SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000140650
Gene: PMM2 Gene type: protein_coding
Strand: + External links:
Genomic region: chr16:8788823-8849325 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_103601885 chr16:8784997-8827696 Sample_02_1036 Mammary gland HCC70_XY018 1885 16 1487 183 4 40 766 TMEM186,PMM2,CARHSP1
SE_02_142901163 chr16:8795530-8827265 Sample_02_1429 Blood GM12878_WT 1163 9 1088 124 4 33 702 TMEM186,PMM2,CARHSP1
SE_02_148200602 chr16:8796560-8822850 Sample_02_1482 Bone POE 602 10 899 101 3 27 541 TMEM186,PMM2,CARHSP1
SE_02_104700174 chr16:8800682-8968780 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 174 66 6749 525 8 330 4114 CARHSP1,USP7,PMM2,TMEM186
SE_02_143200430 chr16:8805415-8891934 Sample_02_1432 Bone A673 STAG2 WT 430 33 3651 382 3 77 2016 CARHSP1,PMM2,TMEM186,USP7
SE_02_046600340 chr16:8806506-8888388 Sample_02_0466 Adipose visceral adipocytes 340 44 3468 372 3 70 1975 CARHSP1,PMM2,TMEM186,USP7
SE_02_143300345 chr16:8806538-8892503 Sample_02_1433 Bone A673 STAG2 null 345 30 3649 380 3 71 2070 CARHSP1,USP7,PMM2,TMEM186
SE_02_057300404 chr16:8817032-8872107 Sample_02_0573 Blood Nalm6_1 404 13 2509 306 0 60 1741 CARHSP1,PMM2,TMEM186
SE_02_125200303 chr16:8818322-8894411 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 303 25 3335 334 1 95 2068 CARHSP1,USP7,PMM2,TMEM186
SE_02_124900444 chr16:8818673-8872402 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 444 20 2485 305 0 60 1741 CARHSP1,PMM2,TMEM186
SE_02_074200114 chr16:8818683-8865620 Sample_02_0742 Embryo ESCs_day0 114 10 2245 293 0 38 1265 CARHSP1,PMM2,TMEM186
SE_02_116000115 chr16:8818869-8865264 Sample_02_1160 Embryo H1_shLuc 115 10 2220 290 0 38 1265 CARHSP1,PMM2,TMEM186,USP7
SE_02_138500138 chr16:8821060-8889735 Sample_02_1385 Other iPSCs 138 12 3047 313 1 65 1741 CARHSP1,PMM2,TMEM186,USP7
SE_02_101500204 chr16:8821406-8869729 Sample_02_1015 Embryo H9_ Undifferentiated 204 14 2296 286 0 60 1741 CARHSP1,PMM2,TMEM186,USP7
SE_02_156700142 chr16:8822402-8869009 Sample_02_1567 iPSCs CiPSC 142 15 2229 279 0 54 1669 CARHSP1,PMM2,TMEM186
SE_02_088600573 chr16:8824718-8895005 Sample_02_0886 Skin foreskin_ p63KLF4 573 20 3161 308 1 98 2171 CARHSP1,USP7,PMM2,TMEM186
SE_02_003600480 chr16:8826926-8833384 Sample_02_0036 Embryo H7 480 2 250 29 0 0 0 PMM2,CARHSP1,TMEM186
SE_02_157000116 chr16:8828135-8878896 Sample_02_1570 iPSCs EiPSC 116 21 2417 273 0 60 1741 CARHSP1,PMM2,TMEM186
SE_02_157200069 chr16:8828148-8886392 Sample_02_1572 iPSCs FiPSC 69 20 2693 279 0 65 1741 CARHSP1,PMM2,TMEM186
SE_01_010701324 chr16:8828189-8879297 Sample_01_0107 Esophagus esophagus squamous epithelium 1324 16 2424 272 0 60 1741 CARHSP1,PMM2,TMEM186
SE_02_101700963 chr16:8828243-8869778 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 963 15 2075 258 0 60 1741 CARHSP1,PMM2,TMEM186,USP7
