SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000104490
Gene: NCALD Gene type: protein_coding
Strand: - External links:
Genomic region: chr8:101686542-102124907 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_039500676 chr8:101685483-101695277 Sample_02_0395 Mammary gland BT-549 676 2 261 1 1 44 508 NCALD,GRHL2
SE_02_025500294 chr8:101685572-101718726 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 294 6 900 34 4 65 508 NCALD
SE_02_099500112 chr8:101685926-101722370 Sample_02_0995 Blood MOLM-13_empty vector 112 15 986 34 4 65 589 NCALD
SE_02_109800245 chr8:101686172-101717729 Sample_02_1098 Blood THP1_DMSO_noPMA 245 11 866 33 4 59 508 NCALD
SE_02_099300097 chr8:101686561-101722855 Sample_02_0993 Blood MOLM-13_empty 97 18 984 34 4 63 557 NCALD
SE_00_001000922 chr8:101686611-101702105 Sample_00_0010 Embryo endodermal-cell 922 2 404 1 2 48 470 NCALD
SE_02_057500159 chr8:101686719-101721835 Sample_02_0575 Blood MOLM13_sgLKB1e2 159 11 956 34 4 63 535 NCALD
SE_02_057400377 chr8:101686744-101722010 Sample_02_0574 Blood MOLM-13_sgNeg2 377 11 962 34 4 63 533 NCALD
SE_02_058100233 chr8:101686746-101721872 Sample_02_0581 Blood MOLM13_empty_HG 233 9 958 34 4 63 533 NCALD
SE_02_057800111 chr8:101686764-101722358 Sample_02_0578 Blood MOLM-13_sgSIK3e4 111 9 968 34 4 63 530 NCALD
SE_02_099400129 chr8:101686784-101722544 Sample_02_0994 Blood MOLM13_SIK3TQ 129 19 971 34 4 63 525 NCALD
SE_02_133200570 chr8:101686795-101722968 Sample_02_1332 Blood Monomac6_CTRL 570 10 983 34 4 63 524 NCALD
SE_00_005300691 chr8:101686816-101703848 Sample_00_0053 Embryo trophoblast cell originated from H1 691 9 452 4 2 51 442 NCALD
SE_02_057700225 chr8:101686829-101722109 Sample_02_0577 Blood MOLM13_empty 225 6 961 34 4 63 520 NCALD
SE_02_058200334 chr8:101686836-101721941 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 334 6 957 34 4 63 520 NCALD
SE_02_062200483 chr8:101688442-101721425 Sample_02_0622 Blood EOL1_Naive 483 25 900 34 3 53 321 NCALD
SE_02_124600215 chr8:101688719-101734181 Sample_02_1246 Brain LAN5_ATRA 215 18 1261 43 5 56 305 NCALD
SE_02_066300129 chr8:101688976-101774823 Sample_02_0663 Thyroid TT 129 25 2366 107 6 144 256 NCALD
SE_02_110400537 chr8:101689059-101726242 Sample_02_1104 Brain NB-69 537 13 1009 34 3 46 247 NCALD
SE_01_011100571 chr8:101689509-101725024 Sample_01_0111 Brain SK-N-SH 571 10 952 34 3 38 186 NCALD
SE_02_007600721 chr8:101689537-101707821 Sample_02_0076 Autonomic ganglia SH-SY5Y_DMSO_3h 721 4 475 14 1 27 100 NCALD
SE_02_055600604 chr8:101689951-101723419 Sample_02_0556 iPSCs BOFS hiPSC cl1 604 5 900 33 3 37 172 NCALD
SE_02_046400197 chr8:101690028-101702340 Sample_02_0464 Bone marrow MOLM-13 197 6 314 1 1 23 91 NCALD
SE_02_003300505 chr8:101740424-101793223 Sample_02_0033 Pancreas pancreatic-islets-F 505 9 1432 65 2 145 72 NCALD
SE_02_024400345 chr8:101742185-101762501 Sample_02_0244 Foreskin foreskin_D11 345 4 596 49 1 51 0 NCALD
