Gene overview
| Strategies/Algorithm: | overlap | Ensembl ID: | ENSG00000015676 |
| Gene: | NUDCD3 | Gene type: | protein_coding |
| Strand: | - | External links: |
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| Genomic region: | chr7:44379119-44490658 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_104601550 | chr7:44348440-44406138 |
Sample_02_1046 | Peripheral blood | CD4+ cells_CTCL1145 | 1550 | 21 | 1407 | 111 | 1 | 0 | 1192 | NUDCD3,CAMK2B |
| SE_02_104801406 | chr7:44361005-44400574 |
Sample_02_1048 | Peripheral blood | CD4+ cell_UNTREATED | 1406 | 8 | 989 | 84 | 1 | 0 | 1117 | NUDCD3,CAMK2B |
| SE_02_143700342 | chr7:44367530-44418473 |
Sample_02_1437 | Liver | LSEC-TNF | 342 | 18 | 1266 | 99 | 1 | 0 | 1181 | NUDCD3,CAMK2B |
| SE_02_122800413 | chr7:44367833-44385075 |
Sample_02_1228 | Mammary gland | MDA-MB-231_2 | 413 | 9 | 437 | 38 | 1 | 0 | 710 | NUDCD3,CAMK2B |
| SE_02_041901045 | chr7:44367850-44386503 |
Sample_02_0419 | Pectoralis major muscle | LHCN-M2_nodox | 1045 | 12 | 460 | 39 | 1 | 0 | 902 | NUDCD3,CAMK2B |
| SE_02_048101053 | chr7:44368035-44388955 |
Sample_02_0481 | Mammary gland | MDA-MB231 | 1053 | 13 | 525 | 47 | 1 | 0 | 864 | NUDCD3,CAMK2B |
| SE_02_083100168 | chr7:44368287-44409297 |
Sample_02_0831 | Umblical vein | HUVECs_TNF0min | 168 | 21 | 1020 | 83 | 1 | 0 | 1000 | NUDCD3,CAMK2B |
| SE_02_113700437 | chr7:44368398-44387435 |
Sample_02_1137 | Retinal Pigmented Epithelial | RPE1-interphase | 437 | 9 | 472 | 38 | 1 | 0 | 789 | NUDCD3,CAMK2B |
| SE_02_021600887 | chr7:44368401-44389210 |
Sample_02_0216 | Skin | NHEK_scramble | 887 | 5 | 521 | 46 | 1 | 0 | 789 | NUDCD3,CAMK2B |
| SE_02_077100775 | chr7:44368430-44385582 |
Sample_02_0771 | Ovary | OVCA429_shGRHL2 | 775 | 6 | 434 | 38 | 1 | 0 | 668 | NUDCD3,CAMK2B |
| SE_02_058500186 | chr7:44368438-44408936 |
Sample_02_0585 | Umbilical vein | HUVEC 0hour | 186 | 20 | 1008 | 82 | 1 | 0 | 970 | NUDCD3,CAMK2B |
| SE_02_132201170 | chr7:44368601-44384823 |
Sample_02_1322 | Connective Tissue | HT1080_WT | 1170 | 4 | 412 | 36 | 1 | 0 | 510 | NUDCD3,CAMK2B |
| SE_02_143800818 | chr7:44368619-44397288 |
Sample_02_1438 | Liver | LSEC | 818 | 9 | 734 | 65 | 1 | 0 | 860 | NUDCD3,CAMK2B |
| SE_02_099000604 | chr7:44369246-44387243 |
Sample_02_0990 | Breast cancer brain metastatic variant | MDA-MB-231 BrM2 | 604 | 6 | 435 | 34 | 1 | 0 | 677 | NUDCD3,CAMK2B |
| SE_02_077000797 | chr7:44369310-44434514 |
Sample_02_0770 | Ovary | OVCA429_shLuc | 797 | 20 | 1591 | 127 | 2 | 0 | 1101 | NUDCD3,CAMK2B |
