SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000123066
Gene: MED13L Gene type: protein_coding
Strand: - External links:
Genomic region: chr12:115957905-116277693 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_053200002 chr12:115956161-116305445 Sample_02_0532 Mammary gland T47D 2 188 7893 84 10 267 2202 MED13L,MIR620
SE_02_042000189 chr12:115956250-116005065 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 189 10 1087 6 0 198 1390 MED13L,MIR620
SE_02_139600089 chr12:115956375-116010881 Sample_02_1396 Colon COLO320HSR_DMSO 89 14 1230 7 0 249 1652 MED13L,MIR620
SE_02_040300372 chr12:115994029-116076014 Sample_02_0403 Mammary gland T-47D_untreat 372 18 1922 13 2 89 662 MED13L,MIR620
SE_02_095600010 chr12:115998436-116165149 Sample_02_0956 Brain IDH1_2658 10 57 3839 43 5 78 637 MED13L,MIR620
SE_01_005700454 chr12:116014858-116072574 Sample_01_0057 Pancreas duct PANC-1 454 12 1311 10 1 13 201 MED13L,MIR620
SE_02_116200014 chr12:116015118-116276969 Sample_02_1162 Stomach YCC11 14 132 5937 74 7 13 355 MED13L,MIR620
SE_02_097900925 chr12:116027103-116072455 Sample_02_0979 Brain JN14-BS1_H3.3K27M 925 15 1057 9 0 0 0 MED13L,MIR620
SE_02_107500175 chr12:116044354-116102608 Sample_02_1075 Lymphoma BC-3 175 18 1343 14 2 0 35 MED13L,MIR620
SE_02_122401111 chr12:116045303-116103687 Sample_02_1224 Bone marrow normal plasma cell 1111 30 1344 14 2 0 35 MED13L,MIR620
SE_02_014600391 chr12:116045400-116090725 Sample_02_0146 Bone marrow LP-1_SGC-CBP30 391 7 1067 12 1 0 0 MED13L,MIR620
SE_02_107400113 chr12:116047680-116103447 Sample_02_1074 Lymphoma BC-1 113 16 1276 14 2 0 35 MED13L,MIR620
SE_02_040300080 chr12:116089873-116214322 Sample_02_0403 Mammary gland T-47D_untreat 80 25 2833 38 4 0 88 MED13L,MIR620
SE_02_074000997 chr12:116102124-116138705 Sample_02_0740 Muscle RH3 997 21 861 12 1 0 26 MED13L,MIR620
SE_02_141300205 chr12:116109505-116144225 Sample_02_1413 Muscle RH4_sgBRG1 205 8 796 15 1 0 26 MED13L,MIR620
SE_02_003000390 chr12:116110369-116121619 Sample_02_0030 Kidney human kidney proximal tubule cells 390 3 246 2 0 0 26 MED13L,MIR620
SE_02_106100415 chr12:116111091-116144352 Sample_02_1061 Bone TC71_WT 415 9 774 15 1 0 26 MED13L,MIR620
SE_02_148800415 chr12:116111091-116144352 Sample_02_1488 Bone TC-71 415 9 774 15 1 0 26 MED13L,MIR620
SE_02_042000101 chr12:116111098-116172248 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 101 12 1414 21 1 0 53 MED13L,MIR620
SE_02_084000789 chr12:116111192-116144778 Sample_02_0840 Embryo hNPCs_R1159Q/+ 789 9 777 15 1 0 26 MED13L,MIR620
SE_02_030100402 chr12:116111260-116210425 Sample_02_0301 Neuroblastoma GIMEN 402 15 2256 32 3 0 48 MED13L,MIR620
SE_02_106000375 chr12:116111288-116144785 Sample_02_1060 Bone TC71_SA2 KO 375 7 774 15 1 0 21 MED13L,MIR620
SE_02_143301724 chr12:116111319-116160973 Sample_02_1433 Bone A673 STAG2 null 1724 25 1144 17 1 0 48 MED13L,MIR620
SE_02_080900565 chr12:116111340-116203227 Sample_02_0809 Mammary gland T47D Serum 565 38 2079 29 3 0 47 MED13L,MIR620
SE_02_148300165 chr12:116111349-116165789 Sample_02_1483 Bone RD-ES 165 15 1250 20 1 0 46 MED13L,MIR620
SE_02_126500321 chr12:116111404-116171811 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 321 13 1395 21 1 0 44 MED13L,MIR620
SE_02_087801573 chr12:116111454-116154293 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1573 11 988 16 1 0 41 MED13L,MIR620
SE_02_148000480 chr12:116111463-116160966 Sample_02_1480 Bone MHH-ES-1 480 22 1138 17 1 0 39 MED13L,MIR620