SE_02_004700555 chr8:101743296-101792331 Sample_02_0047 Pancreatic endoderm IIDP/donor790 555 10 1341 60 2 144 72 NCALD
SE_00_001000170 chr8:101743726-101771044 Sample_00_0010 Embryo endodermal-cell 170 3 770 50 1 76 0 NCALD
SE_02_096500873 chr8:101743731-101770896 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 873 10 768 50 1 76 0 NCALD
SE_02_057000551 chr8:101749696-101770745 Sample_02_0570 Brain LN229_10_mM_glucose 551 10 594 38 1 74 0 NCALD
SE_02_052300331 chr8:101757212-101794467 Sample_02_0523 Lung NCIH810 331 11 985 30 1 134 72 NCALD
SE_02_074000940 chr8:101757914-101786507 Sample_02_0740 Muscle RH3 940 9 752 20 1 84 11 NCALD
SE_02_083800309 chr8:101758134-101762215 Sample_02_0838 Embryo hNPCs_WT 309 3 120 5 0 34 0 NCALD
SE_02_084000522 chr8:101758518-101787956 Sample_02_0840 Embryo hNPCs_R1159Q/+ 522 8 774 21 1 92 11 NCALD
SE_00_004800385 chr8:101759539-101762068 Sample_00_0048 Embryo neuronal stem cell originated from H1 385 2 76 3 0 20 0 NCALD
SE_02_009500428 chr8:101808621-101836822 Sample_02_0095 Mammary gland MDA-MB-468 428 5 747 34 0 62 0 NCALD
SE_02_142900982 chr8:101831114-101884475 Sample_02_1429 Blood GM12878_WT 982 16 1447 116 1 86 0 NCALD
SE_02_014600044 chr8:101856729-101932029 Sample_02_0146 Bone marrow LP-1_SGC-CBP30 44 8 1974 106 2 94 62 NCALD
SE_02_122300757 chr8:101891478-101913096 Sample_02_1223 Bone marrow KMS28BM 757 7 571 31 1 47 0 NCALD,LOC104054148
SE_02_120500984 chr8:101924477-101982058 Sample_02_1205 Brain NB3 984 28 1574 66 2 109 0 NCALD,LOC104054148
SE_02_138700050 chr8:101930067-102115475 Sample_02_1387 Peripheral blood Mac-1_ALK- 50 64 4909 213 18 341 73 NCALD,LOC104054148,MIR5680
SE_02_139200199 chr8:101934373-102025618 Sample_02_1392 Peripheral blood Mac-2A_ALK- 199 26 2439 91 2 180 19 NCALD,LOC104054148
SE_01_005000426 chr8:101935090-101953166 Sample_01_0050 Embryo neural-cell 426 3 504 13 0 53 0 NCALD
SE_02_139100463 chr8:101941211-101991926 Sample_02_1391 Peripheral blood FE-PD_ALK- 463 8 1395 65 2 93 0 NCALD,LOC104054148
SE_02_142900425 chr8:101947800-101996321 Sample_02_1429 Blood GM12878_WT 425 16 1301 63 2 93 0 NCALD,LOC104054148
SE_01_009300958 chr8:101948598-101998328 Sample_01_0093 Aorta ascending aorta 958 20 1320 63 2 101 0 NCALD,LOC104054148
SE_02_053300752 chr8:101949179-101998375 Sample_02_0533 Blood vessel Circle of Willis_54y 752 15 1310 62 2 101 0 NCALD,LOC104054148
SE_01_011000853 chr8:101949305-101997841 Sample_01_0110 Aorta thoracic aorta_37y 853 14 1298 62 2 95 0 NCALD,LOC104054148
SE_02_014600257 chr8:101955154-101998207 Sample_02_0146 Bone marrow LP-1_SGC-CBP30 257 8 1155 58 1 81 0 NCALD
SE_02_023300761 chr8:101966761-101990632 Sample_02_0233 Tonsil Th1 761 5 644 41 0 28 0 NCALD
SE_02_080800612 chr8:101967440-102012855 Sample_02_0808 Ovary RMG1_ARID1A KO 612 17 1218 56 1 82 0 NCALD,LOC104054148
