SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000132155
Gene: RAF1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:12583601-12664125 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_089201181 chr3:12553895-12594695 Sample_02_0892 Heart left ventricle_LV1215 1181 13 1098 109 10 105 1252 RAF1,MKRN2,MKRN2OS
SE_02_158300711 chr3:12553898-12589191 Sample_02_1583 Fetal lung IMR90_empty_GM 711 21 945 95 9 87 1094 RAF1,MKRN2,MKRN2OS
SE_02_090200814 chr3:12554051-12595777 Sample_02_0902 Heart left ventricle_LV1558 814 12 1120 110 10 105 1252 RAF1,MKRN2,MKRN2OS
SE_02_090301168 chr3:12555920-12594538 Sample_02_0903 Heart left ventricle_DCM_LV1009 1168 10 1036 99 9 105 1252 RAF1,MKRN2,MKRN2OS
SE_02_088901307 chr3:12555967-12597941 Sample_02_0889 Heart left ventricle_LV1183 1307 14 1132 109 10 105 1252 RAF1,MKRN2,MKRN2OS
SE_02_090701453 chr3:12556142-12601871 Sample_02_0907 Heart left ventricle_DCM_LV1223 1453 10 1244 117 10 130 1373 RAF1,MKRN2,MKRN2OS
SE_02_090800436 chr3:12558739-12665066 Sample_02_0908 Heart left ventricle_DCM_LV1262 436 30 2850 298 13 210 1683 RAF1,MKRN2,MKRN2OS
SE_02_104901459 chr3:12574498-12662260 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1459 42 2389 243 11 184 1290 RAF1,MKRN2,MKRN2OS
SE_02_103600467 chr3:12593084-12715399 Sample_02_1036 Mammary gland HCC70_XY018 467 52 3443 368 9 117 559 RAF1,MKRN2OS,MKRN2,TMEM40
SE_02_023401040 chr3:12598893-12665162 Sample_02_0234 Tonsil Th17 1040 17 1772 198 3 114 559 RAF1,MKRN2
SE_02_142900625 chr3:12610186-12664952 Sample_02_1429 Blood GM12878_WT 625 16 1490 172 3 65 279 RAF1
SE_02_080800380 chr3:12610378-12662315 Sample_02_0808 Ovary RMG1_ARID1A KO 380 42 1418 162 3 64 83 RAF1
SE_02_153000063 chr3:12612387-12720816 Sample_02_1530 Peripheral blood neutrophils_0BA0X 63 31 3061 338 7 60 241 RAF1,TMEM40,RPL32,MKRN2OS,MKRN2
SE_02_032100366 chr3:12612529-12665310 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 366 10 1426 167 3 54 241 RAF1
SE_02_023200622 chr3:12612558-12665003 Sample_02_0232 Tonsil ILC3 622 9 1414 166 3 54 241 RAF1
SE_02_032000295 chr3:12612638-12665278 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 295 10 1421 167 3 54 241 RAF1
SE_01_005200111 chr3:12612656-12710609 Sample_01_0052 Blood neutrophil 111 13 2780 306 7 54 241 RAF1,TMEM40
SE_02_010400162 chr3:12612689-12683148 Sample_02_0104 Blood neutrophils 162 16 1966 232 3 54 241 RAF1
SE_02_074701060 chr3:12612989-12662324 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 1060 30 1335 155 3 54 45 RAF1
SE_02_122401030 chr3:12613004-12662317 Sample_02_1224 Bone marrow normal plasma cell 1030 21 1334 155 3 54 45 RAF1
SE_02_101701248 chr3:12613579-12674825 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1248 15 1694 210 3 54 241 RAF1
SE_02_074601112 chr3:12613654-12662219 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 1112 24 1313 150 3 54 45 RAF1
SE_01_009400600 chr3:12614161-12665414 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 600 14 1379 160 3 54 241 RAF1
SE_01_007600701 chr3:12614817-12665750 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 701 6 1365 155 3 52 241 RAF1
SE_02_130200548 chr3:12614959-12664894 Sample_02_1302 Lymphoma RL DMSO 548 13 1341 151 3 52 241 RAF1
SE_02_092700077 chr3:12614977-12710631 Sample_02_0927 Peripheral blood neutrophils_US 77 31 2709 291 7 52 241 RAF1,TMEM40,RPL32,MKRN2OS,MKRN2