| SE_02_076301171 | chr7:44372121-44398052 |
Sample_02_0763 | Podocyte | podocyte_DEX | 1171 | 5 | 686 | 59 | 1 | 0 | 780 | NUDCD3,CAMK2B |
| SE_02_084600365 | chr7:44372182-44388412 |
Sample_02_0846 | Mammary gland | MDA-MB-231_untreat | 365 | 8 | 429 | 37 | 1 | 0 | 669 | NUDCD3,CAMK2B |
| SE_02_076200986 | chr7:44372286-44419909 |
Sample_02_0762 | Podocyte | podocyte_CTL | 986 | 10 | 1203 | 93 | 1 | 0 | 900 | NUDCD3,CAMK2B |
| SE_02_135300884 | chr7:44372326-44387421 |
Sample_02_1353 | Mammary gland | MDA-MB-231-Erbeta_TNFa | 884 | 8 | 402 | 31 | 1 | 0 | 669 | NUDCD3,CAMK2B |
| SE_02_143600968 | chr7:44372349-44387792 |
Sample_02_1436 | Liver | LSEC-Ctrl | 968 | 10 | 407 | 34 | 1 | 0 | 669 | NUDCD3,CAMK2B |
| SE_02_135101038 | chr7:44372455-44387129 |
Sample_02_1351 | Mammary gland | MDA-MB-231-Erbeta_vehicle | 1038 | 6 | 387 | 31 | 1 | 0 | 669 | NUDCD3,CAMK2B |
| SE_02_108500834 | chr7:44372497-44386651 |
Sample_02_1085 | Retinal Pigmented Epithelial | hTERT-RPE1 | 834 | 5 | 377 | 31 | 1 | 0 | 669 | NUDCD3,CAMK2B |
| SE_02_113800992 | chr7:44372733-44387067 |
Sample_02_1138 | Retinal Pigmented Epithelial | RPE1-prometaphase | 992 | 3 | 381 | 31 | 1 | 0 | 669 | NUDCD3,CAMK2B |
| SE_02_127200668 | chr7:44373091-44384672 |
Sample_02_1272 | Leiomyosarcoma | SK-LMS-1_HDAC4KO | 668 | 12 | 326 | 30 | 1 | 0 | 404 | NUDCD3,CAMK2B |
| SE_02_043700172 | chr7:44373493-44384014 |
Sample_02_0437 | Bone | 143B | 172 | 10 | 298 | 26 | 1 | 0 | 300 | NUDCD3,CAMK2B |
| SE_02_086900903 | chr7:44374166-44386129 |
Sample_02_0869 | Fibroblast | VH10_NO_UV | 903 | 9 | 336 | 28 | 1 | 0 | 642 | NUDCD3,CAMK2B |
| SE_02_020100094 | chr7:44374691-44387647 |
Sample_02_0201 | Stomach | MKN7 | 94 | 5 | 347 | 27 | 1 | 0 | 669 | NUDCD3,CAMK2B |
| SE_02_095001107 | chr7:44375279-44409318 |
Sample_02_0950 | Umbilical vein | HUVEC_WT | 1107 | 13 | 881 | 68 | 1 | 0 | 855 | NUDCD3,CAMK2B |
| SE_02_120500176 | chr7:44376379-44486981 |
Sample_02_1205 | Brain | NB3 | 176 | 47 | 2764 | 215 | 3 | 0 | 1228 | NUDCD3 |
| SE_02_118700305 | chr7:44376804-44409558 |
Sample_02_1187 | Brain | GBM16 | 305 | 7 | 840 | 61 | 1 | 0 | 855 | NUDCD3,CAMK2B |
| SE_02_002700312 | chr7:44376808-44409438 |
Sample_02_0027 | Umbilical vein | HUVEC_VEGF_4h | 312 | 4 | 838 | 61 | 1 | 0 | 855 | NUDCD3,CAMK2B |
| SE_02_045101002 | chr7:44377139-44386993 |
Sample_02_0451 | Skin | in vitro transformedskin fibroblasts_tumourigenic | 1002 | 2 | 259 | 17 | 1 | 0 | 669 | NUDCD3,CAMK2B |
