SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000204475
Gene: NCR3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr6:31588895-31593006 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_000800024 chr6:31538039-31593896 Sample_00_0008 Blood CD4-positive-alpha-beta-memory-T-cell 24 6 1442 261 62 374 4241 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB
SE_00_000700045 chr6:31538091-31594189 Sample_00_0007 Blood naive thymus-derived CD4-positive,alpha-beta T cell 45 5 1449 263 62 374 4241 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB
SE_00_000900063 chr6:31538311-31594217 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 63 8 1447 261 61 374 4241 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB
SE_00_004400079 chr6:31538341-31594154 Sample_00_0044 Cord blood T-cell 79 6 1446 261 61 374 4241 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB
SE_02_013200069 chr6:31538372-31599285 Sample_02_0132 Lung 1015_CL 69 8 1585 287 66 377 4241 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB
SE_02_013100059 chr6:31538860-31599165 Sample_02_0131 Lung 1015_PT 59 10 1565 284 66 373 4210 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB
SE_01_004300254 chr6:31539118-31597477 Sample_01_0043 Blood KOPT-K1 254 9 1501 266 60 369 4180 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB
SE_00_002700104 chr6:31539618-31594217 Sample_00_0027 Blood natural-killer-cell 104 7 1400 248 55 356 4126 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB
SE_02_034800136 chr6:31539711-31599303 Sample_02_0348 Peripheral blood CUTLL1_wild-type 136 12 1537 274 60 359 4126 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB
SE_02_034900122 chr6:31539843-31599385 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 122 12 1539 274 60 359 4126 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB
SE_02_002200107 chr6:31540056-31593353 Sample_02_0022 Blood CD8donorA 107 15 1368 240 54 356 4126 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB
SE_00_000500088 chr6:31540697-31593578 Sample_00_0005 Blood B-cell 88 8 1354 238 54 343 4032 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB
SE_00_004500089 chr6:31540768-31593506 Sample_00_0045 Thymus thymus 89 9 1351 236 54 343 4017 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB,ABHD16A,APO,ATP6V1G2-DDX39B,BAG6,CSNK2B,DDX39B,LY6G6C,LY6G6E,CCD1,ICB,PRRC2A
SE_00_004000135 chr6:31540794-31593379 Sample_00_0040 Spleen spleen_30y 135 7 1348 235 54 343 4017 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB,ATP6V1G2-DDX39B,DDX39B,LY6G5B,LY6G5C,LY6G6C,LY6G6F,CCD1,EGT1,ICB
SE_00_003900062 chr6:31540924-31594129 Sample_00_0039 Spleen spleen_3y 62 8 1362 239 54 343 4002 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB,ATP6V1G2-DDX39B,DDX39B,LY6G5B,LY6G5C,LY6G6C,LY6G6F,CCD1,EGT1,ICB
SE_00_000600139 chr6:31540956-31589760 Sample_00_0006 Blood CD14-positive-monocyte 139 6 1244 218 52 335 3733 NFKBIL1,SNORD84,LTB,NCR3,LTA,LST1,ATP6V1G2,BAT1,TNF,AIF1,SNORD117,MCCD1,BAT2,SNORA38,MICB
SE_02_022600114 chr6:31566995-31590501 Sample_02_0226 Blood KOPTK1 114 1 641 78 28 195 2474 LTB,TNF,NCR3,LST1,LTA,NFKBIL1,AIF1,SNORD117,MCCD1,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_02_022200193 chr6:31570985-31590385 Sample_02_0222 Blood DU-528 193 1 563 65 26 187 2474 LTB,TNF,NCR3,LST1,LTA,NFKBIL1,AIF1,SNORD117,MCCD1,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_01_002000757 chr6:31571035-31589606 Sample_01_0020 Blood B-cell 757 1 531 63 25 179 2313 LTB,TNF,NCR3,LST1,LTA,NFKBIL1,AIF1,SNORD117,MCCD1,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_02_033400102 