SE_02_126600704 chr12:116111463-116166664 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 704 24 1270 20 1 0 39 MED13L,MIR620
SE_02_101700800 chr12:116111482-116187217 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 800 21 1723 24 2 0 38 MED13L,MIR620
SE_02_101600968 chr12:116111553-116169268 Sample_02_1016 Embryo H9_Mesendoderm_24h 968 12 1319 21 1 0 31 MED13L,MIR620
SE_02_105900720 chr12:116111633-116160940 Sample_02_1059 Bone A673_WT 720 21 1136 17 1 0 30 MED13L,MIR620
SE_02_147300719 chr12:116111633-116160940 Sample_02_1473 Bone A-673 719 21 1136 17 1 0 30 MED13L,MIR620
SE_02_076300929 chr12:116111707-116172470 Sample_02_0763 Podocyte podocyte_DEX 929 14 1408 21 1 0 27 MED13L,MIR620
SE_02_137800208 chr12:116111891-116203109 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 208 41 2060 29 3 0 27 MED13L,MIR620
SE_02_077000623 chr12:116112204-116186376 Sample_02_0770 Ovary OVCA429_shLuc 623 36 1694 24 2 0 27 MED13L,MIR620
SE_02_143201633 chr12:116112259-116161097 Sample_02_1432 Bone A673 STAG2 WT 1633 28 1125 17 1 0 27 MED13L,MIR620
SE_02_083901024 chr12:116112295-116152061 Sample_02_0839 Embryo hNPCs_K755R/+ 1024 8 924 16 1 0 27 MED13L,MIR620
SE_02_137700517 chr12:116112322-116165643 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 517 24 1227 20 1 0 27 MED13L,MIR620
SE_02_137600994 chr12:116112331-116169181 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 994 23 1301 21 1 0 27 MED13L,MIR620
SE_02_137400478 chr12:116112405-116169062 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 478 33 1299 21 1 0 27 MED13L,MIR620
SE_02_107500239 chr12:116116503-116144930 Sample_02_1075 Lymphoma BC-3 239 17 669 14 1 0 0 MED13L,MIR620
SE_02_023200103 chr12:116119047-116221515 Sample_02_0232 Tonsil ILC3 103 28 2328 33 4 0 27 MED13L,MIR620
SE_02_031100306 chr12:116120501-116198293 Sample_02_0311 Neuroblastoma SK-N-AS 306 12 1771 26 2 0 27 MED13L,MIR620
SE_02_103400730 chr12:116120656-116197671 Sample_02_1034 Blood AML cell 730 20 1749 26 2 0 27 MED13L,MIR620
SE_02_076201791 chr12:116120763-116172644 Sample_02_0762 Podocyte podocyte_CTL 1791 14 1219 19 1 0 27 MED13L,MIR620
SE_02_126400574 chr12:116120977-116166374 Sample_02_1264 Bone Im-GCT-4072_G34W KO 574 17 1060 18 1 0 27 MED13L,MIR620
SE_02_047401381 chr12:116121370-116165204 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1381 9 1016 18 1 0 27 MED13L,MIR620
SE_02_038200463 chr12:116121499-116224715 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 463 14 2355 33 4 0 27 MED13L,MIR620
SE_02_137500698 chr12:116121794-116169051 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 698 20 1092 19 1 0 27 MED13L,MIR620
SE_02_146500232 chr12:116121914-116160221 Sample_02_1465 Ovary CAOV4cis 232 9 892 15 1 0 27 MED13L,MIR620
SE_02_006400150 chr12:116121920-116162070 Sample_02_0064 Embryo DN-Early_G1 150 8 939 15 1 0 27 MED13L,MIR620
SE_02_048101420 chr12:116122341-116172280 Sample_02_0481 Mammary gland MDA-MB231 1420 13 1165 19 1 0 27 MED13L,MIR620
SE_01_006600349 chr12:116122722-116169469 Sample_01_0066 Smooth muscle smooth-muscle-cell 349 8 1077 19 1 0 27 MED13L,MIR620
SE_02_106900362 chr12:116122823-116219009 Sample_02_1069 Bone marrow Bone marrow aspirate 362 26 2187 33 3 0 27 MED13L,MIR620
SE_02_122400607 chr12:116123009-116221366 Sample_02_1224 Bone marrow normal plasma cell 607 35 2240 33 4 0 27 MED13L,MIR620
SE_02_138800943 chr12:116123886-116175393 Sample_02_1388 Peripheral blood JB6_ALK+ 943 14 1191 19 1 0 27 MED13L,MIR620