SE_02_152900048 chr3:12615376-12720149 Sample_02_1529 Peripheral blood neutrophils_0BC75 48 29 2950 317 7 56 241 RAF1,TMEM40,RPL32,MKRN2OS,MKRN2
SE_02_091000442 chr3:12615670-12665201 Sample_02_0910 Heart left ventricle_DCM_LV1275 442 22 1326 148 3 52 241 RAF1
SE_02_098901581 chr3:12619903-12665387 Sample_02_0989 Kidney kidney cortex_WT 1581 12 1220 136 3 39 196 RAF1
SE_02_075700221 chr3:12620358-12676111 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 221 10 1540 188 3 39 196 RAF1
SE_01_002400479 chr3:12620382-12683279 Sample_01_0024 Blood CD14-positive-monocyte 479 12 1757 202 3 39 196 RAF1
SE_02_130400879 chr3:12620641-12664177 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 879 14 1163 130 3 39 153 RAF1
SE_02_053301157 chr3:12620666-12662275 Sample_02_0533 Blood vessel Circle of Willis_54y 1157 14 1121 122 3 39 0 RAF1
SE_01_008600984 chr3:12621042-12665751 Sample_01_0086 Thoracic aorta thoracic-aorta 984 5 1202 134 2 39 196 RAF1
SE_02_090700517 chr3:12621188-12665301 Sample_02_0907 Heart left ventricle_DCM_LV1223 517 14 1188 131 2 39 196 RAF1
SE_02_090400592 chr3:12621231-12665479 Sample_02_0904 Heart left ventricle_DCM_LV1028 592 12 1192 132 2 39 196 RAF1
SE_02_089100373 chr3:12621303-12706069 Sample_02_0891 Heart left ventricle_LV1202 373 25 2407 258 6 39 196 RAF1
SE_02_091600407 chr3:12621320-12665043 Sample_02_0916 Heart left ventricle_DCM_LV1392 407 10 1176 130 2 39 196 RAF1
SE_02_089200320 chr3:12621337-12763889 Sample_02_0892 Heart left ventricle_LV1215 320 33 4102 406 7 100 1175 RAF1,TMEM40,CAND2
SE_02_091200576 chr3:12621352-12665115 Sample_02_0912 Heart left ventricle_DCM_LV1300 576 18 1173 130 2 39 196 RAF1
SE_00_002100708 chr3:12621963-12665143 Sample_00_0021 Lung lung_3y 708 12 1162 128 1 39 196 RAF1,TE40
SE_01_008100643 chr3:12621968-12665726 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 643 7 1181 131 1 39 196 RAF1
SE_02_090200792 chr3:12622069-12665319 Sample_02_0902 Heart left ventricle_LV1558 792 12 1168 129 1 39 196 RAF1
SE_02_090500534 chr3:12622108-12665105 Sample_02_0905 Heart left ventricle_DCM_LV1033 534 14 1156 126 1 39 196 RAF1
SE_01_009700473 chr3:12622115-12665536 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 473 14 1171 128 1 39 196 RAF1
SE_02_091300723 chr3:12622205-12665547 Sample_02_0913 Heart left ventricle_DCM_LV1304 723 15 1168 128 1 39 196 RAF1
SE_02_089700328 chr3:12622279-12705821 Sample_02_0897 Heart left ventricle_LV1325 328 20 2371 254 5 39 196 RAF1
SE_02_088900505 chr3:12622325-12705938 Sample_02_0889 Heart left ventricle_LV1183 505 15 2376 254 5 39 196 RAF1
SE_02_090100668 chr3:12622368-12665067 Sample_02_0901 Heart left ventricle_LV1471 668 22 1148 124 1 39 196 RAF1
SE_02_090300626 chr3:12624265-12665197 Sample_02_0903 Heart left ventricle_DCM_LV1009 626 16 1116 124 1 39 196 RAF1
SE_02_089800775 chr3:12624461-12665086 Sample_02_0898 Heart left ventricle_LV1356 775 16 1109 123 1 39 196 RAF1
SE_01_008500874 chr3:12624487-12683067 Sample_01_0085 Stomach stomach 874 7 1661 189 1 39 196 RAF1
SE_02_091101058 chr3:12625072-12662334 Sample_02_0911 Heart left ventricle_DCM_LV1290 1058 14 1025 112 1 39 0 RAF1
SE_02_137500810 chr3:12625123-12662309 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 810 20 1022 112 1 39 0 RAF1