SE_02_101600422 chr16:8828287-8869786 Sample_02_1016 Embryo H9_Mesendoderm_24h 422 10 2074 258 0 60 1741 CARHSP1,PMM2,TMEM186,USP7
SE_02_001700356 chr16:8828361-8833185 Sample_02_0017 Embryo H9_ESC 356 1 206 22 0 0 0 PMM2,CARHSP1,TMEM186
SE_02_053000513 chr16:8828366-8885304 Sample_02_0530 Mammary gland MCF10A 513 14 2653 276 0 63 1741 CARHSP1,PMM2,TMEM186
SE_02_117200447 chr16:8829101-8838028 Sample_02_1172 Embryo H9 WT 447 4 466 62 0 0 0 PMM2,TMEM186,CARHSP1
SE_02_055900477 chr16:8829250-8843795 Sample_02_0559 iPSCs FX52 iPSCs dC-T 477 6 695 106 0 0 0 PMM2,TMEM186,CARHSP1
SE_02_104600691 chr16:8829358-8898232 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 691 28 3129 288 1 106 2327 CARHSP1,USP7,PMM2,TMEM186
SE_02_004200448 chr16:8829845-8833373 Sample_02_0042 Embryo endodermal CyT49_ES_D0 448 1 155 14 0 0 0 PMM2,CARHSP1,TMEM186
SE_02_056000515 chr16:8830079-8837719 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 515 4 414 54 0 0 0 PMM2,TMEM186,CARHSP1
SE_00_001200236 chr16:8830220-8833163 Sample_00_0012 Embryo H1-hESC 236 2 132 9 0 0 0 PMM2,CARHSP1,TMEM186
SE_02_055800424 chr16:8830254-8850742 Sample_02_0558 iPSCs FX52 iPSCs mock 424 8 995 144 0 7 356 PMM2,TMEM186,CARHSP1
SE_02_073900969 chr16:8830502-8872327 Sample_02_0739 Blood Nalm6 969 8 2083 248 0 60 1741 CARHSP1,PMM2,TMEM186
SE_02_067800591 chr16:8830665-8836506 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 591 5 352 45 0 0 0 PMM2,TMEM186,CARHSP1
SE_02_075500954 chr16:8831960-8865224 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 954 9 1771 230 0 38 1265 CARHSP1,PMM2,TMEM186
SE_02_122901311 chr16:8832917-8871603 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1311 9 1955 241 0 60 1741 CARHSP1,PMM2,TMEM186
SE_02_075200929 chr16:8832990-8864831 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 929 9 1700 226 0 38 1265 CARHSP1,PMM2,TMEM186
SE_02_089600910 chr16:8834476-8869077 Sample_02_0896 Heart left ventricle_LV1294 910 16 1752 222 0 55 1691 CARHSP1,PMM2,TMEM186
SE_01_010400216 chr16:8834501-8869551 Sample_01_0104 Lung upper lobe of left lung 216 10 1768 223 0 60 1741 CARHSP1,PMM2,TMEM186
SE_02_063801007 chr16:8834631-8865053 Sample_02_0638 Fibroblast HGPS fibroblast_LMNA_AG11498 1007 15 1598 215 0 38 1265 CARHSP1,PMM2,TMEM186
SE_02_090001067 chr16:8835270-8869028 Sample_02_0900 Heart left ventricle_LV1452 1067 11 1700 213 0 54 1676 CARHSP1,PMM2,TMEM186
SE_02_075300433 chr16:8836056-8866628 Sample_02_0753 Embryo ES-derived progenitors_FG type 433 6 1572 200 0 38 1265 CARHSP1,PMM2,TMEM186
SE_02_116800496 chr16:8842213-8887720 Sample_02_1168 Biliary H69_TGF Vehicle_2 496 19 2070 182 1 65 1741 CARHSP1,PMM2,TMEM186,USP7
SE_02_061600178 chr16:8842244-8888863 Sample_02_0616 Liposarcoma liposarcoma cells_LP6 178 21 2108 184 1 65 1741 CARHSP1,PMM2,TMEM186,USP7
SE_02_113100665 chr16:8842337-8880365 Sample_02_1131 Pancreas T3M4 wt 665 11 1796 173 0 60 1741 CARHSP1,PMM2,TMEM186