SE_02_015000687 chr12:116129015-116147523 Sample_02_0150 Mammary gland MDA-MB-231_GATA3 687 3 442 9 0 0 0 MED13L,MIR620
SE_02_099000831 chr12:116129551-116144687 Sample_02_0990 Breast cancer brain metastatic variant MDA-MB-231 BrM2 831 6 363 8 0 0 0 MED13L,MIR620
SE_02_151300870 chr12:116132511-116182785 Sample_02_1513 Lung Transitional AT2->1 cells 870 10 1154 15 0 0 27 MED13L,MIR620
SE_02_151100560 chr12:116132914-116173541 Sample_02_1511 Lung H3122_untreated 560 20 954 13 0 0 27 MED13L,MIR620
SE_02_076700927 chr12:116133857-116172384 Sample_02_0767 Ovary OVCA429 927 11 905 11 0 0 27 MED13L,MIR620
SE_02_111000122 chr12:116135616-116169053 Sample_02_1110 Other HGrC1 122 16 762 11 0 0 27 MED13L,MIR620
SE_02_137900899 chr12:116135969-116172254 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 899 8 838 11 0 0 27 MED13L,MIR620
SE_02_006700422 chr12:116138155-116162913 Sample_02_0067 Embryo AzH-G2/M 422 4 558 8 0 0 27 MED13L,MIR620
SE_01_011501058 chr12:116138196-116165385 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1058 8 613 10 0 0 27 MED13L,MIR620
SE_02_006500087 chr12:116138211-116189439 Sample_02_0065 Embryo KO2-Late_G1 87 9 1137 15 1 0 27 MED13L,MIR620
SE_02_006600495 chr12:116138276-116154279 Sample_02_0066 Embryo AzL-S_phase 495 3 361 6 0 0 27 MED13L,MIR620
SE_02_075201179 chr12:116143300-116166677 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 1179 5 533 5 0 0 27 MED13L,MIR620
SE_02_058900661 chr12:116143433-116171872 Sample_02_0589 Cervix HeLa Kyoto_Luci siRNA 661 8 655 6 0 0 27 MED13L,MIR620
SE_02_014600355 chr12:116171567-116216031 Sample_02_0146 Bone marrow LP-1_SGC-CBP30 355 9 982 14 2 0 0 MED13L,MIR620
SE_02_105300247 chr12:116221147-116277705 Sample_02_1053 Esophagus OACM5.1 247 35 1254 18 0 0 215 MED13L
SE_02_122900788 chr12:116228272-116290109 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 788 28 1379 20 0 0 215 MED13L
SE_02_030101282 chr12:116230078-116277521 Sample_02_0301 Neuroblastoma GIMEN 1282 7 1061 17 0 0 215 MED13L
SE_02_080900008 chr12:116231320-116303932 Sample_02_0809 Mammary gland T47D Serum 8 15 1617 20 2 0 215 MED13L
SE_02_040300006 chr12:116231918-116304354 Sample_02_0403 Mammary gland T-47D_untreat 6 9 1617 20 2 0 215 MED13L
SE_02_146500009 chr12:116231946-116304443 Sample_02_1465 Ovary CAOV4cis 9 28 1617 20 2 0 215 MED13L
SE_02_081000023 chr12:116232763-116303610 Sample_02_0810 Mammary gland T47D noSerum 23 45 1574 20 2 0 215 MED13L
SE_01_005700480 chr12:116235189-116304062 Sample_01_0057 Pancreas duct PANC-1 480 11 1542 19 2 0 215 MED13L
SE_02_021300763 chr12:116235315-116277605 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 763 6 966 16 0 0 215 MED13L
SE_02_039400010 chr12:116235386-116304747 Sample_02_0394 Mammary gland T-47D_2 10 10 1558 18 2 0 215 MED13L
SE_02_101701567 chr12:116235461-116278348 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1567 10 971 15 0 0 215 MED13L
SE_02_023200602 chr12:116235526-116283311 Sample_02_0232 Tonsil ILC3 602 12 1092 17 0 0 215 MED13L
SE_02_122400740 chr12:116235701-116283103 Sample_02_1224 Bone marrow normal plasma cell 740 25 1086 17 0 0 215 MED13L
SE_02_148300231 chr12:116235763-116299935 Sample_02_1483 Bone RD-ES 231 20 1447 18 1 0 215 MED13L
SE_02_122500278 chr12:116236024-116277669 Sample_02_1225 Bone marrow RAJI 278 27 956 15 0 0 215 MED13L
SE_02_033200536 chr12:116236104-116283593 Sample_02_0332 Haematopoietic and lymphoid tissue MOLM14_DMSO_9 536 6 1088 17 0 0 215 MED13L
SE_02_146400009 chr12:116236595-116322895 Sample_02_1464 Ovary CAOV4 9 31 2059 23 6 0 215 MED13L