SE_02_090600696 chr3:12625151-12665254 Sample_02_0906 Heart left ventricle_DCM_LV1072 696 14 1092 122 1 39 196 RAF1
SE_02_092200705 chr3:12625324-12665464 Sample_02_0922 Heart fetal heart_PCW10_12434 705 10 1097 123 1 39 196 RAF1,TMEM40
SE_01_009800558 chr3:12625478-12695043 Sample_01_0098 Heart left ventricle_51y 558 14 1983 220 3 39 196 RAF1
SE_02_091700491 chr3:12625593-12665026 Sample_02_0917 Heart left ventricle_DCM_LV1433 491 16 1078 121 1 39 196 RAF1
SE_01_009301047 chr3:12627270-12665538 Sample_01_0093 Aorta ascending aorta 1047 11 1049 114 1 39 196 RAF1
SE_02_089300720 chr3:12627348-12665206 Sample_02_0893 Heart left ventricle_LV1226 720 11 1037 113 1 39 196 RAF1
SE_02_092300656 chr3:12628497-12665313 Sample_02_0923 Heart fetal heart_PCW10_12522 656 7 1010 110 1 39 196 RAF1,TMEM40
SE_02_108301144 chr3:12629326-12665071 Sample_02_1083 Macula macula 1144 14 979 108 1 37 196 RAF1
SE_02_141600821 chr3:12629992-12664986 Sample_02_1416 Brain SF9402 821 9 967 107 1 37 196 RAF1
SE_02_056901006 chr3:12630367-12664136 Sample_02_0569 Periodontal ligament mesenchymal stem cell 1006 11 935 105 1 37 148 RAF1
SE_02_153100083 chr3:12636490-12710243 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 83 16 2124 221 5 34 196 RAF1,TMEM40,RPL32,MKRN2OS,MKRN2
SE_02_026100800 chr3:12641857-12665465 Sample_02_0261 Osteoblastic hFOB_differentiated 800 3 640 73 1 34 196 RAF1
SE_02_026300820 chr3:12641984-12665314 Sample_02_0263 Osteoblastic hFOB_undifferentiated 820 3 633 71 1 34 196 RAF1
SE_01_008801321 chr3:12642038-12665357 Sample_01_0088 Tibial nerve tibial-nerve 1321 4 634 71 1 34 196 RAF1
SE_02_026200847 chr3:12642123-12665333 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 847 2 628 70 1 34 196 RAF1
SE_02_127901299 chr3:12642307-12665313 Sample_02_1279 Bone Mesenchymal stem cells 1299 6 614 69 1 34 196 RAF1
SE_02_010100508 chr3:12642361-12683466 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 508 6 1175 137 1 34 196 RAF1
SE_02_049901286 chr3:12642874-12665169 Sample_02_0499 Fetal lung IMR90 IR Senescence 1286 7 600 68 1 34 196 RAF1
SE_02_075300329 chr3:12642908-12675995 Sample_02_0753 Embryo ES-derived progenitors_FG type 329 7 935 120 1 34 196 RAF1
SE_02_088600552 chr3:12642931-12731154 Sample_02_0886 Skin foreskin_ p63KLF4 552 22 2538 265 6 42 196 RAF1,TMEM40
SE_02_092800336 chr3:12643066-12710146 Sample_02_0928 Peripheral blood neutrophils_Ecoli 336 16 1949 207 5 34 196 RAF1,TMEM40,RPL32,MKRN2OS,MKRN2
SE_02_081600706 chr3:12643070-12682810 Sample_02_0816 Ovary Clear cell ovarian cancer 706 16 1138 133 1 34 196 RAF1
SE_02_032700752 chr3:12643745-12671895 Sample_02_0327 Liver hepatocytes_d6 752 6 773 101 1 34 196 RAF1
SE_02_032501112 chr3:12643781-12671975 Sample_02_0325 Liver hepatocytes_d1 1112 6 773 101 1 34 196 RAF1
SE_02_076000729 chr3:12643881-12665152 Sample_02_0760 Ovary BIN-67_SMARCA4 729 5 567 64 1 34 196 RAF1
SE_02_028600287 chr3:12644035-12665345 Sample_02_0286 Liver HuH7_IL-1alpha_1h 287 3 573 63 1 34 196 RAF1
SE_00_001400593 chr3:12644241-12672093 Sample_00_0014 Heart left ventricle heart-left-ventricle 593 4 766 100 1 33 196 RAF1
SE_02_032600772 chr3:12644788-12671789 Sample_02_0326 Liver hepatocytes_d3 772 4 741 99 1 32 196 RAF1