chr6:31571467-31599848 Sample_02_0334 Haematopoietic and lymphoid tissue MOLM14_CA25_11 102 1 805 112 33 190 2621 LTB,TNF,NCR3,LST1,LTA,NFKBIL1,AIF1,SNORD117,MCCD1,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_02_033500084 chr6:31571607-31591162 Sample_02_0335 Haematopoietic and lymphoid tissue MOLM14_CA25_12 84 1 574 69 27 186 2474 LTB,TNF,NCR3,LST1,LTA,NFKBIL1,AIF1,SNORD117,MCCD1,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_02_033200168 chr6:31573697-31590377 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 168 1 494 51 18 152 2067 LTB,TNF,NCR3,LST1,LTA,NFKBIL1,AIF1,SNORD117,MCCD1,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_02_033300100 chr6:31574179-31590201 Sample_02_0333 Haematopoietic and lymphoid tissue MOLM14_DMSO_10 100 1 482 50 18 145 1965 LTB,TNF,NCR3,LST1,LTA,NFKBIL1,AIF1,SNORD117,MCCD1,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_01_008400665 chr6:31578127-31590114 Sample_01_0084 Spleen spleen 665 1 390 36 12 91 1391 LTB,NCR3,LST1,TNF,NFKBIL1,AIF1,SNORD117,MCCD1,LTA,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_02_012800271 chr6:31578513-31590238 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 271 1 389 36 12 89 1355 LTB,NCR3,LST1,NFKBIL1,AIF1,SNORD117,MCCD1,LTA,TNF,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_02_017600761 chr6:31579538-31590396 Sample_02_0176 Peripheral blood LOUCY 761 1 375 31 9 73 1367 LTB,NCR3,LST1,NFKBIL1,AIF1,SNORD117,LTA,TNF,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_01_005200316 chr6:31579883-31590545 Sample_01_0052 Blood neutrophil 316 1 373 31 9 66 1367 LTB,NCR3,LST1,NFKBIL1,AIF1,SNORD117,LTA,TNF,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_02_014400636 chr6:31580141-31589405 Sample_02_0144 Peripheral blood MV411_DMSO 636 2 318 24 8 57 1168 LTB,NCR3,LST1,NFKBIL1,AIF1,SNORD117,LTA,TNF,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_02_034200696 chr6:31580386-31590168 Sample_02_0342 Liver HSPCs_F0 696 2 350 27 9 66 1329 LTB,NCR3,LST1,NFKBIL1,AIF1,SNORD117,LTA,TNF,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_02_034300665 chr6:31580421-31590042 Sample_02_0343 Bone marrow HSPC_A0 665 2 343 27 9 66 1292 LTB,NCR3,LST1,NFKBIL1,AIF1,SNORD117,LTA,TNF,BAT2,SNORA38,BAT1,SNORD84,ATP6V1G2
SE_02_025600875 chr6:31583652-31590465 Sample_02_0256 Peripheral blood MV411 875 1 190 25 8 17 860 LST1,NCR3,NFKBIL1,AIF1,SNORD117,LTA,TNF,BAT2,SNORA38,BAT1,LTB,SNORD84,ATP6V1G2
SE_02_025500528 chr6:31584471-31590468 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 528 1 175 23 8 17 860 LST1,NCR3,NFKBIL1,AIF1,SNORD117,LTA,TNF,BAT2,SNORA38,BAT1,LTB,SNORD84,ATP6V1G2
SE_02_104901706 chr6_GL000251v2_alt:3007058-3070136 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1706 14 0 0 0 0 0 SNORD117,LST1,MCCD1,LTA,SNORD84,ATP6V1G2,ATP6V1G2-DDX39B,NCR3,NFKBIL1,LTB,TNF,DDX39B,HLA-DRB3
SE_02_104902026 chr6_GL000252v2_alt:2789325-2840550 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 2026 16 0 0 0 0 0 LTA,NCR3,NFKBIL1,LST1,DDX39B,LTB,ATP6V1G2,TNF,ATP6V1G2-DDX39B
SE_02_104902117 chr6_GL000255v2_alt:2804016-2849745 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 2117 16 0 0 0 0 0 LTB,TNF,NCR3,LST1,LTA,NFKBIL1
SE_02_104901965 chr6_GL000256v2_alt:2841715-2893256 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1965 20 0 0 0 0 0 LTB,NFKBIL1,ATP6V1G2,NCR3,TNF,LST1,ATP6V1G2-DDX39B,LTA,DDX39B
Genomic distribution of SEs associated with NCR3
Genome Browser

The strength of the tissue affected by the gene

Expression of NCR3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)