SE_02_074501347 chr8:102012001-102025105 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1347 3 342 7 0 23 19 NCALD,LOC104054148
SE_02_053300690 chr8:102022109-102071495 Sample_02_0533 Blood vessel Circle of Willis_54y 690 21 1289 42 9 93 54 NCALD,LOC104054148
SE_02_067200014 chr8:102028123-102130500 Sample_02_0672 Endometrium endometrium cancer_DSG 14 39 2652 143 17 185 352 NCALD,MIR5680,LOC104054148
SE_02_067400012 chr8:102028770-102130299 Sample_02_0674 Endometrium E1_FA 12 40 2636 142 17 185 352 NCALD,MIR5680,LOC104054148
SE_02_080800111 chr8:102036444-102133013 Sample_02_0808 Ovary RMG1_ARID1A KO 111 75 2486 147 13 172 298 NCALD,MIR5680
SE_02_023200097 chr8:102037749-102124022 Sample_02_0232 Tonsil ILC3 97 14 2220 127 10 161 0 NCALD
SE_02_142900136 chr8:102038082-102130675 Sample_02_1429 Blood GM12878_WT 136 35 2377 139 11 164 298 NCALD,MIR5680,RRM2B
SE_02_109800043 chr8:102039095-102140959 Sample_02_1098 Blood THP1_DMSO_noPMA 43 27 2631 159 12 163 298 NCALD,MIR5680
SE_00_002900654 chr8:102040692-102076997 Sample_00_0029 Ovary ovary 654 17 915 61 3 67 0 NCALD
SE_02_139200128 chr8:102041118-102115146 Sample_02_1392 Peripheral blood Mac-2A_ALK- 128 15 1899 112 8 139 0 NCALD,MIR5680
SE_02_139100126 chr8:102042135-102125551 Sample_02_1391 Peripheral blood FE-PD_ALK- 126 22 2143 128 9 160 271 NCALD,MIR5680
SE_02_012800116 chr8:102042361-102125421 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 116 20 2138 127 9 160 253 NCALD
SE_02_138600195 chr8:102051153-102069133 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 195 11 458 27 1 39 0 NCALD
SE_02_081700016 chr8:102052886-102130695 Sample_02_0817 Ovary Epithelial ovarian cancer 16 19 1986 133 9 147 298 NCALD,MIR5680
SE_02_068700077 chr8:102075629-102126534 Sample_02_0687 Lung NCI-H146_no infection 77 17 1324 80 7 97 298 NCALD,MIR5680
SE_02_128700025 chr8:102081100-102129671 Sample_02_1287 Lung NCI-H510_p8-15 25 18 1258 72 7 76 298 NCALD,MIR5680
SE_02_155600481 chr8:102081844-102122565 Sample_02_1556 Gastrointestinal Stromal GIST-5_KIT e9 481 6 1077 59 6 59 0 NCALD,MIR5680
SE_02_138600763 chr8:102083971-102114530 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 763 10 801 40 5 46 0 NCALD,MIR5680
SE_02_023100098 chr8:102092977-102123661 Sample_02_0231 Tonsil ILC1 98 7 819 49 6 59 0 NCALD
SE_02_014600134 chr8:102093061-102133014 Sample_02_0146 Bone marrow LP-1_SGC-CBP30 134 7 1060 69 8 70 298 NCALD
SE_00_002700064 chr8:102093085-102125642 Sample_00_0027 Blood natural-killer-cell 64 5 860 50 6 70 283 NCALD
SE_02_023400986 chr8:102094193-102123801 Sample_02_0234 Tonsil Th17 986 7 794 48 6 59 0 NCALD
SE_00_000900659 chr8:102094364-102125329 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 659 4 819 47 6 68 244 NCALD
SE_00_004400748 chr8:102094577-102125282 Sample_00_0044 Cord blood T-cell 748 4 811 46 6 68 242 NCALD
SE_02_002400088 chr8:102095001-102124425 Sample_02_0024 Blood CD56+ Natural Killer cells donor A 88 19 772 45 6 65 100 NCALD