SE_02_133200365 chr3:12644895-12682799 Sample_02_1332 Blood Monomac6_CTRL 365 9 1085 127 1 32 196 RAF1
SE_02_028500281 chr3:12645575-12665343 Sample_02_0285 Liver HuH7_untreat 281 2 530 62 1 32 196 RAF1
SE_02_127300260 chr3:12647156-12702860 Sample_02_1273 Cervix HeLa 260 13 1604 176 5 32 196 RAF1
SE_02_047600628 chr3:12647165-12675219 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 628 8 791 104 1 32 196 RAF1
SE_02_055500833 chr3:12650044-12664950 Sample_02_0555 Other HAP1_WT 833 5 396 40 0 28 196 RAF1
SE_02_103200426 chr3:12652995-12699601 Sample_02_1032 Head and neck SCC1 JQ1 426 12 1347 150 2 28 196 RAF1
SE_02_012400120 chr3:12654274-12704704 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 120 8 1463 157 4 28 196 RAF1
SE_02_075600699 chr3:12654701-12676044 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 699 3 610 83 0 28 196 RAF1
SE_02_075400378 chr3:12654722-12675968 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 378 5 607 83 0 28 196 RAF1
SE_02_141300698 chr3:12656173-12683023 Sample_02_1413 Muscle RH4_sgBRG1 698 12 773 90 0 28 196 RAF1
SE_02_092101211 chr3:12656476-12665615 Sample_02_0921 Heart embryonic heart_CS22 1211 5 234 27 0 28 196 RAF1
SE_02_074500415 chr3:12656498-12674712 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 415 4 523 73 0 28 196 RAF1
SE_02_037000506 chr3:12657168-12665668 Sample_02_0370 Skeletal muscle RH4 506 3 219 26 0 28 196 RAF1
SE_02_078000441 chr3:12657523-12705134 Sample_02_0780 Liver SMMC-7721 441 16 1391 149 4 28 196 RAF1
SE_02_061001032 chr3:12658235-12665031 Sample_02_0610 Liposarcoma MLS 1765-92 1032 2 172 19 0 28 196 RAF1
SE_00_004600839 chr3:12658368-12695017 Sample_00_0046 Heart right ventricle_34y 839 11 1072 116 1 28 196 RAF1
SE_02_008500179 chr3:12658376-12704672 Sample_02_0085 Oral cavity KB_IL-1alpha_5Z-7-oxozeaenol 179 8 1355 144 4 28 196 RAF1
SE_02_008400193 chr3:12658391-12704918 Sample_02_0084 Oral cavity KB_5Z-7-oxozeaenol 193 8 1364 144 4 28 196 RAF1
SE_02_058900384 chr3:12658546-12703918 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 384 15 1337 143 4 28 196 RAF1
SE_02_032200797 chr3:12661457-12701742 Sample_02_0322 Colon Caco-2 797 5 1177 135 4 0 196 RAF1
SE_02_004500701 chr3:12661831-12664987 Sample_02_0045 Embryo endodermal CyT49_ES_D7 701 2 75 11 0 0 196 RAF1
SE_02_085200575 chr3:12661850-12665570 Sample_02_0852 Mammary gland MCF7L-P 575 1 92 13 0 0 196 RAF1
SE_02_115900578 chr3:12661850-12665599 Sample_02_1159 Mammary gland MCF7 578 1 93 14 0 0 196 RAF1
SE_02_064500661 chr3:12662048-12665203 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 661 1 78 12 0 0 196 RAF1
SE_00_002500978 chr3:12662050-12665174 Sample_00_0025 Muscle of leg muscle-of-leg 978 1 78 12 0 0 196 RAF1
SE_00_000600509 chr3:12662080-12683719 Sample_00_0006 Blood CD14-positive-monocyte 509 3 653 80 0 0 196 RAF1
SE_00_002600770 chr3:12662179-12665182 Sample_00_0026 Muscle of trunk muscle-of-trunk 770 1 75 12 0 0 196 RAF1
SE_00_003100585 chr3:12662235-12704618 Sample_00_0031 Placenta placenta 585 5 1254 136 4 0 196 RAF1,CAND2
SE_00_004000762 chr3:12662446-12682859 Sample_00_0040 Spleen spleen_30y 762 4 614 76 0 0 196 RAF1
Genomic distribution of SEs associated with RAF1
Genome Browser

The strength of the tissue affected by the gene

Expression of RAF1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)