SE_02_108900011 chr12:116236682-116303769 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 11 24 1521 18 2 0 215 MED13L
SE_02_108800015 chr12:116236702-116303736 Sample_02_1088 Mammary gland T47D_shCtrl_45min 15 25 1517 18 2 0 215 MED13L
SE_02_109200009 chr12:116236779-116304303 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 9 19 1529 18 2 0 215 MED13L
SE_02_109300015 chr12:116236847-116304363 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 15 27 1528 18 2 0 215 MED13L
SE_02_108700035 chr12:116236893-116303611 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 35 26 1505 18 2 0 215 MED13L
SE_02_109000009 chr12:116236964-116301166 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 9 22 1453 18 1 0 215 MED13L
SE_02_123400012 chr12:116237036-116305338 Sample_02_1234 Mammary gland T47D_Full 12 36 1543 18 2 0 215 MED13L
SE_02_108600020 chr12:116237144-116301157 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 20 19 1447 18 1 0 215 MED13L
SE_02_109100013 chr12:116237516-116300607 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 13 28 1420 17 1 0 193 MED13L
SE_02_007900007 chr12:116240674-116300893 Sample_02_0079 Mammary gland T-47D_1 7 17 1345 16 1 0 158 MED13L
SE_02_146000651 chr12:116243736-116282968 Sample_02_1460 Blood Mutz-3 651 7 885 14 0 0 158 MED13L
SE_02_115800117 chr12:116254850-116300059 Sample_02_1158 Mammary gland MCF7_siYTHDC1_E2 117 15 1019 9 1 0 158 MED13L
SE_02_006400824 chr12:116257183-116276106 Sample_02_0064 Embryo DN-Early_G1 824 5 435 4 0 0 0 MED13L
SE_02_106900269 chr12:116260984-116283062 Sample_02_1069 Bone marrow Bone marrow aspirate 269 8 494 7 0 0 158 MED13L
SE_02_034700275 chr12:116263508-116286433 Sample_02_0347 Blood AML11 275 14 526 6 0 0 158 MED13L
SE_02_024600371 chr12:116265704-116281626 Sample_02_0246 Mammary gland MCF-7_estradiol 371 3 348 5 0 0 158 MED13L
SE_02_011500167 chr12:116265974-116281617 Sample_02_0115 Mammary gland MCF-7 167 2 339 5 0 0 158 MED13L,ED13L
SE_02_147700411 chr12:116266009-116300656 Sample_02_1477 Bone EW-22 411 8 747 7 1 0 158 MED13L
SE_02_081601792 chr12:116266267-116283234 Sample_02_0816 Ovary Clear cell ovarian cancer 1792 3 370 6 0 0 158 MED13L
SE_02_084100237 chr12:116270012-116344983 Sample_02_0841 Blood THP-1_untr 237 21 1909 19 9 0 158 MED13L
SE_02_068200409 chr12:116270736-116285185 Sample_02_0682 Blood Kasumi-1 409 9 309 5 0 0 158 MED13L
SE_02_099400775 chr12:116272276-116286039 Sample_02_0994 Blood MOLM13_SIK3TQ 775 13 303 4 0 0 158 MED13L
SE_02_057400798 chr12:116272345-116286539 Sample_02_0574 Blood MOLM-13_sgNeg2 798 6 314 4 0 0 158 MED13L
SE_02_099300836 chr12:116272369-116286093 Sample_02_0993 Blood MOLM-13_empty 836 10 303 4 0 0 158 MED13L
SE_02_062300506 chr12:116272999-116279084 Sample_02_0623 Mammary gland TAMR_E2 506 1 125 2 0 0 158 MED13L
SE_02_099500852 chr12:116273052-116286056 Sample_02_0995 Blood MOLM-13_empty vector 852 12 291 4 0 0 158 MED13L
SE_02_083501085 chr12:116275094-116286039 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 1085 4 244 4 0 0 158 MED13L
SE_02_122000734 chr12:116275116-116282740 Sample_02_1220 Bone marrow JJN3 734 2 157 4 0 0 158 MED13L
SE_02_083300710 chr12:116275149-116331289 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 710 12 1386 18 6 0 158 MED13L
Genomic distribution of SEs associated with MED13L
Genome Browser

The strength of the tissue affected by the gene

Expression of MED13L

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)