SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000185619
Gene: PCGF3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr4:705748-770640 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_006900490 chr4:680061-728899 Sample_01_0069 Adrenal gland adrenal-gland 490 8 1861 141 3 62 1810 MYL5,MFSD7,PCGF3,PDE6B,ATP5I
SE_02_101701019 chr4:680189-730315 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1019 10 1900 144 3 63 1786 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_101601034 chr4:680774-708065 Sample_02_1016 Embryo H9_Mesendoderm_24h 1034 5 1089 67 2 62 1662 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_081000033 chr4:680807-708115 Sample_02_0810 Mammary gland T47D noSerum 33 7 1092 69 2 62 1662 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_119900645 chr4:680843-708071 Sample_02_1199 Brain GBM35 645 4 1087 67 2 62 1662 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_143200445 chr4:680852-730453 Sample_02_1432 Bone A673 STAG2 WT 445 23 1874 144 3 63 1662 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_143300179 chr4:680971-775541 Sample_02_1433 Bone A673 STAG2 null 179 39 3847 344 7 148 3167 MFSD7,MYL5,PCGF3,PDE6B,ATP5I,LOC100129917
SE_02_146400254 chr4:681001-708334 Sample_02_1464 Ovary CAOV4 254 9 1091 69 2 62 1629 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_103500319 chr4:681042-747761 Sample_02_1035 Mammary gland HCC70_Vehicle 319 23 2501 212 5 88 2429 MFSD7,MYL5,PCGF3,PDE6B,ATP5I,LOC100129917
SE_02_081601580 chr4:681049-707849 Sample_02_0816 Ovary Clear cell ovarian cancer 1580 5 1073 67 2 62 1618 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_080900116 chr4:681110-708033 Sample_02_0809 Mammary gland T47D Serum 116 6 1077 67 2 62 1605 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_082601694 chr4:681199-709274 Sample_02_0826 Stomach gastric tumor 1694 9 1116 73 2 62 1571 MFSD7,MYL5,PCGF3,PDE6B,ATP5I
SE_02_129900395 chr4:683731-708427 Sample_02_1299 Liver liver 395 5 969 68 2 42 964 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_129700473 chr4:683791-707821 Sample_02_1297 Lung lung 473 5 949 65 2 42 946 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_080800673 chr4:684228-719251 Sample_02_0808 Ovary RMG1_ARID1A KO 673 17 1294 103 3 42 915 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_061300572 chr4:686597-726476 Sample_02_0613 Liposarcoma MLPS_T1 572 9 1486 123 3 30 442 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_146000925 chr4:686656-707840 Sample_02_1460 Blood Mutz-3 925 3 815 61 2 28 434 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_108700362 chr4:686808-708154 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 362 8 821 63 2 28 393 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_108600334 chr4:686843-707958 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 334 5 810 61 2 28 387 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_109300493 chr4:686866-708047 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 493 7 809 61 2 28 374 MFSD7,PCGF3,PDE6B,MYL5,ATP5I
SE_02_104700089 chr4:698021-805095 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 89 60 4257 484 7 150 2892 CPLX1,LOC100129917,PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_062200463 chr4:698683-730562 Sample_02_0622 Blood EOL1_Naive 463 14 1167 112 2 17 206 PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_065700592 chr4:699127-708160 Sample_02_0657 Tracheobronchial epithelial HTBE_H1N1_06h 592 2 369 37 1 16 188 PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_064501453 chr4:699128-708100 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1453 2 364 36 1 16 188 PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_122500398 chr4:699340-726761 Sample_02_1225 Bone marrow RAJI 398 6 1028 98 2 16 188 PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_147900246 chr4:699461-730241 Sample_02_1479 Bone EW-7 246 12 1133 110 2 17 188 PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_104900196 chr4:699793-795918 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 196 60 3909 451 6 150 2892 CPLX1,LOC100129917,PCGF3,PDE6B,MYL5,ATP5I,MFSD7