SE_02_023300499 chr8:102095084-102123667 Sample_02_0233 Tonsil Th1 499 4 758 45 6 57 0 NCALD
SE_02_014800475 chr8:102095134-102109691 Sample_02_0148 Blood CD8_T_cells 475 3 394 23 5 28 0 NCALD
SE_02_036300096 chr8:102095608-102125644 Sample_02_0363 Haematopoietic and lymphoid tissue 697 96 4 788 45 6 68 284 NCALD
SE_02_002200724 chr8:102095768-102124621 Sample_02_0022 Blood CD8donorA 724 7 758 43 6 68 160 NCALD
SE_02_109700332 chr8:102096962-102115268 Sample_02_1097 Haematopoietic and lymphoid tissue 697 332 17 490 28 5 44 0 NCALD,MIR5680
SE_02_025500069 chr8:102097659-102140475 Sample_02_0255 Haematopoietic and lymphoid tissue MOLM13 69 8 1139 74 8 68 298 NCALD
SE_02_104301871 chr8:102098230-102122341 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1871 15 656 38 6 48 0 NCALD,MIR5680
SE_02_158500187 chr8:102100470-102113366 Sample_02_1585 Blood SupB15 DMSO 187 10 346 18 4 39 0 NCALD,MIR5680
SE_02_125200565 chr8:102100507-102108573 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 565 6 236 15 4 25 0 NCALD,MIR5680
SE_02_129000192 chr8:102101257-102125831 Sample_02_1290 Lung NCI-H69_p8-15 192 7 646 36 6 65 298 NCALD,MIR5680
SE_02_069300212 chr8:102101428-102125858 Sample_02_0693 Lung NCI-H69_no infection 212 14 639 36 6 65 298 NCALD,MIR5680
SE_02_158600214 chr8:102101628-102114303 Sample_02_1586 Blood SupB15 ACY1035 214 14 328 13 4 40 0 NCALD,MIR5680
SE_02_133100581 chr8:102105296-102129546 Sample_02_1331 Blood Molm13_CTRL 581 8 630 34 4 60 298 NCALD,MIR5680
SE_02_058100082 chr8:102106494-102130358 Sample_02_0581 Blood MOLM13_empty_HG 82 13 609 34 4 53 298 NCALD,MIR5680
SE_02_099500090 chr8:102106528-102130469 Sample_02_0995 Blood MOLM-13_empty vector 90 17 611 35 4 53 298 NCALD,MIR5680
SE_02_057800080 chr8:102106549-102130062 Sample_02_0578 Blood MOLM-13_sgSIK3e4 80 18 600 33 4 53 298 NCALD,MIR5680
SE_02_057400169 chr8:102106556-102129842 Sample_02_0574 Blood MOLM-13_sgNeg2 169 17 594 33 4 53 298 NCALD,MIR5680
SE_02_099300071 chr8:102106556-102130484 Sample_02_0993 Blood MOLM-13_empty 71 20 611 35 4 53 298 NCALD,MIR5680
SE_02_099400118 chr8:102106556-102130526 Sample_02_0994 Blood MOLM13_SIK3TQ 118 20 613 35 4 53 298 NCALD,MIR5680
SE_02_057500076 chr8:102106566-102130421 Sample_02_0575 Blood MOLM13_sgLKB1e2 76 20 609 34 4 53 298 NCALD,MIR5680
SE_02_058200142 chr8:102106606-102130004 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 142 10 596 33 3 53 298 NCALD,MIR5680
SE_02_057700114 chr8:102106742-102130545 Sample_02_0577 Blood MOLM13_empty 114 13 607 35 3 53 298 NCALD,MIR5680
SE_02_023500035 chr8:102107809-102122218 Sample_02_0235 Peripheral blood NK 35 3 382 20 2 31 0 NCALD
Genomic distribution of SEs associated with NCALD
Genome Browser

The strength of the tissue affected by the gene

Expression of NCALD

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)