SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000125534
Gene: PPDPF Gene type: protein_coding
Strand: + External links:
Genomic region: chr20:63520765-63522206 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077600557 chr20:63482816-63524992 Sample_02_0776 Pancreas EndoC-BH1 557 7 1481 178 3 152 1891 PPDPF,EEF1A2,KCNQ2,SRMS,PTK6,C20ORF195,HELZ2
SE_02_000200426 chr20:63517395-63524200 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 426 1 268 28 1 17 489 PPDPF,PRIC285,PTK6,KCNQ2,C20ORF195,SRMS,EEF1A2
SE_02_115100307 chr20:63517494-63524323 Sample_02_1151 Mammary gland MCF-7_UNTR 307 1 268 28 1 17 489 PPDPF,KCNQ2,SRMS,EEF1A2,PTK6,C20ORF195,HELZ2
SE_02_039601853 chr20:63517626-63523864 Sample_02_0396 Skin NHEK-D 1853 1 237 25 1 17 489 PPDPF,PRIC285,PTK6,KCNQ2,C20ORF195,SRMS,EEF1A2
SE_02_029300442 chr20:63518118-63522965 Sample_02_0293 Pancreatic L3-6_4SC-202 442 1 181 18 0 15 489 PPDPF,PRIC285,PTK6,KCNQ2,C20ORF195,SRMS,EEF1A2
SE_02_056500056 chr20:63518425-63545737 Sample_02_0565 Mammary gland MCF7L-P_E2_16h 56 9 1133 120 1 106 2704 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2
SE_02_157800248 chr20:63518777-63546310 Sample_02_1578 Mammary gland MCF7_DAC+455 248 5 1127 112 1 113 2704 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2,DIDO1,TCFL5,STMN3,C20orf195
SE_02_125800095 chr20:63518930-63547418 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 95 7 1177 116 1 119 2813 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2
SE_02_035800072 chr20:63519165-63547322 Sample_02_0358 Colon LS180 72 3 1161 116 1 117 2786 PPDPF,PTK6,SRMS,PRIC285,KCNQ2,C20ORF195,EEF1A2
SE_02_024600196 chr20:63519193-63540034 Sample_02_0246 Mammary gland MCF-7_estradiol 196 2 840 90 1 55 1931 PPDPF,PTK6,PRIC285,KCNQ2,C20ORF195,SRMS,EEF1A2
SE_02_062700277 chr20:63519210-63523595 Sample_02_0627 Mammary gland WS8_VEH 277 2 149 13 0 15 489 PPDPF,KCNQ2,SRMS,EEF1A2,PTK6,C20ORF195,HELZ2
SE_02_088400139 chr20:63519269-63547078 Sample_02_0884 Colon LoVo 139 4 1138 115 1 115 2732 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2
SE_02_035600258 chr20:63519300-63546622 Sample_02_0356 Colon Sw480 258 4 1116 112 1 113 2704 PPDPF,PTK6,SRMS,PRIC285,KCNQ2,C20ORF195,EEF1A2
SE_02_056800122 chr20:63519321-63545725 Sample_02_0568 Mammary gland MCF7L_E2_4h 122 10 1090 112 1 106 2704 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2
SE_02_062500328 chr20:63519324-63523405 Sample_02_0625 Mammary gland WS8_4OHT 328 1 135 12 0 15 489 PPDPF,KCNQ2,SRMS,EEF1A2,PTK6,C20ORF195,HELZ2
SE_02_066700167 chr20:63519376-63522861 Sample_02_0667 Mammary gland MCF7_FA 167 1 122 10 0 15 489 PPDPF,KCNQ2,SRMS,EEF1A2,PTK6,C20ORF195,HELZ2
SE_02_036100344 chr20:63519386-63539833 Sample_02_0361 Colon HT29_DMSO 344 3 826 88 1 55 1931 PPDPF,PTK6,PRIC285,KCNQ2,C20ORF195,SRMS,EEF1A2
SE_01_008501304 chr20:63519425-63543172 Sample_01_0085 Stomach stomach 1304 3 981 106 1 96 2452 PPDPF,PTK6,SRMS,PRIC285,KCNQ2,C20ORF195,EEF1A2
SE_02_035300141 chr20:63519438-63546976 Sample_02_0353 Colon HT29 141 3 1129 114 1 115 2716 PPDPF,PTK6,SRMS,PRIC285,KCNQ2,C20ORF195,EEF1A2
SE_02_152500282 chr20:63519478-63547068 Sample_02_1525 Stomach N87 DMSO 282 6 1133 114 1 115 2728 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2
SE_02_081901148 chr20:63519489-63523496 Sample_02_0819 Ovary Mucinous ovarian cancer 1148 1 136 12 0 15 489 PPDPF,KCNQ2,SRMS,EEF1A2,PTK6,C20ORF195,HELZ2
SE_00_004200163 chr20:63519579-63543247 Sample_00_0042 Stomach stomach_30y 163 2 981 106 1 96 2478 PPDPF,PTK6,SRMS,PRIC285,KCNQ2,C20ORF195,EEF1A2
SE_01_010700440 chr20:63519600-63539124 Sample_01_0107 Esophagus esophagus squamous epithelium 440 4 797 87 1 55 1931 PTK6,PPDPF,KCNQ2,SRMS,EEF1A2,C20ORF195,HELZ2
SE_00_001100445 chr20:63519741-63539140 Sample_00_0011 Esophagus esophagus 445 4 790 87 1 55 1931 PPDPF,PTK6,PRIC285,KCNQ2,C20ORF195,SRMS,EEF1A2
SE_00_004100995 chr20:63520111-63539470 Sample_00_0041 Stomach stomach_3y 995 2 795 87 1 55 1931 PPDPF,PTK6,PRIC285,KCNQ2,C20ORF195,SRMS,EEF1A2
SE_02_113100213 chr20:63522005-63546021 Sample_02_1131 Pancreas T3M4 wt 213 11 1011 106 1 96 2281 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2
SE_00_003500389 chr20:63522008-63546156 Sample_00_0035 Sigmoid colon sigmoid-colon 389 4 1013 106 1 98 2281 PPDPF,PTK6,SRMS,PRIC285,KCNQ2,C20ORF195,EEF1A2
Genomic distribution of SEs associated with PPDPF
Genome Browser

The strength of the tissue affected by the gene

Expression of PPDPF

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)