SE_02_143701192 chr16:8844333-8888345 Sample_02_1437 Liver LSEC-TNF 1192 15 1987 164 1 65 1741 CARHSP1,PMM2,TMEM186,USP7
SE_02_047900537 chr16:8845484-8886483 Sample_02_0479 Head and neck SCC25 537 17 1857 151 0 65 1741 CARHSP1,PMM2,TMEM186
SE_02_143801089 chr16:8845870-8889175 Sample_02_1438 Liver LSEC 1089 14 1933 154 1 65 1741 CARHSP1,PMM2,TMEM186,USP7
SE_02_144500951 chr16:8845919-8871944 Sample_02_1445 Adipose SW872_TAZ4SA 951 8 1299 132 0 60 1741 CARHSP1,PMM2,TMEM186
SE_02_104900105 chr16:8845992-8965893 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 105 103 4868 287 5 303 3768 CARHSP1,USP7,PMM2,TMEM186
SE_02_128000544 chr16:8846758-8886501 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 544 8 1801 141 0 65 1741 CARHSP1,PMM2,TMEM186
SE_02_092200820 chr16:8846826-8869092 Sample_02_0922 Heart fetal heart_PCW10_12434 820 4 1159 118 0 58 1702 CARHSP1,PMM2,TMEM186
SE_02_103500212 chr16:8846949-8927314 Sample_02_1035 Mammary gland HCC70_Vehicle 212 32 3381 202 3 250 3226 CARHSP1,USP7,PMM2,TMEM186
SE_02_111100979 chr16:8847028-8888464 Sample_02_1111 Other HGrC1_SMAD2/3KO 979 25 1853 143 1 65 1741 CARHSP1,PMM2,TMEM186,USP7
SE_02_143601043 chr16:8847361-8888823 Sample_02_1436 Liver LSEC-Ctrl 1043 16 1860 142 1 63 1741 CARHSP1,PMM2,TMEM186,USP7
SE_02_032500899 chr16:8847396-8872881 Sample_02_0325 Liver hepatocytes_d1 899 5 1270 123 0 58 1741 CARHSP1,PMM2,TMEM186
SE_02_032700473 chr16:8847464-8872984 Sample_02_0327 Liver hepatocytes_d6 473 5 1274 122 0 58 1741 CARHSP1,PMM2,TMEM186
SE_01_009000437 chr16:8847489-8869506 Sample_01_0090 Lung upper-lobe-of-left-lung 437 1 1147 114 0 58 1741 CARHSP1,PMM2,TMEM186
SE_02_039600503 chr16:8847622-8904536 Sample_02_0396 Skin NHEK-D 503 21 2462 163 1 160 2727 CARHSP1,USP7,PMM2,TMEM186
SE_02_061500876 chr16:8847632-8886676 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 876 14 1780 136 0 62 1729 CARHSP1,PMM2,TMEM186
SE_02_132100389 chr16:8847674-8888231 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 389 9 1832 139 1 62 1719 CARHSP1,PMM2,USP7
SE_02_114500549 chr16:8847743-8889472 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 549 11 1871 141 1 61 1711 CARHSP1,PMM2,USP7
SE_02_046501082 chr16:8847757-8886437 Sample_02_0465 Adipose subcutaneous adipocytes 1082 14 1761 136 0 60 1706 CARHSP1,PMM2
SE_02_116900888 chr16:8848193-8889554 Sample_02_1169 Biliary H69_TGF beta_16h_2 888 19 1849 138 1 59 1623 CARHSP1,PMM2,USP7
SE_01_006900505 chr16:8848194-8892799 Sample_01_0069 Adrenal gland adrenal-gland 505 8 1994 144 1 61 1754 CARHSP1,USP7,PMM2
SE_02_048000534 chr16:8848212-8884747 Sample_02_0480 Gingival epithelial HGEP 534 12 1666 130 0 55 1621 CARHSP1,PMM2
SE_02_158400595 chr16:8848242-8889286 Sample_02_1584 Brain U87 GBM_Mock 595 11 1832 137 1 58 1612 CARHSP1,PMM2,USP7
SE_02_132000891 chr16:8848254-8857255 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 891 3 504 59 0 12 695 CARHSP1,PMM2