SE_02_039601823 chr4:703070-707716 Sample_02_0396 Skin NHEK-D 1823 1 176 23 0 16 188 PCGF3,PDE6B,MYL5,MFSD7,ATP5I
SE_02_138300430 chr4:705742-774976 Sample_02_1383 Pancreas Pancreatic cancer cells_THZ1 430 27 2825 285 5 99 1661 PCGF3,LOC100129917,MYL5,ATP5I,MFSD7
SE_02_138100384 chr4:705748-779303 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 384 29 2998 305 5 99 1658 PCGF3,MYL5,ATP5I,MFSD7,LOC100129917,CPLX1
SE_02_138200283 chr4:705749-792572 Sample_02_1382 Pancreas Pancreatic cancer cells_Triptolide 283 32 3549 422 5 135 2758 CPLX1,LOC100129917,PCGF3,MYL5,ATP5I,MFSD7
SE_02_110500399 chr4:705749-797097 Sample_02_1105 Brain NBL-S 399 30 3693 435 5 147 2828 CPLX1,LOC100129917,PCGF3,MYL5,ATP5I,MFSD7
SE_02_034400179 chr4:705774-727430 Sample_02_0344 Blood CD34 179 3 767 78 1 13 121 PCGF3,MFSD7,MYL5,ATP5I
SE_02_034500184 chr4:705804-727612 Sample_02_0345 Blood AML8 184 4 772 79 1 11 111 PCGF3,MFSD7,MYL5,ATP5I
SE_02_114500606 chr4:708335-732373 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 606 14 853 83 1 6 233 PCGF3,LOC100129917,MYL5,ATP5I,MFSD7
SE_00_000301109 chr4:709791-728990 Sample_00_0003 Adrenal gland adrenal-gland_97d 1109 5 679 67 1 0 0 PCGF3,MFSD7,MYL5,ATP5I
SE_02_115000135 chr4:713002-752751 Sample_02_1150 Kidney WT 9-12_Nrf2 knockout_vehicle 135 8 1439 148 2 26 810 PCGF3,LOC100129917,MYL5,ATP5I,MFSD7
SE_01_010600465 chr4:717826-727235 Sample_01_0106 Adrenal gland adrenal gland 54y 465 4 366 32 0 0 0 PCGF3,MYL5,ATP5I,MFSD7
SE_02_103601258 chr4:717837-747777 Sample_02_1036 Mammary gland HCC70_XY018 1258 15 1106 111 2 26 810 PCGF3,LOC100129917,MYL5,ATP5I,MFSD7
SE_02_104600860 chr4:734800-795118 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 860 15 2553 323 4 119 2202 CPLX1,LOC100129917,PCGF3,MFSD7
SE_02_117301053 chr4:742608-795651 Sample_02_1173 Brain GBM01 1053 16 2253 284 2 113 2071 CPLX1,LOC100129917,PCGF3
SE_02_103000498 chr4:747619-805121 Sample_02_1030 Colon DKO 498 26 2453 306 3 108 1894 CPLX1,LOC100129917,PCGF3
SE_02_003200385 chr4:748401-799818 Sample_02_0032 Pancreas pancreatic-islets-M 385 11 2240 278 2 108 1894 CPLX1,LOC100129917,PCGF3
SE_02_027500603 chr4:751329-796294 Sample_02_0275 Retina FW14 603 8 2036 250 2 108 1894 CPLX1,LOC100129917,PCGF3
SE_02_108200665 chr4:751756-795783 Sample_02_1082 Retina retina 665 11 2007 249 2 108 1894 CPLX1,LOC100129917,PCGF3
SE_02_004700897 chr4:761535-782889 Sample_02_0047 Pancreatic endoderm IIDP/donor790 897 6 1034 112 1 54 1131 LOC100129917,PCGF3,CPLX1
SE_02_110600244 chr4:761695-927793 Sample_02_1106 Brain NGP 244 64 6522 758 13 250 5360 CPLX1,GAK,LOC100129917,PCGF3,DGKQ,TMEM175
SE_02_109200483 chr4:762310-793753 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 483 12 1441 211 1 100 1833 CPLX1,LOC100129917,PCGF3
SE_02_076500262 chr4:762316-795606 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 262 15 1501 214 1 102 1833 CPLX1,LOC100129917,PCGF3
SE_02_109300517 chr4:762402-793640 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 517 10 1426 207 1 100 1833 CPLX1,LOC100129917,PCGF3
SE_02_044401005 chr4:762823-795898 Sample_02_0444 Bone osteosarcoma tumor P10 1005 15 1480 210 1 102 1833 CPLX1,LOC100129917,PCGF3
SE_02_108700453 chr4:763012-793634 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 453 12 1389 202 1 100 1833 CPLX1,LOC100129917,PCGF3
SE_02_155500424 chr4:765330-786822 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 424 6 957 122 1 79 1558 CPLX1,LOC100129917,PCGF3
SE_02_146001244 chr4:765469-788310 Sample_02_1460 Blood Mutz-3 1244 4 1020 142 1 79 1589 CPLX1,LOC100129917,PCGF3
SE_02_111201087 chr4:765676-800267 Sample_02_1112 T lymphocyte THP-6 T-ALL 1087 6 1418 201 1 97 1761 CPLX1,LOC100129917,PCGF3
Genomic distribution of SEs associated with PCGF3
Genome Browser

The strength of the tissue affected by the gene

Expression of PCGF3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)