| SE_02_065201316 | chr7:44377155-44383919 |
Sample_02_0652 | Tracheobronchial epithelial | HTBE_H3N2_mock | 1316 | 3 | 196 | 14 | 1 | 0 | 283 | NUDCD3,CAMK2B |
| SE_02_094901054 | chr7:44377193-44409307 |
Sample_02_0949 | Umbilical artery | HUAEC_WT | 1054 | 22 | 818 | 61 | 1 | 0 | 855 | NUDCD3,CAMK2B |
| SE_02_144600325 | chr7:44377302-44384146 |
Sample_02_1446 | Adipose | SW872_TAZ_CAMTA1 | 325 | 4 | 193 | 14 | 1 | 0 | 315 | NUDCD3,CAMK2B |
| SE_02_069500218 | chr7:44377520-44397775 |
Sample_02_0695 | Lung | NCI-H889_no infection | 218 | 12 | 538 | 45 | 1 | 0 | 780 | NUDCD3,CAMK2B |
| SE_02_146900524 | chr7:44377632-44402131 |
Sample_02_1469 | Umbilical Vein | HUVEC | 524 | 6 | 644 | 50 | 1 | 0 | 780 | NUDCD3,CAMK2B |
| SE_02_119400866 | chr7:44381006-44409507 |
Sample_02_1194 | Brain | GBM28 | 866 | 9 | 711 | 54 | 1 | 0 | 855 | NUDCD3,CAMK2B |
| SE_02_085700078 | chr7:44381020-44477561 |
Sample_02_0857 | Glioblastoma | Glioblastoma neurosphere cell_HF-3035 | 78 | 20 | 2382 | 191 | 3 | 0 | 1096 | NUDCD3 |
| SE_02_078500310 | chr7:44381469-44386030 |
Sample_02_0785 | Brain | 2097 | 310 | 4 | 117 | 5 | 0 | 0 | 620 | NUDCD3,CAMK2B |
| SE_02_085400729 | chr7:44396882-44409516 |
Sample_02_0854 | Glioblastoma | Glioblastoma neurosphere cell_HF-2354 | 729 | 2 | 295 | 17 | 0 | 0 | 75 | NUDCD3,CAMK2B |
| SE_02_104901979 | chr7:44410333-44488306 |
Sample_02_1049 | Peripheral blood | CD4+ cell_ROMI | 1979 | 32 | 1924 | 150 | 2 | 0 | 373 | NUDCD3 |
| SE_02_121800342 | chr7:44419094-44477771 |
Sample_02_1218 | Bone marrow | Daudi | 342 | 29 | 1442 | 120 | 2 | 0 | 196 | NUDCD3 |
| SE_02_130200250 | chr7:44419412-44491957 |
Sample_02_1302 | Lymphoma | RL DMSO | 250 | 25 | 1810 | 140 | 2 | 0 | 485 | NUDCD3,NPC1L1 |
| SE_02_130300517 | chr7:44419797-44476557 |
Sample_02_1303 | Lymphoma | RL_tazemetostat | 517 | 24 | 1398 | 118 | 2 | 0 | 196 | NUDCD3 |
| SE_02_130400638 | chr7:44419815-44491703 |
Sample_02_1304 | Lymphoma | RL_lenalidomide_tazemetostat | 638 | 24 | 1793 | 139 | 2 | 0 | 485 | NUDCD3,NPC1L1 |
| SE_02_076201926 | chr7:44456434-44497969 |
Sample_02_0762 | Podocyte | podocyte_CTL | 1926 | 9 | 1032 | 69 | 1 | 0 | 289 | NUDCD3,NPC1L1 |
| SE_02_089701027 | chr7:44465354-44499122 |
Sample_02_0897 | Heart | left ventricle_LV1325 | 1027 | 13 | 857 | 55 | 1 | 0 | 289 | NUDCD3,NPC1L1 |
| SE_02_001600619 | chr7:44488302-44501682 |
Sample_02_0016 | Blood | erythroblasts | 619 | 2 | 364 | 31 | 0 | 0 | 157 | NUDCD3,NPC1L1 |
Genomic distribution of SEs associated with NUDCD3