SE_02_116600828 chr16:8848265-8889479 Sample_02_1166 Biliary H69_TGF beta_16h_1 828 16 1838 137 1 58 1610 CARHSP1,PMM2,USP7
SE_02_064000363 chr16:8848273-8886769 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 363 14 1746 132 0 58 1609 CARHSP1,PMM2,USP7
SE_02_132201027 chr16:8848284-8852647 Sample_02_1322 Connective Tissue HT1080_WT 1027 2 217 26 0 0 222 PMM2,CARHSP1
SE_02_076201812 chr16:8848284-8887116 Sample_02_0762 Podocyte podocyte_CTL 1812 11 1758 134 1 58 1607 CARHSP1,PMM2,USP7
SE_02_151000135 chr16:8848307-8913958 Sample_02_1510 Lung H3122_LR_Pano 135 23 2798 173 1 185 2820 CARHSP1,USP7,PMM2
SE_02_116700548 chr16:8848312-8886736 Sample_02_1167 Biliary H69_TGF Vehicle_1 548 16 1745 132 0 58 1602 CARHSP1,PMM2,USP7
SE_00_005100343 chr16:8848445-8871717 Sample_00_0051 Adrenal gland adrenal gland 30y 343 18 1183 115 0 53 1575 CARHSP1,PMM2
SE_02_107300576 chr16:8848481-8880513 Sample_02_1073 Keratinocyte keratinocytes stem cell 576 7 1506 126 0 53 1564 CARHSP1,PMM2
SE_02_064200574 chr16:8848510-8886611 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 574 10 1730 132 0 58 1561 CARHSP1,PMM2
SE_02_104800569 chr16:8848533-8884751 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 569 11 1656 130 0 54 1559 CARHSP1,PMM2
SE_02_147500538 chr16:8848538-8885865 Sample_02_1475 Bone CHLA-25 538 9 1706 131 0 58 1558 CARHSP1,PMM2
SE_02_076600678 chr16:8848560-8886268 Sample_02_0766 Ovary PEO1 678 9 1715 132 0 58 1553 CARHSP1,PMM2
SE_02_001500106 chr16:8848588-8870186 Sample_02_0015 Liver HepG2_shNS 106 3 1118 113 0 53 1547 CARHSP1,PMM2
SE_02_136500510 chr16:8848695-8884746 Sample_02_1365 Pancreas AsPC1-untreated 510 10 1648 129 0 54 1523 CARHSP1,PMM2
SE_02_064300782 chr16:8848703-8880387 Sample_02_0643 Mammary gland MDA-MB-436 782 8 1490 125 0 53 1522 CARHSP1,PMM2
SE_02_148200284 chr16:8848778-8880430 Sample_02_1482 Bone POE 284 10 1488 125 0 53 1514 CARHSP1,PMM2
SE_01_008200789 chr16:8848813-8872093 Sample_01_0082 Right lobe of liver right-lobe-of-liver 789 4 1178 114 0 53 1505 CARHSP1,PMM2
SE_02_036200090 chr16:8848955-8872663 Sample_02_0362 Haematopoietic and lymphoid tissue REH 90 3 1190 116 0 53 1489 CARHSP1,PMM2
SE_02_032600672 chr16:8848962-8872858 Sample_02_0326 Liver hepatocytes_d3 672 3 1193 116 0 53 1488 CARHSP1,PMM2
SE_02_075800173 chr16:8848994-8893753 Sample_02_0758 Peripheral blood REH 173 14 1994 142 1 68 1722 CARHSP1,USP7,PMM2
SE_01_010100912 chr16:8849129-8878884 Sample_01_0101 Pancreas pancreas_54y 912 10 1414 123 0 53 1452 CARHSP1,PMM2
SE_02_125100421 chr16:8849260-8894169 Sample_02_1251 Bone marrow RS4_11_AZD1775 _10h 421 20 1989 141 1 88 1717 CARHSP1,USP7,PMM2
Genomic distribution of SEs associated with PMM2
Genome Browser

The strength of the tissue affected by the gene

Expression of PMM2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)