620560 Sample_02_1060 Bone TC71_SA2 KO 125 1 6 0 0 0 0 MIR7641-2,RNA5S2,RNA5S3,RNA5S4,RNA5S1,RNA5S6,RHOU,RNA5S5,RNA5S9,RNA5S10,DUSP5P1,RNA5S15
SE_02_111200069 chr1:228608470-228647264 Sample_02_1112 T lymphocyte THP-6 T-ALL 69 1 149 8 0 0 150 RNA5S11,MIR7641-2,RNA5S1,DUSP5P1,RNA5S2,RNA5S3,RNA5S4,RNA5S6,RHOU,RNA5S10,RNA5S9,RNA5S5,RNA5S15
SE_02_099000425 chr1:228614666-228624800 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 425 1 21 0 0 0 0 RNA5S11,MIR7641-2,RNA5S4,RNA5S1,RNA5S6,RNA5S10,RNA5S2,RNA5S3,RHOU,RNA5S5,RNA5S9,DUSP5P1,RNA5S15
SE_02_093500559 chr1:228616298-228629314 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 559 1 48 0 0 0 0 RNA5S11,MIR7641-2,RNA5S1,RNA5S6,RNA5S10,RNA5S9,RNA5S2,RNA5S3,RNA5S4,RHOU,RNA5S5,DUSP5P1,RNA5S15
SE_02_064000233 chr1:228616791-228625672 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 233 1 21 0 0 0 0 RNA5S11,MIR7641-2,RNA5S1,RNA5S6,RNA5S10,RNA5S2,RNA5S3,RNA5S4,RHOU,RNA5S5,RNA5S9,DUSP5P1,RNA5S15
SE_02_063500024 chr1:228618258-228626588 Sample_02_0635 Synovial sarcoma HSSYII_Untreated 24 1 24 0 0 0 0 RNA5S11,MIR7641-2,RNA5S6,RNA5S10,RNA5S1,RNA5S2,RNA5S3,RNA5S4,RHOU,RNA5S5,RNA5S9,DUSP5P1,RNA5S15
SE_02_144500424 chr1:228618300-228626916 Sample_02_1445 Adipose SW872_TAZ4SA 424 1 42 0 0 0 0 RNA5S11,MIR7641-2,RNA5S6,RNA5S10,RNA5S1,RNA5S2,RNA5S3,RNA5S4,RHOU,RNA5S5,RNA5S9,DUSP5P1,RNA5S15
SE_02_068200514 chr1:228618804-228632104 Sample_02_0682 Blood Kasumi-1 514 1 48 0 0 0 0 RNA5S11,MIR7641-2,RNA5S6,RNA5S10,RNA5S9,RNA5S1,RNA5S2,RNA5S3,RNA5S4,RHOU,RNA5S5,DUSP5P1,RNA5S15
Genomic distribution of SEs associated with RNA5S6
Genome Browser

The strength of the tissue affected by the gene

Expression of RNA5S6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)